IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1305	 65.93	0	1524128..1525492	-	454	53718944	-	BPSL1306	-	hypothetical protein
1306	 65.51	0	1526205..1526807	+	200	53718945	-	BPSL1307	-	hypothetical protein
1307	 72.93	+1	1526860..1527657	+	265	53718946	-	BPSL1308	-	hypothetical protein
1308	 69.33	0	1528053..1528691	-	212	53718947	-	BPSL1309	-	hypothetical protein
1309	 74.45	+1	1528813..1530354	+	513	53718948	-	BPSL1310	-	GntR family regulatory protein
1310	 68.08	0	1530602..1531096	-	164	53718949	-	BPSL1311	-	AsnC family transcriptional regulator
1311	 69.61	0	1531255..1533156	+	633	53718950	glmS2	BPSL1312	-	glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2
1312	 72.97	+1	1533366..1534697	-	443	53718951	-	BPSL1313	-	putative dioxygenase
1313	 75.32	+1	1534719..1535423	-	234	53718952	-	BPSL1314	-	hypothetical protein
1314	 69.78	0	1535587..1536486	-	299	53718953	-	BPSL1315	-	LysR family transcriptional regulator
1315	 67.57	0	1536737..1537507	+	256	53718954	-	BPSL1316	-	short chain dehydrogenase
1316	 73.56	+1	1537725..1539116	-	463	53718955	-	BPSL1317	-	putative lipoprotein
1317	 72.30	+1	1539500..1539907	-	135	53718956	-	BPSL1318	-	hypothetical protein
1318	 70.35	0	1539904..1541721	-	605	53718957	-	BPSL1319	-	putative nitrite/sulfite reductase
1319	 63.59	0	1542263..1542457	+	64	53718958	-	BPSL1320	-	hypothetical protein
1320	 69.85	0	1542534..1544009	-	491	53718959	-	BPSL1321	-	GntR family transcriptional regulator
1321	 68.16	0	1544714..1545115	-	133	53718960	-	BPSL1322	-	putative heat shock protein
1322	 65.30	0	1545147..1545584	-	145	53718961	-	BPSL1323	-	putative heat shock protein
1323	 66.98	0	1545977..1546300	+	107	53718962	-	BPSL1323a	-	hypothetical protein
1324	 68.86	0	1547220..1549085	+	621	53718963	pckG	BPSL1324	-	phosphoenolpyruvate carboxykinase
1325	 69.56	0	1549366..1550298	+	310	53718964	-	BPSL1325	-	putative 3-hydroxyacyl-CoA dehydrogenase
1326	 72.44	+1	1550869..1551717	-	282	53718965	-	BPSL1326	-	LysR family transcriptional regulator
1327	 70.45	0	1551987..1552382	+	131	53718966	-	BPSL1327	-	putative malonate transport-related system membrane protein
1328	 71.81	0	1552405..1553163	+	252	53718967	-	BPSL1328	-	putative malonate transport-related system membrane protein
1329	 70.61	0	1553456..1555102	+	548	53718968	-	BPSL1329	-	putative malonate decarboxylase alpha-subunit
1330	 71.38	0	1555116..1555433	+	105	53718969	-	BPSL1330	-	malonate decarboxylase subunit delta
1331	 75.32	+1	1555430..1556377	+	315	53718970	-	BPSL1331	-	malonate decarboxylase subunit beta
1332	 74.10	+1	1556364..1557089	+	241	53718971	-	BPSL1332	-	putative malonate decarboxylase gamma-subunit
1333	 73.35	+1	1557064..1557990	+	308	161723206	-	BPSL1333	-	phosphoribosyl-dephospho-CoA transferase
1334	 77.95	+2	1558572..1559342	+	256	53718973	-	BPSL1334	-	putative coenzyme-A synthase
1335	 77.00	+2	1559339..1560277	+	312	53718974	-	BPSL1335	-	acyl-carrier-protein S-malonyltransferase
1336	 71.61	0	1560371..1560916	+	181	53718975	-	BPSL1336	-	hypothetical protein
1337	 70.93	0	1561322..1562236	+	304	53718976	-	BPSL1337	-	hypothetical protein
1338	 68.25	0	1562684..1563313	+	209	53718977	-	BPSL1338	-	putative glutathione S-transferase related protein
1339	 70.30	0	1563720..1565207	-	495	53718978	-	BPSL1339	-	putative proline/betaine transporter
1340	 70.57	0	1565742..1566074	+	110	53718979	-	BPSL1340	-	hypothetical protein
1341	 66.80	0	1566419..1567141	-	240	53718980	dnaQ	BPSL1341	-	DNA polymerase III subunit epsilon
1342	 66.67	0	1567199..1567645	-	148	53718981	rnhA	BPSL1342	-	ribonuclease HI
1343	 69.00	0	1567642..1568454	-	270	53718982	-	BPSL1343	-	hypothetical protein
1344	 72.86	+1	1568475..1569281	+	268	53718983	-	BPSL1344	-	putative gultathione hydrolase
1345	 66.97	0	1569365..1571026	+	553	53718984	-	BPSL1345	-	putative exported transglycosylase protein
1346	 70.15	0	1571107..1572399	+	430	53718985	-	BPSL1346	-	hypothetical protein
1347	 69.75	0	1572506..1573639	-	377	53718986	-	BPSL1347	-	hypothetical protein
1348	 70.28	0	1573867..1574889	+	340	53718987	-	BPSL1348	-	AraC family transcriptional regulator
1349	 67.45	0	1575304..1576449	+	381	53718988	carA	BPSL1349	-	carbamoyl phosphate synthase small subunit
1350	 69.23	0	1576481..1577143	+	220	53718989	-	BPSL1350	-	leucine export protein LeuE
1351	 66.51	0	1577195..1580449	+	1084	53718990	carB	BPSL1351	-	carbamoyl phosphate synthase large subunit
1352	 63.52	0	1580568..1581044	+	158	53718991	greA	BPSL1352	-	transcription elongation factor GreA
1353	 72.22	+1	1581044..1581547	+	167	53718992	-	BPSL1353	-	hypothetical protein
1354	 71.35	0	1581618..1582172	-	184	53718993	-	BPSL1354	-	hypothetical protein
1355	 62.14	-1	1582366..1583028	+	220	53718994	-	BPSL1355	-	putative ribosomal RNA large subunit methyltransferase
1356	 65.39	0	1583196..1585082	+	628	53718995	ftsH	BPSL1356	-	FtsH endopeptidase
1357	 70.15	0	1585195..1586085	+	296	53718996	folP	BPSL1357	-	dihydropteroate synthase
1358	 68.58	0	1586111..1587469	+	452	53718997	-	BPSL1358	-	putative phosphoglucomutase
1359	 65.11	0	1587905..1588933	+	342	53718998	pstS	BPSL1359	-	phosphate transport system, substrate-binding exported periplasmic protein
1360	 65.86	0	1589040..1590026	+	328	53718999	pstC	BPSL1360	-	phosphate transporter permease subunit
1361	 67.45	0	1590023..1590916	+	297	161723205	pstA	BPSL1361	-	phosphate transporter permease subunit
1362	 63.02	0	1590932..1591780	+	282	53719001	pstB	BPSL1362	-	phosphate transport system ATP-binding protein
1363	 63.69	0	1591800..1592504	+	234	53719002	-	BPSL1363	-	phosphate transport system-related protein
1364	 64.81	0	1592533..1593234	+	233	53719003	phoB	BPSL1364	-	phosphate regulon two-component system response regulator
1365	 66.44	0	1593304..1594614	+	436	53719004	-	BPSL1365	-	putative phosphate regulon two-component system sensor kinase
1366	 65.02	0	1594813..1597056	-	747	161723204	ppk	BPSL1366	-	polyphosphate kinase
1367	 68.59	0	1597104..1598663	+	519	53719006	-	BPSL1367	-	putative exopolyphosphatase
1368	 70.47	0	1598976..1599869	-	297	53719007	-	BPSL1368	-	hypothetical protein
1369	 71.79	0	1599935..1601008	+	357	53719008	-	BPSL1369	-	hypothetical protein
1370	 64.41	0	1601034..1601699	+	221	53719009	-	BPSL1370	-	hypothetical protein
1371	 66.85	0	1601862..1602416	+	184	53719010	-	BPSL1371A	-	hypothetical protein
1372	 62.45	-1	1603053..1603313	-	86	53719011	-	BPSL1372	-	hypothetical protein
1373	 60.58	-1	1603310..1603720	-	136	53719012	-	BPSL1373	-	hypothetical protein
1374	 69.70	0	1604281..1604742	+	153	53719013	-	BPSL1374	-	putative hydrolase
1375	 68.13	0	1604894..1605712	+	272	53719014	-	BPSL1375	-	hypothetical protein
1376	 61.74	-1	1606063..1606326	-	87	53719015	-	BPSL1376	-	hypothetical protein
1377	 72.92	+1	1606401..1606592	+	63	53719016	-	BPSL1377	-	putative lipoprotein
1378	 69.90	0	1606854..1608245	-	463	53719017	-	BPSL1378	-	putative membrane protein (DNA-damage-inducible protein)
1379	 63.53	0	1608253..1608603	-	116	53719018	-	BPSL1379	-	hypothetical protein
1380	 69.30	0	1608868..1610535	-	555	53719019	-	BPSL1380	-	putative acetyl-CoA synthetase
1381	 69.61	0	1610849..1611562	-	237	53719020	-	BPSL1381	-	peptidase
1382	 69.31	0	1611847..1612755	-	302	53719021	-	BPSL1382	-	hypothetical protein
1383	 65.22	0	1613303..1614133	+	276	53719022	uppP	BPSL1383	-	undecaprenyl pyrophosphate phosphatase
1384	 56.16	-2	1615048..1615761	-	237	53719023	-	BPSL1385	-	hypothetical protein
1385	 58.19	-1	1615770..1616276	-	168	53719024	-	BPSL1386	-	hypothetical protein
1386	 66.89	0	1616248..1616697	-	149	53719025	-	BPSL1387	-	hypothetical protein
1387	 68.06	0	1616714..1617217	-	167	53719026	-	BPSL1388	-	hypothetical protein
1388	 52.53	-2	1617923..1618318	-	131	53719027	-	BPSL1390	-	hypothetical protein
1389	 61.11	-1	1618835..1619068	-	77	53719028	-	BPSL1392	-	hypothetical protein
1390	 53.85	-2	1619144..1619650	-	168	53719029	-	BPSL1393	-	putative exported avidin family protein
1391	 66.03	0	1620853..1621476	-	207	53719030	-	BPSL1394	-	putative exported endonuclease
1392	 68.32	0	1621671..1622822	-	383	53719031	-	BPSL1395	-	histone deacetylase family protein
1393	 73.53	+1	1622837..1624030	-	397	53719032	-	BPSL1396	-	hypothetical protein
1394	 70.13	0	1624054..1625121	-	355	53719033	-	BPSL1397	-	putative porin signal peptide protein
1395	 68.84	0	1625452..1626600	+	382	53719034	-	BPSL1398	-	GerE family transcriptional regulator
1396	 74.16	+1	1626699..1627685	+	328	53719035	-	BPSL1399	-	2-dehydropantoate 2-reductase
1397	 67.11	0	1628075..1628524	-	149	53719036	-	BPSL1400	-	MarR family transcriptional regulator
1398	 76.20	+1	1628627..1629790	-	387	53719037	-	BPSL1401	-	putative kinase
1399	 64.30	0	1630243..1631592	+	449	53719038	tig	BPSL1402	-	trigger factor
1400	 63.91	0	1631727..1632380	+	217	53719039	clpP	BPSL1403	-	ATP-dependent Clp protease proteolytic subunit
1401	 61.64	-1	1632520..1633812	+	430	53719040	clpX	BPSL1404	-	ATP-dependent protease ATP-binding subunit
1402	 63.98	0	1634008..1636425	+	805	53719041	lon	BPSL1405	-	ATP-dependent protease
1403	 62.73	0	1637455..1637784	-	109	53719042	-	BPSL1406	-	hypothetical protein
1404	 71.69	0	1637967..1638185	+	72	53719043	-	BPSL1406A	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.