IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
124	 72.66	+1	137048..138031	+	327	53717763	fmt	BPSL0122	-	methionyl-tRNA formyltransferase
125	 66.67	0	138152..138787	+	211	53717764	-	BPSL0123	-	putative LysE type translocator protein
126	 65.15	0	138897..139754	+	285	53717765	-	BPSL0124	-	heat shock protein HtpX
127	 72.41	+1	140228..141637	+	469	53717766	sun	BPSL0125	-	NOL1/NOP2/Sun family protein
128	 64.30	0	141634..142224	+	196	53717767	-	BPSL0126	-	hypothetical protein
129	 66.79	0	142226..144634	+	802	53717768	-	BPSL0127	-	sensor kinase protein
130	 68.57	0	144635..145318	+	227	53717769	-	BPSL0128	-	response regulator protein
131	 62.42	-1	145390..146520	-	376	53717770	int	BPSL0129	-	prophage integrase
132	 68.10	0	147388..150180	-	930	53717771	-	BPSL0130	-	hypothetical protein
133	 70.98	0	150192..150446	-	84	53717772	-	BPSL0130a	-	hypothetical protein
134	 66.94	0	150443..150811	-	122	53717773	-	BPSL0131	-	hypothetical protein
135	 59.42	-1	150805..151011	-	68	53717774	-	BPSL0132	-	hypothetical protein
136	 64.17	0	151180..151419	-	79	53717775	-	BPSL0133	-	hypothetical protein
137	 63.81	0	151423..151632	-	69	53717776	-	BPSL0134	-	putative phage-encoded membrane protein
138	 67.68	0	151661..151858	-	65	53717777	-	BPSL0135	-	hypothetical protein
139	 65.75	0	151864..152082	-	72	53717778	-	BPSL0136	-	hypothetical protein
140	 64.65	0	152098..152643	-	181	53717779	-	BPSL0137	-	hypothetical protein
141	 64.66	0	152729..152977	-	82	53717780	-	BPSL0138	-	hypothetical protein
142	 62.29	-1	152965..153261	-	98	53717781	-	BPSL0139	-	putative phage DNA-binding protein
143	 61.03	-1	153265..153459	-	64	53717782	-	BPSL0140	-	hypothetical protein
144	 56.75	-2	153540..154043	+	167	53717783	-	BPSL0141	-	putative phage DNA-binding protein
145	 54.00	-2	154096..154845	+	249	53717784	-	BPSL0142	-	putative phage-encoded membrane protein
146	 53.89	-2	154888..155388	+	166	53717785	-	BPSL0143	-	hypothetical protein
147	 64.94	0	155396..156493	-	365	53717786	-	BPSL0144	-	hypothetical protein
148	 66.90	0	156493..156918	-	141	53717787	-	BPSL0145	-	hypothetical protein
149	 66.06	0	156936..159902	-	988	53717788	-	BPSL0146	-	putative phage-encoded membrane protein
150	 63.16	0	159899..160012	-	37	53717789	-	BPSL0147	-	hypothetical protein
151	 67.25	0	160021..160365	-	114	53717790	-	BPSL0148	-	hypothetical protein
152	 60.00	-1	160423..160932	-	169	53717791	-	BPSL0149	-	phage major tail tube protein
153	 67.09	0	160948..162120	-	390	53717792	-	BPSL0150	-	phage major tail sheath protein
154	 73.51	+1	162176..162847	-	223	53717793	-	BPSL0151	-	putative phage tail fiber assembly protein
155	 69.83	0	162864..165236	-	790	53717794	-	BPSL0152	-	phage-related tail fiber protein
156	 69.19	0	165238..165792	-	184	53717795	-	BPSL0153	-	hypothetical protein
157	 67.77	0	165785..166690	-	301	53717796	-	BPSL0154	-	phage baseplate assembly protein
158	 68.32	0	166687..167049	-	120	53717797	-	BPSL0155	-	phage baseplate assembly protein
159	 68.72	0	167046..167726	-	226	53717798	-	BPSL0156	-	phage baseplate assembly protein
160	 66.27	0	167900..168658	+	252	53717799	-	BPSL0157	-	phage-encoded modification methylase
161	 39.46	-2	168655..168801	-	48	53717800	-	BPSL0158	-	hypothetical protein
162	 66.24	0	169058..169525	-	155	53717801	-	BPSL0159	-	phage tail completion protein
163	 63.79	0	169522..169938	-	138	53717802	-	BPSL0160	-	phage tail completion protein
164	 69.20	0	169931..170206	-	91	53717803	-	BPSL0161	-	hypothetical protein
165	 70.52	0	170043..170483	-	146	53717804	-	BPSL0162	-	putative phage-encoded lipoprotein
166	 67.90	0	170480..171292	-	270	53717805	-	BPSL0163	-	putative phage-encoded peptidoglycan binding protein
167	 68.13	0	171289..171561	-	90	53717806	-	BPSL0164	-	putative phage-encoded membrane protein
168	 68.41	0	171563..171907	-	114	53717807	-	BPSL0165	-	putative phage-encoded membrane protein
169	 67.15	0	171922..172128	-	68	53717808	-	BPSL0166	-	phage tail protein
170	 71.43	0	172125..172376	-	83	53717809	-	BPSL0167	-	hypothetical protein
171	 73.12	+1	172376..172855	-	159	53717810	-	BPSL0168	-	phage head completion/stabilization protein
172	 71.45	0	172955..173644	-	229	53717811	-	BPSL0169	-	phage terminase, endonuclease subunit
173	 63.11	0	173641..174651	-	336	53717812	-	BPSL0170	-	phage major capsid protein precursor
174	 66.54	0	174685..175494	-	269	53717813	-	BPSL0171	-	putative phage capsid scaffolding protein
175	 64.92	0	175638..177407	+	589	53717814	-	BPSL0172	-	phage terminase, ATPase subunit
176	 66.19	0	177404..178459	+	351	53717815	-	BPSL0173	-	putative phage portal vertex protein
177	 64.99	0	178503..178859	-	118	53717816	-	BPSL0174	-	putative phage DNA-binding protein
178	 56.79	-2	178862..179185	-	107	53717817	-	BPSL0175	-	hypothetical protein
179	 55.87	-2	179988..180728	-	246	53717818	-	BPSL0176	-	putative phage-encoded membrane protein
180	 66.39	0	182072..182806	+	244	53717819	-	BPSL0177	-	hypothetical protein
181	 66.19	0	182900..183532	+	210	53717820	-	BPSL0178	-	hypothetical protein
182	 62.69	0	183552..184004	+	150	53717821	-	BPSL0179	-	6-pyruvoyl tetrahydropterin synthase
183	 73.28	+1	184424..185209	+	261	53717822	-	BPSL0180	-	HpcH/HpaI aldolase family protein
184	 73.87	+1	185206..185982	+	258	53717823	-	BPSL0181	-	hypothetical protein
185	 65.36	0	186311..187459	-	382	53717824	rodA	BPSL0182	-	rod shape-determining protein
186	 68.82	0	187471..189927	-	818	53717825	mrdA	BPSL0183	-	penicillin-binding protein
187	 68.23	0	190111..190623	-	170	53717826	-	BPSL0184	-	putative rod shape-determining protein
188	 71.32	0	190620..191693	-	357	53717827	-	BPSL0185	-	putative rod shape-determining protein
189	 64.94	0	191813..192856	-	347	53717828	mreB	BPSL0186	-	putative rod shape-determining protein
190	 67.69	0	193227..193520	+	97	53717829	gatC	BPSL0187	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
191	 70.15	0	193633..195123	+	496	53717830	gatA	BPSL0188	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
192	 65.51	0	195126..196598	+	490	53717831	gatB	BPSL0189	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
193	 65.83	0	196725..197564	+	279	53717832	-	BPSL0190	-	hypothetical protein
194	 62.52	-1	197596..198366	+	256	53717833	-	BPSL0191	-	endonuclease/exonuclease/phosphatase family protein
195	 65.82	0	198655..199719	-	354	53717834	adhC	BPSL0192	-	NADP-dependent alcohol dehydrogenase
196	 70.05	0	199931..200875	+	314	53717835	-	BPSL0193	-	AraC family transcription regulator
197	 73.02	+1	201249..202193	-	314	53717836	-	BPSL0194	-	hypothetical protein
198	 67.12	0	202291..203604	-	437	53717837	-	BPSL0195	-	hypothetical protein
199	 63.74	0	203616..204230	-	204	53717838	-	BPSL0196	-	hypothetical protein
200	 66.49	0	204227..205372	-	381	53717839	metX	BPSL0197	-	homoserine O-acetyltransferase
201	 68.26	0	205721..206410	-	229	53717840	slmA	BPSL0198	-	nucleoid occlusion protein
202	 70.02	0	206377..207180	-	267	53717841	-	BPSL0199	-	haloacid dehalogenase-like hydrolase
203	 64.11	0	207177..208076	-	299	53717842	argB	BPSL0200	-	acetylglutamate kinase
204	 69.01	0	208670..209950	+	426	53717843	-	BPSL0201	-	sensor kinase protein
205	 65.94	0	209961..210512	+	183	53717844	-	BPSL0202	-	response regulator protein
206	 63.99	0	210930..212273	-	447	53717845	hslU	BPSL0203	-	ATP-dependent protease ATP-binding subunit
207	 67.41	0	212283..212819	-	178	53717846	hslV	BPSL0204	-	ATP-dependent protease peptidase subunit
208	 60.67	-1	213074..213490	-	138	53717847	-	BPSL0205	-	dksA/traR C4-type zinc finger family protein
209	 62.17	-1	214040..215152	-	370	53717848	-	BPSL0206	-	hypothetical protein
210	 70.42	0	215294..216571	-	425	53717849	-	BPSL0207	-	hypothetical protein
211	 69.35	0	216660..217592	-	310	53717850	xerC	BPSL0208	-	site-specific tyrosine recombinase XerC
212	 71.00	0	217630..218367	-	245	53717851	-	BPSL0209	-	hypothetical protein
213	 70.57	0	218391..219260	-	289	53717852	dapF	BPSL0210	-	diaminopimelate epimerase
214	 66.21	0	219301..220185	-	294	53717853	-	BPSL0211	-	lipid A biosynthesis lauroyl acyltransferase
215	 67.17	0	220451..221638	+	395	53717854	metK	BPSL0212	-	S-adenosylmethionine synthetase
216	 73.45	+1	221805..222158	-	117	53717855	-	BPSL0212A	-	hypothetical protein
217	 66.33	0	222402..223295	+	297	53717856	-	BPSL0213	-	hypothetical protein
218	 63.14	0	223564..223818	+	84	53717857	-	BPSL0214	-	hypothetical protein
219	 65.90	0	223950..224993	+	347	53717858	-	BPSL0215	-	aldo/keto reductase family protein
220	 68.28	0	225080..225265	-	61	53717859	-	BPSL0216	-	hypothetical protein
221	 71.41	0	225533..226396	-	287	53717860	-	BPSL0217	-	hypothetical protein
222	 71.86	0	226751..228040	-	429	53717861	-	BPSL0218	-	putative transporter protein
223	 65.26	0	228394..228606	+	70	53717862	-	BPSL0219	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.