IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 62.62	-1	2340104..2340424	+	106	53719577	-	BPSL1965	-	hypothetical protein
1939	 68.58	0	2340641..2341945	-	434	53719578	-	BPSL1966	-	putative tRNA processing exoribonuclease
1940	 72.25	+1	2342060..2342668	+	202	53719579	-	BPSL1967	-	putative Trp repressor binding protein
1941	 74.00	+1	2342665..2343114	+	149	53719580	-	BPSL1968	-	hypothetical protein
1942	 69.55	0	2343149..2344570	+	473	53719581	-	BPSL1969	-	putative FAD-binding reductase
1943	 69.75	0	2344602..2345573	+	323	53719582	-	BPSL1970	-	calcineurin-like phosphoesterase
1944	 68.58	0	2345922..2346863	-	313	53719583	-	BPSL1971	-	LysR family transcriptional regulator
1945	 73.53	+1	2347021..2348973	+	650	53719584	-	BPSL1972	-	putative antibiotic resistance membrane protein
1946	 71.03	0	2348990..2351191	+	733	53719585	-	BPSL1973	-	putative antibiotic resistance protein
1947	 64.22	0	2351188..2351391	+	67	53719586	-	BPSL1974	-	hypothetical protein
1948	 67.67	0	2351393..2352286	+	297	53719587	-	BPSL1975	-	putative antibiotic resistance protein
1949	 70.60	0	2352657..2354333	-	558	53719588	-	BPSL1976	-	putative chemotaxis methyl-accepting membrane protein
1950	 66.91	0	2354685..2355935	+	416	53719589	fsr	BPSL1977	-	putative fosmidomycin resistance protein
1951	 71.74	0	2356296..2357084	-	262	53719590	-	BPSL1978	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1952	 69.04	0	2357081..2359444	-	787	53719591	-	BPSL1979	-	putative helicase
1953	 66.21	0	2359584..2362451	+	955	53719592	valS	BPSL1980	-	valyl-tRNA synthetase
1954	 63.83	0	2362538..2363419	+	293	53719593	galU	BPSL1981	-	UTP--glucose-1-phosphate uridylyltransferase
1955	 73.14	+1	2363480..2364097	-	205	53719594	-	BPSL1982	-	putative lipoprotein
1956	 69.26	0	2364186..2366579	-	797	53719595	-	BPSL1983	-	putative two component system, histidine kinase
1957	 70.82	0	2366590..2367936	-	448	53719596	-	BPSL1984	-	hypothetical protein
1958	 63.65	0	2367951..2368679	-	242	53719597	-	BPSL1985	-	putative two component system, response regulator
1959	 70.54	0	2368983..2369369	-	128	53719598	-	BPSL1986	-	hypothetical protein
1960	 62.77	0	2369645..2369875	-	76	53719599	-	BPSL1987	-	hypothetical protein
1961	 72.83	+1	2370040..2371077	-	345	53719600	-	BPSL1988	-	putative oxidoreductase
1962	 71.57	0	2371090..2372109	-	339	53719601	-	BPSL1989	-	putative oxidoreductase
1963	 67.35	0	2372102..2372983	-	293	53719602	-	BPSL1990	-	putative transcriptional regulatory protein
1964	 65.62	0	2373228..2374277	+	349	53719603	-	BPSL1991	-	putative sugar ABC transport system, substrate-binding periplasmic protein
1965	 68.15	0	2374378..2375523	+	381	53719604	-	BPSL1992	-	putative sugar ABC transport system, membrane protein
1966	 65.42	0	2375536..2376336	+	266	53719605	-	BPSL1993	-	putative ABC transport system, ATP-binding protein
1967	 72.01	0	2376350..2378350	+	666	53719606	-	BPSL1994	-	putative carbohydrate kinase
1968	 73.21	+1	2378361..2380346	+	661	53719607	-	BPSL1995	-	putative TPP-binding acetolactate synthase
1969	 70.14	0	2380343..2381263	+	306	53719608	-	BPSL1996	-	putative amine catabolism-related protein
1970	 69.78	0	2381263..2382066	+	267	53719609	-	BPSL1997	-	hypothetical protein
1971	 75.04	+1	2382183..2382887	-	234	53719610	-	BPSL1998	-	putative branched amino acid related transport system protein
1972	 73.70	+1	2382884..2385214	-	776	53719611	-	BPSL1999	-	putative branched amino acid related transport system, bifunctional protein (membrane and ATP-binding)
1973	 72.97	+1	2385207..2386142	-	311	53719612	-	BPSL2000	-	putative branched amino acid transport system, membrane protein
1974	 70.00	0	2386147..2386596	-	149	53719613	-	BPSL2001	-	putative thioesterase
1975	 71.71	0	2386847..2387995	-	382	53719614	-	BPSL2002	-	putative iron-containing alcohol dehydrogenase
1976	 68.75	0	2388211..2388546	+	111	53719615	-	BPSL2003	-	hypothetical protein
1977	 70.00	0	2388646..2389275	-	209	53719616	-	BPSL2004	-	putative phosphatase
1978	 63.57	0	2389489..2390166	+	225	53719617	-	BPSL2005	-	hypothetical protein
1979	 72.13	0	2390396..2391952	-	518	53719618	-	BPSL2006	-	hypothetical protein
1980	 73.57	+1	2392284..2393978	-	564	53719619	-	BPSL2007	-	hypothetical protein
1981	 74.53	+1	2394125..2395090	+	321	53719620	-	BPSL2008	-	LysR family transcriptional regulator
1982	 68.38	0	2395633..2398257	-	874	53719621	alaS	BPSL2009	-	alanyl-tRNA synthetase
1983	 71.09	0	2398792..2400012	+	406	53719622	-	BPSL2010	-	putative lipid metabolism-related protein
1984	 74.88	+1	2400341..2400547	-	68	53719623	-	BPSL2011	-	putative osmosis-related lipoprotein
1985	 64.91	0	2400830..2402539	+	569	53719624	glnS	BPSL2012	-	glutaminyl-tRNA synthetase
1986	 72.57	+1	2402897..2403370	-	157	53719625	-	BPSL2013	-	NUDIX family hydrolase
1987	 66.93	0	2403398..2403784	-	128	53719626	-	BPSL2014	-	hypothetical protein
1988	 70.18	0	2404072..2406120	-	682	53719627	-	BPSL2015	-	putative membrane attached glycosyl hydrolase
1989	 67.09	0	2406423..2407133	+	236	53719628	-	BPSL2016	-	hypothetical protein
1990	 71.36	0	2407186..2408571	-	461	53719629	-	BPSL2017	-	di-haem cytochrome c peroxidase
1991	 67.74	0	2408727..2410400	+	557	53719630	-	BPSL2018	-	putative acid phosphatase
1992	 68.84	0	2410598..2411791	+	397	53719631	-	BPSL2019	-	trans-2-enoyl-CoA reductase
1993	 70.96	0	2412415..2413602	+	395	53719632	-	BPSL2020	-	HlyD family secretion protein
1994	 66.54	0	2413784..2415403	+	539	53719633	-	BPSL2021	-	putative drug-resistance related membrane protein
1995	 74.70	+1	2415534..2417114	+	526	53719634	-	BPSL2022	-	putative drug-resistance related outer-membrane protein
1996	 69.73	0	2417418..2418038	-	206	53719635	-	BPSL2024	-	putative two component regulatory system, response regulator
1997	 71.37	0	2418051..2420132	-	693	53719636	-	BPSL2025	-	putative two component regulatory system, sensor kinase
1998	 68.74	0	2420543..2421508	-	321	53719637	-	BPSL2026	-	putative lipoprotein
1999	 71.01	0	2421524..2423872	-	782	53719638	-	BPSL2027	-	putative fimbriae-related protein
2000	 72.14	0	2423980..2424819	-	279	53719639	-	BPSL2028	-	putative fimbriae-assembly chaperone
2001	 72.38	+1	2424837..2425361	-	174	53719640	-	BPSL2029	-	hypothetical protein
2002	 69.16	0	2425438..2425998	-	186	53719641	-	BPSL2030	-	hypothetical protein
2003	 68.68	0	2426051..2426596	-	181	53719642	-	BPSL2031	-	hypothetical protein
2004	 67.45	0	2427413..2428306	-	297	53719643	-	BPSL2032	-	LysR family transcriptional regulator
2005	 67.75	0	2428723..2430009	+	428	53719644	-	BPSL2033	-	putative transport-related membrane protein
2006	 68.70	0	2430054..2431037	+	327	53719645	-	BPSL2034	-	putative hydrolase
2007	 65.25	0	2431505..2431786	+	93	53719646	-	BPSL2035	-	putative regulatory protein
2008	 68.52	0	2432049..2432318	-	89	53719647	-	BPSL2036	-	hypothetical protein
2009	 63.89	0	2432687..2432866	+	59	53719648	-	BPSL2037	-	hypothetical protein
2010	 55.02	-2	2433790..2434656	-	288	53719649	-	BPSL2038	-	hypothetical protein
2011	 54.32	-2	2434826..2437660	-	944	53719650	-	BPSL2039	-	hypothetical protein
2012	 59.13	-1	2437681..2438556	-	291	53719651	-	BPSL2040	-	hypothetical protein
2013	 71.00	0	2438558..2441398	-	946	53719652	-	BPSL2041	-	hypothetical protein
2014	 66.01	0	2441411..2441716	-	101	53719653	-	BPSL2042	-	hypothetical protein
2015	 67.80	0	2441735..2441998	-	87	53719654	-	BPSL2042A	-	hypothetical protein
2016	 61.11	-1	2442210..2442749	-	179	53719655	-	BPSL2043	-	putative lipoprotein
2017	 61.71	-1	2442840..2443061	-	73	53719656	-	BPSL2044	-	hypothetical protein
2018	 57.52	-2	2443066..2443557	-	163	53719657	-	BPSL2045	-	putative lipoprotein
2019	 66.97	0	2443535..2446870	-	1111	53719658	-	BPSL2046	-	hypothetical protein
2020	 57.49	-2	2446979..2449387	-	802	53719659	-	BPSL2047	-	hypothetical protein
2021	 47.81	-2	2449384..2449977	-	197	53719660	-	BPSL2048	-	hypothetical protein
2022	 62.01	-1	2449974..2450531	-	185	53719661	-	BPSL2048A	-	hypothetical protein
2023	 71.46	0	2450668..2451501	-	277	53719662	-	BPSL2049	-	hypothetical protein
2024	 72.42	+1	2451504..2454302	-	932	53719663	-	BPSL2050	-	hypothetical protein
2025	 68.54	0	2454823..2455089	+	88	53719664	-	BPSL2051	-	hypothetical protein
2026	 74.15	+1	2455086..2456528	+	480	53719665	-	BPSL2052	-	hypothetical protein
2027	 68.56	0	2456556..2458406	-	616	53719666	-	BPSL2053	-	hypothetical protein
2028	 71.28	0	2458817..2459293	-	158	53719667	-	BPSL2054	-	hypothetical protein
2029	 70.61	0	2459672..2460508	-	278	53719668	-	BPSL2055	-	hypothetical protein
2030	 68.93	0	2460880..2463447	+	855	53719669	-	BPSL2056	-	putative oxidase
2031	 75.87	+1	2463474..2463962	+	162	53719670	-	BPSL2057	-	hypothetical protein
2032	 68.81	0	2463997..2464557	+	186	53719671	-	BPSL2058	-	hypothetical protein
2033	 71.37	0	2464603..2464836	+	77	53719672	-	BPSL2059	-	hypothetical protein
2034	 63.77	0	2465295..2465639	-	114	53719673	-	BPSL2060	-	hypothetical protein
2035	 69.80	0	2465656..2467185	-	509	53719674	-	BPSL2061	-	hypothetical protein
2036	 70.18	0	2467187..2467897	-	236	53719675	-	BPSL2062	-	OmpA family protein
2037	 69.57	0	2467978..2471250	-	1090	53719676	-	BPSL2063	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.