IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 67.74	0	2408727..2410400	+	557	53719630	-	BPSL2018	-	putative acid phosphatase
1992	 68.84	0	2410598..2411791	+	397	53719631	-	BPSL2019	-	trans-2-enoyl-CoA reductase
1993	 70.96	0	2412415..2413602	+	395	53719632	-	BPSL2020	-	HlyD family secretion protein
1994	 66.54	0	2413784..2415403	+	539	53719633	-	BPSL2021	-	putative drug-resistance related membrane protein
1995	 74.70	+1	2415534..2417114	+	526	53719634	-	BPSL2022	-	putative drug-resistance related outer-membrane protein
1996	 69.73	0	2417418..2418038	-	206	53719635	-	BPSL2024	-	putative two component regulatory system, response regulator
1997	 71.37	0	2418051..2420132	-	693	53719636	-	BPSL2025	-	putative two component regulatory system, sensor kinase
1998	 68.74	0	2420543..2421508	-	321	53719637	-	BPSL2026	-	putative lipoprotein
1999	 71.01	0	2421524..2423872	-	782	53719638	-	BPSL2027	-	putative fimbriae-related protein
2000	 72.14	0	2423980..2424819	-	279	53719639	-	BPSL2028	-	putative fimbriae-assembly chaperone
2001	 72.38	+1	2424837..2425361	-	174	53719640	-	BPSL2029	-	hypothetical protein
2002	 69.16	0	2425438..2425998	-	186	53719641	-	BPSL2030	-	hypothetical protein
2003	 68.68	0	2426051..2426596	-	181	53719642	-	BPSL2031	-	hypothetical protein
2004	 67.45	0	2427413..2428306	-	297	53719643	-	BPSL2032	-	LysR family transcriptional regulator
2005	 67.75	0	2428723..2430009	+	428	53719644	-	BPSL2033	-	putative transport-related membrane protein
2006	 68.70	0	2430054..2431037	+	327	53719645	-	BPSL2034	-	putative hydrolase
2007	 65.25	0	2431505..2431786	+	93	53719646	-	BPSL2035	-	putative regulatory protein
2008	 68.52	0	2432049..2432318	-	89	53719647	-	BPSL2036	-	hypothetical protein
2009	 63.89	0	2432687..2432866	+	59	53719648	-	BPSL2037	-	hypothetical protein
2010	 55.02	-2	2433790..2434656	-	288	53719649	-	BPSL2038	-	hypothetical protein
2011	 54.32	-2	2434826..2437660	-	944	53719650	-	BPSL2039	-	hypothetical protein
2012	 59.13	-1	2437681..2438556	-	291	53719651	-	BPSL2040	-	hypothetical protein
2013	 71.00	0	2438558..2441398	-	946	53719652	-	BPSL2041	-	hypothetical protein
2014	 66.01	0	2441411..2441716	-	101	53719653	-	BPSL2042	-	hypothetical protein
2015	 67.80	0	2441735..2441998	-	87	53719654	-	BPSL2042A	-	hypothetical protein
2016	 61.11	-1	2442210..2442749	-	179	53719655	-	BPSL2043	-	putative lipoprotein
2017	 61.71	-1	2442840..2443061	-	73	53719656	-	BPSL2044	-	hypothetical protein
2018	 57.52	-2	2443066..2443557	-	163	53719657	-	BPSL2045	-	putative lipoprotein
2019	 66.97	0	2443535..2446870	-	1111	53719658	-	BPSL2046	-	hypothetical protein
2020	 57.49	-2	2446979..2449387	-	802	53719659	-	BPSL2047	-	hypothetical protein
2021	 47.81	-2	2449384..2449977	-	197	53719660	-	BPSL2048	-	hypothetical protein
2022	 62.01	-1	2449974..2450531	-	185	53719661	-	BPSL2048A	-	hypothetical protein
2023	 71.46	0	2450668..2451501	-	277	53719662	-	BPSL2049	-	hypothetical protein
2024	 72.42	+1	2451504..2454302	-	932	53719663	-	BPSL2050	-	hypothetical protein
2025	 68.54	0	2454823..2455089	+	88	53719664	-	BPSL2051	-	hypothetical protein
2026	 74.15	+1	2455086..2456528	+	480	53719665	-	BPSL2052	-	hypothetical protein
2027	 68.56	0	2456556..2458406	-	616	53719666	-	BPSL2053	-	hypothetical protein
2028	 71.28	0	2458817..2459293	-	158	53719667	-	BPSL2054	-	hypothetical protein
2029	 70.61	0	2459672..2460508	-	278	53719668	-	BPSL2055	-	hypothetical protein
2030	 68.93	0	2460880..2463447	+	855	53719669	-	BPSL2056	-	putative oxidase
2031	 75.87	+1	2463474..2463962	+	162	53719670	-	BPSL2057	-	hypothetical protein
2032	 68.81	0	2463997..2464557	+	186	53719671	-	BPSL2058	-	hypothetical protein
2033	 71.37	0	2464603..2464836	+	77	53719672	-	BPSL2059	-	hypothetical protein
2034	 63.77	0	2465295..2465639	-	114	53719673	-	BPSL2060	-	hypothetical protein
2035	 69.80	0	2465656..2467185	-	509	53719674	-	BPSL2061	-	hypothetical protein
2036	 70.18	0	2467187..2467897	-	236	53719675	-	BPSL2062	-	OmpA family protein
2037	 69.57	0	2467978..2471250	-	1090	53719676	-	BPSL2063	-	hypothetical protein
2038	 48.89	-2	2471336..2471470	-	44	53719677	-	BPSL2064	-	hypothetical protein
2039	 64.56	0	2471650..2472360	-	236	53719678	-	BPSL2065	-	putative two component system, response regulator
2040	 64.78	0	2473336..2473707	-	123	53719679	-	BPSL2066	-	hypothetical protein
2041	 70.37	0	2473718..2473933	-	71	53719680	-	BPSL2067	-	hypothetical protein
2042	 65.39	0	2474112..2474894	-	260	53719681	-	BPSL2068	-	putative two component system, response regulator
2043	 66.88	0	2475308..2476240	-	310	53719682	-	BPSL2069	-	LysR family transcriptional regulator
2044	 70.33	0	2476552..2477943	-	463	53719683	-	BPSL2070	-	hypothetical protein
2045	 58.97	-1	2478691..2478885	-	64	53719684	-	BPSL2071	-	hypothetical protein
2046	 57.08	-2	2479571..2479789	+	72	53719685	-	BPSL2072	-	hypothetical protein
2047	 66.60	0	2480505..2481983	+	492	53719686	phaZ	BPSL2073	-	poly(3-hydroxybutyrate) depolymerase precursor
2048	 73.34	+1	2482438..2485884	+	1148	53719687	-	BPSL2074	-	putative alpha-amylase-related protein
2049	 70.41	0	2485881..2489276	+	1131	53719688	-	BPSL2075	-	putative trehalose synthase protein
2050	 73.25	+1	2489273..2491489	+	738	53719689	glgB	BPSL2076	-	glycogen branching enzyme
2051	 71.03	0	2491542..2493650	+	702	53719690	-	BPSL2077	-	putative glycogen operon related protein
2052	 73.70	+1	2493677..2495581	+	634	53719691	-	BPSL2078	-	putative trehalose trehalohydrolase protein
2053	 77.46	+2	2495578..2497800	+	740	53719692	-	BPSL2079	-	putative glucanotransferase
2054	 73.97	+1	2497797..2500589	+	930	53719693	-	BPSL2080	-	putative glycosyl hydrolase
2055	 66.87	0	2500774..2501262	-	162	53719694	-	BPSL2081	-	hypothetical protein
2056	 57.14	-2	2501376..2501753	-	125	53719695	-	BPSL2082	-	hypothetical protein
2057	 67.08	0	2501976..2503436	+	486	53719696	-	BPSL2083	-	GntR family transcriptional regulator
2058	 68.43	0	2503503..2505482	-	659	53719697	-	BPSL2084	-	putative bifunctional protein
2059	 67.65	0	2506560..2507069	+	169	53719698	-	BPSL2086	-	hypothetical protein
2060	 58.87	-1	2507411..2508013	+	200	53719699	-	BPSL2087A	-	hypothetical protein
2061	 57.12	-2	2508020..2508742	+	240	53719700	-	BPSL2088	-	hypothetical protein
2062	 70.23	0	2509753..2510595	+	280	53719701	-	BPSL2090	-	putative transferase
2063	 70.64	0	2510636..2511892	-	418	53719702	-	BPSL2091	-	hypothetical protein
2064	 69.49	0	2511975..2513390	-	471	53719703	-	BPSL2092	-	hypothetical protein
2065	 71.09	0	2513634..2513972	-	112	53719704	-	BPSL2093	-	hypothetical protein
2066	 66.67	0	2514194..2514919	+	241	53719705	ompR	BPSL2094	-	osmolarity response regulator
2067	 68.14	0	2514986..2516344	+	452	53719706	-	BPSL2095	-	putative oxidative stress related two component system, sensor kinase
2068	 60.66	-1	2516543..2517091	+	182	53719707	-	BPSL2096	-	putative hydroperoxide reductase
2069	 64.39	0	2517169..2517696	+	175	53719708	-	BPSL2097	-	hypothetical protein
2070	 68.71	0	2518066..2518554	-	162	53719709	ispF	BPSL2098	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2071	 71.59	0	2518595..2519305	-	236	53719710	ispD	BPSL2099	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2072	 69.19	0	2519326..2522895	+	1189	53719711	mfd	BPSL2100	-	transcription-repair coupling factor
2073	 68.31	0	2524088..2525305	+	405	161723201	-	BPSL2101	-	acetylornithine deacetylase
2074	 70.06	0	2525367..2526398	+	343	53719713	-	BPSL2102	-	putative threonine dehydratase
2075	 73.04	+1	2526906..2527313	+	135	53719714	-	BPSL2103	-	hypothetical protein
2076	 68.11	0	2527868..2530426	-	852	53719715	-	BPSL2104	-	putative penicillin-binding protein
2077	 66.96	0	2530906..2531586	+	226	53719716	-	BPSL2105	-	hypothetical protein
2078	 72.10	0	2531701..2532915	+	404	53719717	-	BPSL2106	-	hypothetical protein
2079	 58.56	-1	2533099..2533530	+	143	53719718	mscL	BPSL2107	-	large-conductance mechanosensitive channel
2080	 67.27	0	2533842..2534339	+	165	53719719	-	BPSL2108	-	hypothetical protein
2081	 73.99	+1	2534521..2535408	-	295	53719720	-	BPSL2109	-	putative glyoxylate-realted oxidoreductase
2082	 58.10	-1	2535552..2535761	+	69	53719721	-	BPSL2110	-	hypothetical protein
2083	 64.62	0	2536505..2537434	+	309	53719722	-	BPSL2111	-	LysR family transcriptonal regulator
2084	 70.86	0	2537704..2539134	-	476	53719723	-	BPSL2112	-	hydroxydechloroatrazine ethylaminohydrolase
2085	 68.33	0	2539694..2540053	+	119	53719724	-	BPSL2113	-	putative purine catabolism-related protein
2086	 65.92	0	2540103..2541305	+	400	53719725	-	BPSL2114	-	hypothetical protein
2087	 65.50	0	2542171..2542683	-	170	53719726	-	BPSL2115	-	ureidoglycolate hydrolase
2088	 67.06	0	2542680..2543693	-	337	53719727	-	BPSL2116	-	allantoicase
2089	 68.38	0	2543922..2544446	-	174	53719728	-	BPSL2117	-	putative uricase
2090	 67.61	0	2544443..2545396	-	317	53719729	-	BPSL2118	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.