IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1233	 70.02	0	1421317..1422180	-	287	53718872	-	BPSL1237	-	enoyl-CoA hydratase
1234	 62.52	-1	1422330..1423004	+	224	53718873	-	BPSL1238	-	putative glutathione S-transferase related protein
1235	 66.58	0	1423224..1424378	-	384	53718874	-	BPSL1239	-	putative aminotransferase
1236	 74.74	+1	1424445..1425113	-	222	53718875	-	BPSL1240	-	hypothetical protein
1237	 66.03	0	1425171..1425953	+	260	53718876	-	BPSL1241	-	hypothetical protein
1238	 65.63	0	1426012..1427166	+	384	53718877	-	BPSL1242	-	peptidase
1239	 63.94	0	1427377..1428036	-	219	53718878	-	BPSL1243	-	hypothetical protein
1240	 68.59	0	1428157..1428831	-	224	53718879	-	BPSL1244	-	hypothetical protein
1241	 64.47	0	1428898..1429806	-	302	53718880	-	BPSL1245	-	putative transcriptional regulator
1242	 66.67	0	1429940..1431157	-	405	53718881	-	BPSL1246	-	hypothetical protein
1243	 65.24	0	1437846..1439735	+	629	53718882	-	BPSL1247	-	peptidase
1244	 63.04	0	1439881..1440954	-	357	53718883	-	BPSL1248	-	hypothetical protein
1245	 64.85	0	1441141..1442184	+	347	53718884	-	BPSL1249	-	AraC family transcriptional regulator
1246	 66.35	0	1442504..1443778	+	424	53718885	serA	BPSL1250	-	D-3-phosphoglycerate dehydrogenase
1247	 71.40	0	1444338..1444802	+	154	53718886	-	BPSL1251	-	putative transposase
1248	 68.13	0	1445222..1446247	-	341	53718887	-	BPSL1252	-	hypothetical protein
1249	 67.36	0	1447136..1448863	+	575	53718888	-	BPSL1253	-	putative integral membrane protein/sensor kinase
1250	 67.41	0	1449388..1450464	+	358	53718889	-	BPSL1254	-	hypothetical protein
1251	 59.18	-1	1450504..1450650	+	48	53718890	-	BPSL1255	-	hypothetical protein
1252	 71.69	0	1450878..1451594	+	238	53718891	-	BPSL1256	-	putative cytochrome c precursor
1253	 68.60	0	1451594..1452886	+	430	53718892	-	BPSL1257	-	putative cytochrome c precursor
1254	 67.76	0	1452894..1453076	+	60	53718893	-	BPSL1258	-	hypothetical protein
1255	 64.05	0	1453089..1453661	+	190	53718894	-	BPSL1259	-	putative cytochrome c oxidase subunit II related protein
1256	 65.56	0	1453648..1455273	+	541	53718895	-	BPSL1260	-	cytochrome c oxidase subunit 1
1257	 69.33	0	1455270..1456058	+	262	53718896	-	BPSL1261	-	putative cytochrome c related protein
1258	 69.42	0	1456647..1458101	-	484	53718897	-	BPSL1262	-	hypothetical protein
1259	 68.96	0	1458136..1459878	-	580	53718898	-	BPSL1263	-	hypothetical protein
1260	 64.85	0	1460171..1460719	+	182	53718899	-	BPSL1264	-	AhpC/TSA family protein
1261	 68.43	0	1461243..1461866	-	207	53718900	-	BPSL1265	-	hypothetical protein
1262	 68.45	0	1462488..1465790	-	1100	53718901	-	BPSL1266	-	putative transport system, membrane protein
1263	 67.37	0	1465791..1468901	-	1036	53718902	-	BPSL1267	-	putative transport system, membrane protein
1264	 70.10	0	1468915..1470252	-	445	53718903	-	BPSL1268	-	putative transport system, membrane protein
1265	 69.44	0	1470736..1471563	-	275	53718904	-	BPSL1269	-	IclR family transcriptional regulatory protein
1266	 68.25	0	1472111..1474072	-	653	53718905	-	BPSL1270	-	putative exported alkaline phosphatase
1267	 75.86	+1	1474323..1474844	+	173	53718906	-	BPSL1271	-	hypothetical protein
1268	 71.00	0	1474934..1475395	+	153	53718907	-	BPSL1272	-	hypothetical protein
1269	 70.49	0	1475662..1476288	+	208	53718908	-	BPSL1273	-	hypothetical protein
1270	 74.43	+1	1477083..1477739	-	218	53718909	-	BPSL1274	-	hypothetical protein
1271	 66.24	0	1477886..1478353	+	155	53718910	-	BPSL1275	-	AsnC family transcriptional regulator
1272	 72.69	+1	1478485..1479264	-	259	53718911	-	BPSL1276	-	putative ABC transport system, ATP-binding protein
1273	 74.96	+1	1479266..1480978	-	570	53718912	-	BPSL1277	-	ABC transporter membrane protein
1274	 69.22	0	1480968..1482023	-	351	53718913	-	BPSL1278	-	putative ABC transport system, iron-binding exported protein
1275	 63.33	0	1482263..1482442	+	59	53718914	-	BPSL1279	-	hypothetical protein
1276	 68.79	0	1482584..1483948	-	454	53718915	-	BPSL1280	-	putative amino acid transport system, membrane protein
1277	 67.28	0	1484133..1486409	-	758	53718916	-	BPSL1281	-	hypothetical protein
1278	 74.11	+1	1487013..1490357	+	1114	53718917	-	BPSL1282	-	putative exodeoxyribonuclease V gamma chain
1279	 72.96	+1	1490354..1494166	+	1270	53718918	-	BPSL1283	-	putative exodeoxyribonuclease V beta chain
1280	 75.53	+1	1494163..1496859	+	898	53718919	-	BPSL1284	-	putative exodeoxyribonuclease V alpha chain
1281	 68.40	0	1496856..1497260	+	134	53718920	-	BPSL1285	-	hypothetical protein
1282	 69.39	0	1497670..1498881	-	403	53718921	-	BPSL1286	-	hypothetical protein
1283	 69.99	0	1499926..1500858	-	310	53718922	-	BPSL1287	-	hypothetical protein
1284	 66.67	0	1501151..1501375	-	74	53718923	-	BPSL1288	-	putative lipoprotein
1285	 67.61	0	1501627..1501839	-	70	53718924	osmB	BPSL1289	-	osmotically inducible lipoprotein B precursor
1286	 65.94	0	1502063..1503994	-	643	53718925	thiC	BPSL1290	-	thiamine biosynthesis protein ThiC
1287	 69.72	0	1504266..1504625	-	119	53718926	-	BPSL1290a	-	hypothetical protein
1288	 59.45	-1	1504644..1504934	+	96	53718927	-	BPSL1291	-	hypothetical protein
1289	 75.27	+1	1505095..1505919	+	274	53718928	-	BPSL1292	-	hypothetical protein
1290	 68.81	0	1506336..1507082	+	248	53718929	-	BPSL1293	-	hypothetical protein
1291	 65.28	0	1507098..1507889	+	263	53718930	-	BPSL1294	-	hypothetical protein
1292	 71.79	0	1508343..1509278	+	311	53718931	-	BPSL1295	-	hypothetical protein
1293	 73.02	+1	1509665..1510861	-	398	53718932	-	BPSL1296	-	hypothetical protein
1294	 70.98	0	1511140..1511928	+	262	53718933	-	BPSL1297	-	hypothetical protein
1295	 71.05	0	1512096..1512506	+	136	53718934	-	BPSL1298	-	hypothetical protein
1296	 71.26	0	1512862..1513689	-	275	53718935	-	BPSL1299	-	putative phosphodiesterase
1297	 72.40	+1	1513884..1514912	-	342	53718936	-	BPSL1300	-	putative ABC transport system, ATP-binding protein
1298	 72.90	+1	1515088..1516002	-	304	53718937	-	BPSL1301	-	putative ABC transport system, membrane protein
1299	 69.58	0	1517203..1518027	-	274	53718938	-	BPSL1302	-	hypothetical protein
1300	 67.04	0	1518129..1519190	-	353	53718939	-	BPSL1303	-	hypothetical protein
1301	 72.27	+1	1519247..1520281	-	344	53718940	-	BPSL1304	-	LacI family transcriptional regulator
1302	 71.92	0	1520978..1521415	-	145	53718941	-	BPSL1304A	-	hypothetical protein
1303	 67.34	0	1521614..1522060	-	148	53718942	-	BPSL1304B	-	hypothetical protein
1304	 69.09	0	1522632..1523786	-	384	53718943	-	BPSL1305	-	hypothetical protein
1305	 65.93	0	1524128..1525492	-	454	53718944	-	BPSL1306	-	hypothetical protein
1306	 65.51	0	1526205..1526807	+	200	53718945	-	BPSL1307	-	hypothetical protein
1307	 72.93	+1	1526860..1527657	+	265	53718946	-	BPSL1308	-	hypothetical protein
1308	 69.33	0	1528053..1528691	-	212	53718947	-	BPSL1309	-	hypothetical protein
1309	 74.45	+1	1528813..1530354	+	513	53718948	-	BPSL1310	-	GntR family regulatory protein
1310	 68.08	0	1530602..1531096	-	164	53718949	-	BPSL1311	-	AsnC family transcriptional regulator
1311	 69.61	0	1531255..1533156	+	633	53718950	glmS2	BPSL1312	-	glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2
1312	 72.97	+1	1533366..1534697	-	443	53718951	-	BPSL1313	-	putative dioxygenase
1313	 75.32	+1	1534719..1535423	-	234	53718952	-	BPSL1314	-	hypothetical protein
1314	 69.78	0	1535587..1536486	-	299	53718953	-	BPSL1315	-	LysR family transcriptional regulator
1315	 67.57	0	1536737..1537507	+	256	53718954	-	BPSL1316	-	short chain dehydrogenase
1316	 73.56	+1	1537725..1539116	-	463	53718955	-	BPSL1317	-	putative lipoprotein
1317	 72.30	+1	1539500..1539907	-	135	53718956	-	BPSL1318	-	hypothetical protein
1318	 70.35	0	1539904..1541721	-	605	53718957	-	BPSL1319	-	putative nitrite/sulfite reductase
1319	 63.59	0	1542263..1542457	+	64	53718958	-	BPSL1320	-	hypothetical protein
1320	 69.85	0	1542534..1544009	-	491	53718959	-	BPSL1321	-	GntR family transcriptional regulator
1321	 68.16	0	1544714..1545115	-	133	53718960	-	BPSL1322	-	putative heat shock protein
1322	 65.30	0	1545147..1545584	-	145	53718961	-	BPSL1323	-	putative heat shock protein
1323	 66.98	0	1545977..1546300	+	107	53718962	-	BPSL1323a	-	hypothetical protein
1324	 68.86	0	1547220..1549085	+	621	53718963	pckG	BPSL1324	-	phosphoenolpyruvate carboxykinase
1325	 69.56	0	1549366..1550298	+	310	53718964	-	BPSL1325	-	putative 3-hydroxyacyl-CoA dehydrogenase
1326	 72.44	+1	1550869..1551717	-	282	53718965	-	BPSL1326	-	LysR family transcriptional regulator
1327	 70.45	0	1551987..1552382	+	131	53718966	-	BPSL1327	-	putative malonate transport-related system membrane protein
1328	 71.81	0	1552405..1553163	+	252	53718967	-	BPSL1328	-	putative malonate transport-related system membrane protein
1329	 70.61	0	1553456..1555102	+	548	53718968	-	BPSL1329	-	putative malonate decarboxylase alpha-subunit
1330	 71.38	0	1555116..1555433	+	105	53718969	-	BPSL1330	-	malonate decarboxylase subunit delta
1331	 75.32	+1	1555430..1556377	+	315	53718970	-	BPSL1331	-	malonate decarboxylase subunit beta
1332	 74.10	+1	1556364..1557089	+	241	53718971	-	BPSL1332	-	putative malonate decarboxylase gamma-subunit
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.