IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1149	 61.27	-1	1334094..1334297	-	67	53718788	-	BPSL1153	-	hypothetical protein
1150	 61.11	-1	1334456..1334761	-	101	53718789	-	BPSL1153A	-	hypothetical protein
1151	 58.66	-1	1334758..1335144	-	128	53718790	-	BPSL1154	-	hypothetical protein
1152	 65.37	0	1335125..1335355	-	76	53718791	-	BPSL1155	-	hypothetical protein
1153	 50.00	-2	1335523..1335978	-	151	53718792	-	BPSL1156	-	hypothetical protein
1154	 60.95	-1	1336223..1337464	-	413	53718793	-	BPSL1157	-	putative phage integrase
1155	 65.58	0	1337638..1339104	-	488	53718794	cafA	BPSL1158	-	ribonuclease G
1156	 73.97	+1	1339113..1339742	-	209	53718795	maf	BPSL1159	-	Maf-like protein
1157	 71.13	0	1339795..1340265	-	156	53718796	-	BPSL1160	-	SPOUT methyltransferase superfamily protein
1158	 69.68	0	1340322..1340786	-	154	53718797	-	BPSL1161	-	hypothetical protein
1159	 75.03	+1	1340791..1341543	-	250	53718798	-	BPSL1162	-	nicotinic acid mononucleotide adenylyltransferase
1160	 69.26	0	1341540..1342463	-	307	53718799	hemF	BPSL1163	-	coproporphyrinogen III oxidase
1161	 68.15	0	1342594..1343871	-	425	53718800	purD	BPSL1164	-	phosphoribosylamine--glycine ligase
1162	 64.47	0	1343982..1344710	-	242	53718801	-	BPSL1165	-	hypothetical protein
1163	 66.67	0	1345220..1345870	-	216	53718802	upp	BPSL1166	-	uracil phosphoribosyltransferase
1164	 72.82	+1	1346128..1346907	+	259	53718803	-	BPSL1167	-	putative dehydrogenase
1165	 71.25	0	1347137..1347529	+	130	53718804	mgsA	BPSL1168	-	methylglyoxal synthase
1166	 69.03	0	1348381..1349355	+	324	53718805	qor	BPSL1169	-	quinone oxidoreductase
1167	 60.22	-1	1349820..1349912	+	30	53718806	-	BPSL1170	-	hypothetical protein
1168	 68.10	0	1349909..1351717	+	602	53718807	kdpA	BPSL1171	-	potassium-transporting ATPase subunit A
1169	 67.98	0	1351813..1353873	+	686	53718808	kdpB	BPSL1172	-	potassium-transporting ATPase b chain
1170	 70.62	0	1353886..1354467	+	193	53718809	kdpC	BPSL1173	-	potassium-transporting ATPase c chain
1171	 72.17	0	1354752..1357733	+	993	53718810	kdpD	BPSL1174	-	two-component system, sensor kinase protein KdpD
1172	 69.67	0	1357726..1358424	+	232	53718811	kdpE	BPSL1175	-	two-component system, regulatory protein KdpE
1173	 67.34	0	1358812..1359108	+	98	53718812	-	BPSL1176	-	hypothetical protein
1174	 68.54	0	1359324..1359644	+	106	53718813	sugE	BPSL1177	-	putative chaperone
1175	 69.90	0	1359836..1360453	+	205	53718814	-	BPSL1178	-	hypothetical protein
1176	 74.16	+1	1360450..1363092	+	880	53718815	-	BPSL1179	-	hypothetical protein
1177	 66.89	0	1363156..1363602	+	148	53718816	-	BPSL1180	-	putative globin
1178	 70.77	0	1363713..1364444	+	243	53718817	-	BPSL1181	-	putative alanyl-tRNA synthetase
1179	 73.52	+1	1364441..1365082	+	213	53718818	-	BPSL1182	-	hypothetical protein
1180	 73.41	+1	1365426..1366820	+	464	53718819	-	BPSL1183	-	amidase
1181	 71.07	0	1367068..1368384	+	438	53718820	-	BPSL1184	-	putative sugar-related transport, membrane protein
1182	 71.33	0	1368695..1370602	-	635	53718821	-	BPSL1185	-	hypothetical protein
1183	 74.02	+1	1371117..1371932	-	271	53718822	-	BPSL1186	-	glucose-1-dehydrogenase
1184	 67.35	0	1372307..1372894	-	195	53718823	-	BPSL1187	-	putative decarboxylase
1185	 60.14	-1	1372891..1373610	-	239	53718824	-	BPSL1188	-	TetR family transcriptional regulator
1186	 69.64	0	1373847..1374317	-	156	53718825	-	BPSL1189	-	putative kinase
1187	 69.18	0	1374401..1375435	-	344	53718826	-	BPSL1190	-	putative glycosyltransferase
1188	 65.39	0	1375457..1376395	-	312	53718827	-	BPSL1191	-	hypothetical protein
1189	 75.21	+1	1376486..1376953	-	155	53718828	-	BPSL1192	-	hypothetical protein
1190	 71.03	0	1377002..1377757	-	251	53718829	-	BPSL1193	-	hypothetical protein
1191	 73.52	+1	1377788..1378210	-	140	53718830	-	BPSL1194	-	hypothetical protein
1192	 62.21	-1	1378207..1378767	-	186	53718831	-	BPSL1195	-	RNA polymerase factor sigma-70
1193	 63.66	0	1379163..1380926	+	587	53718832	ilvI	BPSL1196	-	acetolactate synthase 3 catalytic subunit
1194	 60.77	-1	1381038..1381529	+	163	53718833	ilvH	BPSL1197	-	acetolactate synthase 3 regulatory subunit
1195	 65.49	0	1381612..1382628	+	338	53718834	ilvC	BPSL1198	-	ketol-acid reductoisomerase
1196	 66.36	0	1382750..1383400	+	216	53718835	-	BPSL1199	-	phosphatidylserine decarboxylase
1197	 69.30	0	1383417..1384289	+	290	53718836	-	BPSL1200	-	putative phosphatidyltransferase
1198	 64.79	0	1384648..1386195	+	515	53718837	leuA	BPSL1201	-	2-isopropylmalate synthase
1199	 68.54	0	1386330..1387877	-	515	53718838	-	BPSL1202	-	putative transport-related membrane protein
1200	 71.70	0	1387935..1388570	-	211	53718839	-	BPSL1203	-	putative carbonic anhydrase
1201	 64.47	0	1389014..1389514	-	166	53718840	-	BPSL1204	-	putative lipoprotein
1202	 70.11	0	1389893..1391170	+	425	53718841	-	BPSL1205	-	putative amino acid transport system, exported protein
1203	 62.59	-1	1391276..1391545	+	89	53718842	rpsO	BPSL1206	-	30S ribosomal protein S15
1204	 65.87	0	1391849..1393990	+	713	53718843	pnp	BPSL1207	-	polynucleotide phosphorylase/polyadenylase
1205	 69.51	0	1394106..1395125	+	339	53718844	-	BPSL1208	-	putative oxidoreductase
1206	 71.69	0	1395230..1395985	+	251	53718845	tpiA	BPSL1209	-	triosephosphate isomerase
1207	 67.46	0	1396065..1396442	+	125	53718846	secG	BPSL1210	-	preprotein translocase subunit SecG
1208	 56.39	-2	1396791..1397150	+	119	53718847	nuoA	BPSL1211	-	NADH dehydrogenase subunit A
1209	 65.71	0	1397171..1397692	+	173	53718848	nuoB	BPSL1212	-	NADH dehydrogenase subunit B
1210	 63.52	0	1397713..1398315	+	200	53718849	nuoC	BPSL1213	-	NADH dehydrogenase subunit C
1211	 62.60	-1	1398326..1399579	+	417	53718850	nuoD	BPSL1214	-	NADH dehydrogenase subunit D
1212	 60.91	-1	1399748..1400233	+	161	53718851	-	BPSL1215	-	NADH dehydrogenase subunit E
1213	 66.06	0	1400230..1401540	+	436	53718852	nuoF	BPSL1216	-	NADH dehydrogenase I chain F
1214	 68.47	0	1401623..1403953	+	776	53718853	-	BPSL1217	-	NADH dehydrogenase subunit G
1215	 63.57	0	1403954..1405018	+	354	53718854	nuoH	BPSL1218	-	NADH dehydrogenase subunit H
1216	 61.76	-1	1405034..1405522	+	162	53718855	-	BPSL1219	-	NADH dehydrogenase subunit I
1217	 65.45	0	1405632..1406288	+	218	53718856	nuoJ	BPSL1220	-	NADH dehydrogenase subunit J
1218	 56.86	-2	1406307..1406612	+	101	53718857	nuoK	BPSL1221	-	NADH dehydrogenase subunit K
1219	 63.68	0	1406630..1408669	+	679	53718858	nuoL	BPSL1222	-	NADH dehydrogenase subunit L
1220	 62.84	0	1408685..1410175	+	496	53718859	nuoM	BPSL1223	-	NADH dehydrogenase subunit M
1221	 65.72	0	1410200..1411672	+	490	53718860	nuoN	BPSL1224	-	NADH dehydrogenase subunit N
1222	 61.11	-1	1411672..1411977	+	101	53718861	-	BPSL1225	-	hypothetical protein
1223	 63.62	0	1412014..1412604	+	196	53718862	-	BPSL1226	-	hypothetical protein
1224	 68.09	0	1412756..1413178	+	140	53718863	-	BPSL1227	-	hypothetical protein
1225	 66.42	0	1413239..1414435	+	398	53718864	-	BPSL1228	-	putative acyl-CoA dehydrogenase family protein
1226	 72.05	0	1414447..1415580	+	377	53718865	-	BPSL1229	-	putative acyl-CoA dehydrogenase family protein
1227	 62.75	0	1415621..1416079	+	152	53718866	-	BPSL1230	-	hypothetical protein
1228	 68.94	0	1416076..1416558	+	160	53718867	-	BPSL1231	-	hypothetical protein
1229	 69.20	0	1416651..1417913	+	420	53718868	-	BPSL1233	-	putative lipoprotein
1230	 68.70	0	1418190..1419416	-	408	53718869	-	BPSL1234	-	putative acyl-CoA dehydrogenase family protein
1231	 68.83	0	1419460..1420566	-	368	53718870	-	BPSL1235	-	putative phosphotransferase
1232	 68.77	0	1420594..1421307	-	237	53718871	-	BPSL1236	-	putative phosphoglycerate mutase
1233	 70.02	0	1421317..1422180	-	287	53718872	-	BPSL1237	-	enoyl-CoA hydratase
1234	 62.52	-1	1422330..1423004	+	224	53718873	-	BPSL1238	-	putative glutathione S-transferase related protein
1235	 66.58	0	1423224..1424378	-	384	53718874	-	BPSL1239	-	putative aminotransferase
1236	 74.74	+1	1424445..1425113	-	222	53718875	-	BPSL1240	-	hypothetical protein
1237	 66.03	0	1425171..1425953	+	260	53718876	-	BPSL1241	-	hypothetical protein
1238	 65.63	0	1426012..1427166	+	384	53718877	-	BPSL1242	-	peptidase
1239	 63.94	0	1427377..1428036	-	219	53718878	-	BPSL1243	-	hypothetical protein
1240	 68.59	0	1428157..1428831	-	224	53718879	-	BPSL1244	-	hypothetical protein
1241	 64.47	0	1428898..1429806	-	302	53718880	-	BPSL1245	-	putative transcriptional regulator
1242	 66.67	0	1429940..1431157	-	405	53718881	-	BPSL1246	-	hypothetical protein
1243	 65.24	0	1437846..1439735	+	629	53718882	-	BPSL1247	-	peptidase
1244	 63.04	0	1439881..1440954	-	357	53718883	-	BPSL1248	-	hypothetical protein
1245	 64.85	0	1441141..1442184	+	347	53718884	-	BPSL1249	-	AraC family transcriptional regulator
1246	 66.35	0	1442504..1443778	+	424	53718885	serA	BPSL1250	-	D-3-phosphoglycerate dehydrogenase
1247	 71.40	0	1444338..1444802	+	154	53718886	-	BPSL1251	-	putative transposase
1248	 68.13	0	1445222..1446247	-	341	53718887	-	BPSL1252	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.