IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.43   STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1033	 63.77	0	1201931..1202620	-	229	53718672	hisQ	BPSL1032	-	histidine transport system permease protein
1034	 65.89	0	1202831..1203607	-	258	53718673	hisJ	BPSL1033	-	histidine-binding periplasmic protein precursor
1035	 72.25	+1	1204000..1204698	+	232	53718674	-	BPSL1034	-	hypothetical protein
1036	 68.38	0	1205046..1205744	-	232	53718675	-	BPSL1035	-	hypothetical protein
1037	 69.56	0	1205833..1206558	+	241	53718676	-	BPSL1036	-	putative two-component system, response regulator
1038	 72.83	+1	1206542..1207855	+	437	53718677	-	BPSL1037	-	putative two-component system, sensor kinase
1039	 58.80	-1	1207929..1208195	-	88	53718678	-	BPSL1038	-	hypothetical protein
1040	 69.57	0	1208322..1208597	-	91	53718679	-	BPSL1038a	-	hypothetical protein
1041	 66.04	0	1208692..1210449	+	585	53718680	-	BPSL1039	-	putative ABC transport system, membrane protein
1042	 68.83	0	1210503..1211843	+	446	53718681	-	BPSL1040	-	putative ABC transport system, ATP-binding protein
1043	 75.31	+1	1212010..1212171	-	53	53718682	-	BPSL1041	-	hypothetical protein
1044	 73.57	+1	1212228..1212734	-	168	53718683	-	BPSL1042	-	putative lipoprotein
1045	 71.92	0	1212731..1213282	-	183	53718684	-	BPSL1043	-	putative lipoprotein
1046	 67.44	0	1213901..1215319	+	472	53718685	otsA	BPSL1044	-	alpha,alpha-trehalose-phosphate synthase
1047	 71.97	0	1215312..1215914	+	200	53718686	-	BPSL1045	-	hypothetical protein
1048	 70.75	0	1216087..1216698	-	203	53718687	-	BPSL1046	-	hypothetical protein
1049	 74.81	+1	1217068..1217325	+	85	53718688	-	BPSL1047	-	hypothetical protein
1050	 71.57	0	1217526..1218953	-	475	53718689	-	BPSL1048	-	putative sugar transport, integral membrane protein
1051	 66.28	0	1219023..1219535	-	170	53718690	-	BPSL1049	-	hypothetical protein
1052	 69.29	0	1220110..1220490	-	126	53718691	-	BPSL1050	-	hypothetical protein
1053	 72.44	+1	1221524..1221904	-	126	53718692	-	BPSL1053	-	putative lipoprotein
1054	 66.48	0	1222077..1222616	+	179	53718693	eco	BPSL1054	-	ecotin precursor
1055	 69.92	0	1222714..1223850	-	378	53718694	-	BPSL1055	-	murein-DD-endopeptidase
1056	 63.94	0	1224788..1225264	+	158	53718695	-	BPSL1057	-	hypothetical protein
1057	 63.86	0	1227014..1227298	+	94	53718696	-	BPSL1059	-	hypothetical protein
1058	 64.69	0	1227309..1227611	+	100	53718697	-	BPSL1060	-	hypothetical protein
1059	 63.93	0	1227608..1227826	+	72	53718698	-	BPSL1061	-	hypothetical protein
1060	 59.18	-1	1228340..1228606	+	88	53718699	infA	BPSL1062	-	translation initiation factor IF-1
1061	 67.54	0	1228626..1228970	+	114	53718700	-	BPSL1063	-	hypothetical protein
1062	 65.05	0	1229071..1229997	-	308	53718701	-	BPSL1064	-	putative dehydrogenase
1063	 66.10	0	1230018..1231604	-	528	53718702	-	BPSL1065	-	hypothetical protein
1064	 60.11	-1	1232050..1232232	-	60	53718703	rubA	BPSL1066	-	rubredoxin
1065	 65.35	0	1232690..1233145	+	151	53718704	-	BPSL1067	-	hypothetical protein
1066	 69.39	0	1233313..1235259	+	648	53718705	-	BPSL1068	-	putative ABC transport system, ATP-binding protein
1067	 66.82	0	1235465..1237447	+	660	53718706	parE	BPSL1069	-	DNA topoisomerase IV subunit B
1068	 68.95	0	1237506..1239824	+	772	53718707	parC	BPSL1070	-	DNA topoisomerase IV subunit A
1069	 68.19	0	1240517..1240975	+	152	53718708	-	BPSL1071	-	hypothetical protein
1070	 71.41	0	1241121..1242005	-	294	53718709	-	BPSL1072	-	LysR family transcriptional regulator
1071	 66.67	0	1242099..1242566	+	155	53718710	-	BPSL1073	-	hypothetical protein
1072	 66.67	0	1242775..1243737	-	320	53718711	-	BPSL1074	-	LysR family transcriptional regulator
1073	 70.40	0	1243953..1245266	+	437	53718712	-	BPSL1075	-	putative transport system, integral membrane protein
1074	 73.40	+1	1245268..1246530	+	420	53718713	-	BPSL1076	-	allantoate amidohydrolase
1075	 69.20	0	1246813..1247838	+	341	53718714	-	BPSL1078	-	putative aminohydrolase
1076	 71.36	0	1248218..1249411	-	397	53718715	-	BPSL1079	-	putative metal transport integral membrane protein
1077	 66.75	0	1249558..1251918	-	786	53718716	-	BPSL1080	-	hypothetical protein
1078	 75.67	+1	1252138..1253037	-	299	53718717	-	BPSL1081	-	putative phenazine biosynthesis-like protein
1079	 64.96	0	1253042..1253509	-	155	53718718	-	BPSL1082	-	hypothetical protein
1080	 69.08	0	1253565..1254767	-	400	53718719	-	BPSL1083	-	putative aminotransferase
1081	 73.60	+1	1254807..1255715	-	302	53718720	-	BPSL1084	-	hypothetical protein
1082	 73.98	+1	1255816..1256499	-	227	53718721	-	BPSL1085	-	hypothetical protein
1083	 69.80	0	1256635..1258104	+	489	53718722	-	BPSL1086	-	GntR family regulatory protein
1084	 64.19	0	1258240..1260138	+	632	53718723	htpG	BPSL1087	-	heat shock protein 90
1085	 75.76	+1	1260147..1260740	+	197	53718724	-	BPSL1088	-	hypothetical protein
1086	 68.12	0	1260737..1261216	+	159	53718725	-	BPSL1089	-	hypothetical protein
1087	 67.74	0	1261467..1262396	+	309	53718726	-	BPSL1091	-	hypothetical protein
1088	 61.25	-1	1262588..1262827	+	79	53718727	-	BPSL1092	-	hypothetical protein
1089	 65.96	0	1262824..1264374	+	516	53718728	-	BPSL1093	-	hypothetical protein
1090	 62.99	0	1264502..1264936	-	144	53718729	-	BPSL1094	-	hypothetical protein
1091	 64.68	0	1265301..1266254	-	317	53718730	talB	BPSL1095	-	transaldolase B
1092	 71.18	0	1266656..1267873	-	405	53718731	-	BPSL1096	-	putative transport related membrane protein
1093	 65.31	0	1267966..1269141	-	391	53718732	-	BPSL1097	-	hypothetical protein
1094	 64.65	0	1269354..1270196	-	280	53718733	-	BPSL1098	-	hypothetical protein
1095	 62.78	0	1270430..1270789	+	119	53718734	-	BPSL1099	-	putative cytochrome C precursor-related protein
1096	 65.04	0	1270830..1271198	+	122	53718735	-	BPSL1100	-	putative cytochrome C precursor-related protein
1097	 67.57	0	1271697..1272248	-	183	53718736	-	BPSL1101	-	hypothetical protein
1098	 74.04	+1	1272686..1273756	+	356	53718737	-	BPSL1102	-	hypothetical protein
1099	 65.43	0	1273889..1274533	-	214	53718738	nth	BPSL1103	-	endonuclease III
1100	 73.42	+1	1274538..1275410	-	290	53718739	-	BPSL1104	-	ferredoxin
1101	 61.93	-1	1275668..1276300	+	210	53718740	-	BPSL1105	-	TetR family regulatory protein
1102	 66.33	0	1276435..1277901	-	488	53718741	-	BPSL1106	-	putative depolymerase/histone-like protein
1103	 70.10	0	1278121..1279953	-	610	53718742	-	BPSL1107	-	hypothetical protein
1104	 69.01	0	1280130..1281365	+	411	53718743	-	BPSL1108	-	hypothetical protein
1105	 74.34	+1	1281716..1287241	-	1841	53718744	-	BPSL1109	-	hypothetical protein
1106	 72.03	0	1287413..1287934	-	173	53718745	-	BPSL1110	-	putative lipoprotein
1107	 71.93	0	1288695..1289909	+	404	53718746	purT	BPSL1111	-	phosphoribosylglycinamide formyltransferase 2
1108	 72.07	0	1290012..1290233	+	73	53718747	-	BPSL1112	-	putative lipoprotein
1109	 72.61	+1	1290292..1290678	+	128	53718748	-	BPSL1113	-	hypothetical protein
1110	 68.94	0	1291364..1292812	+	482	53718749	rhlE2	BPSL1114	-	putative ATP-dependent RNA helicase 2
1111	 74.16	+1	1293310..1294203	-	297	53718750	-	BPSL1115	-	glutamyl-Q tRNA(Asp) synthetase
1112	 67.11	0	1294247..1295146	-	299	53718751	-	BPSL1116	-	hypothetical protein
1113	 66.98	0	1295759..1299283	+	1174	53718752	dnaE	BPSL1117	-	DNA polymerase III subunit alpha
1114	 65.10	0	1299323..1301113	+	596	53718753	-	BPSL1118	-	putative ABC transport system, ATP-binding protein
1115	 68.88	0	1301167..1302249	+	360	53718754	-	BPSL1119	-	putative LPS biosynthesis-related protein
1116	 69.98	0	1302531..1303676	+	381	53718755	-	BPSL1120	-	putative transferase (LPS biosynthesis-related)
1117	 67.44	0	1303673..1304971	+	432	53718756	-	BPSL1121	-	hypothetical protein
1118	 70.23	0	1304968..1306230	+	420	53718757	-	BPSL1122	-	putative glycosyl transferase (LPS biosynthesis-related)
1119	 69.11	0	1306305..1307489	+	394	53718758	-	BPSL1123	-	putative LPS core biosynthesis-related protein
1120	 72.28	+1	1307464..1307730	-	88	53718759	-	BPSL1123b	-	hypothetical protein
1121	 65.49	0	1307754..1308518	-	254	53718760	-	BPSL1124	-	putative LPS biosynthesis-related protein
1122	 70.34	0	1308976..1309356	+	126	53718761	-	BPSL1125	-	hypothetical protein
1123	 67.00	0	1309637..1310230	-	197	53718762	-	BPSL1126	-	hypothetical protein
1124	 70.76	0	1310507..1311775	-	422	53718763	-	BPSL1127	-	putative ABC transport system, integral membrane protein
1125	 74.90	+1	1311772..1312755	-	327	53718764	-	BPSL1128	-	putative lipoprotein
1126	 64.02	0	1313442..1313894	-	150	53718765	-	BPSL1129	-	hypothetical protein
1127	 70.02	0	1314397..1315290	-	297	53718766	-	BPSL1130	-	putative sigma factor
1128	 65.31	0	1316037..1316330	-	97	53718767	-	BPSL1132	-	hypothetical protein
1129	 70.90	0	1317018..1317371	+	117	53718768	-	BPSL1133	-	hypothetical protein
1130	 71.22	0	1318558..1319238	+	226	53718769	-	BPSL1134	-	hypothetical protein
1131	 65.24	0	1319300..1320697	+	465	53718770	-	BPSL1135	-	hypothetical protein
1132	 69.11	0	1320725..1322113	-	462	53718771	-	BPSL1136	-	hypothetical protein
67.43	MEAN

4.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.