IslandPathversion 1.0

IslandPath Analysis: Burkholderia pseudomallei K96243



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.43 STD DEV: 4.78
Burkholderia pseudomallei K96243 chromosome 1, complete sequence - 1..4074542
3399 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
984	 74.83	+1	1139494..1140093	+	199	53718623	-	BPSL0981	-	phosphoglycerate mutase family protein
985	 62.84	0	1140236..1141072	-	278	53718624	-	BPSL0982	-	hypothetical protein
986	 72.45	+1	1141238..1142170	-	310	53718625	btuF	BPSL0983	-	putaive vitamin B12 transport protein
987	 75.97	+1	1142176..1143228	-	350	53718626	cobC	BPSL0984	-	putative threonine-phosphate decarboxylase
988	 77.25	+2	1143221..1144165	-	314	53718627	cobD	BPSL0985	-	cobalamin biosynthesis protein
989	 73.48	+1	1144159..1144716	-	185	53718628	-	BPSL0986	-	putative bifunctional cobalamin biosynthesis protein
990	 72.42	+1	1144873..1146333	+	486	53718629	cobQ	BPSL0987	-	cobyric acid synthase
991	 71.46	0	1146614..1147030	+	138	53718630	-	BPSL0988	-	hypothetical protein
992	 67.31	0	1147399..1148022	+	207	53718631	-	BPSL0989	-	ParA family ATPase
993	 61.76	-1	1148137..1148523	-	128	53718632	panD	BPSL0990	-	aspartate alpha-decarboxylase
994	 68.33	0	1148576..1149415	-	279	53718633	panC	BPSL0991	-	pantoate--beta-alanine ligase
995	 66.67	0	1150167..1151042	-	291	53718634	-	BPSL0992	-	hypothetical protein
996	 60.85	-1	1151047..1151235	-	62	53718635	-	BPSL0993	-	hypothetical protein
997	 68.54	0	1151442..1153259	+	605	53718636	-	BPSL0994	-	hypothetical protein
998	 72.88	+1	1153273..1157391	+	1372	53718637	-	BPSL0995	-	hypothetical protein
999	 68.21	0	1157739..1158449	+	236	53718638	-	BPSL0996	-	hypothetical protein
1000	 69.63	0	1158446..1159459	+	337	53718639	-	BPSL0997	-	putative methyltransferase
1001	 67.08	0	1159815..1161992	-	725	53718640	metG	BPSL0998	-	methionyl-tRNA synthetase
1002	 69.75	0	1162474..1163121	-	215	53718641	-	BPSL0999	-	OmpA family transmembrane protein
1003	 69.88	0	1163502..1164590	+	362	53718642	-	BPSL1000	-	putative ATP-binding protein
1004	 73.70	+1	1164723..1165262	+	179	53718643	-	BPSL1001	-	putative membrane-attached superoxide dismutase
1005	 60.88	-1	1165366..1165935	+	189	53718644	dcd	BPSL1002	-	deoxycytidine triphosphate deaminase
1006	 65.04	0	1166038..1168317	+	759	53718645	-	BPSL1003	-	putative ornithine decarboxylase
1007	 73.72	+1	1168320..1169042	+	240	53718646	-	BPSL1004	-	hypothetical protein
1008	 73.78	+1	1169176..1169850	-	224	53718647	-	BPSL1005	-	putative hydrolase
1009	 68.16	0	1169883..1171292	-	469	53718648	argH	BPSL1006	-	argininosuccinate lyase
1010	 71.79	0	1171461..1173761	-	766	53718649	-	BPSL1007	-	putative fimbriae usher protein
1011	 73.14	+1	1174516..1175226	-	236	53718650	-	BPSL1008	-	putative exported fimbriae-related chaperone
1012	 64.74	0	1175234..1175752	-	172	53718651	-	BPSL1009	-	hypothetical protein
1013	 67.98	0	1176147..1177136	+	329	53718652	-	BPSL1010	-	putative lipoprotein
1014	 72.30	+1	1177309..1178124	-	271	53718653	-	BPSL1011	-	putative DNA-binding protein
1015	 71.96	0	1178289..1179062	+	257	53718654	-	BPSL1012	-	putative biotin biosyntehsis related protein
1016	 70.32	0	1179480..1182464	-	994	53718655	-	BPSL1013	-	phosphoenolpyruvate carboxylase
1017	 72.22	+1	1182577..1182756	+	59	53718656	-	BPSL1014	-	hypothetical protein
1018	 73.03	+1	1182791..1183780	+	329	53718657	hemC	BPSL1015	-	porphobilinogen deaminase
1019	 70.50	0	1183777..1185759	+	660	53718658	-	BPSL1016	-	bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase
1020	 71.03	0	1185764..1186954	+	396	53718659	-	BPSL1017	-	putative porphyrin biosynthesis related protein
1021	 67.66	0	1187123..1188430	-	435	53718660	-	BPSL1018	-	putative permease transmembrane protein
1022	 70.09	0	1188469..1189227	-	252	53718661	-	BPSL1019	-	3-ketoacyl-(acyl-carrier-protein) reductase
1023	 72.92	+1	1189316..1190755	-	479	53718662	-	BPSL1020	-	putative aldehyde dehydrogenase
1024	 63.26	0	1190916..1191443	+	175	53718663	ppa	BPSL1021	-	inorganic pyrophosphatase
1025	 73.07	+1	1191502..1192266	-	254	53718664	-	BPSL1022	-	hypothetical protein
1026	 69.89	0	1193265..1194443	-	392	53718665	-	BPSL1025	-	hypothetical protein
1027	 69.61	0	1194534..1196264	+	576	53718666	nadE	BPSL1026	-	NAD synthetase
1028	 62.83	0	1196325..1196663	+	112	53718667	glnB2	BPSL1027	-	nitrogen regulatory protein P-II 2
1029	 62.33	-1	1197036..1198256	-	406	53718668	tnpA	BPSL1028	-	transposase
1030	 65.21	0	1198437..1199537	-	366	53718669	-	BPSL1029	-	putative exported outer membrane porin protein
1031	 65.51	0	1200419..1201198	-	259	53718670	hisP	BPSL1030	-	histidine transport ATP-binding protein
1032	 64.29	0	1201221..1201934	-	237	53718671	hisM	BPSL1031	-	histidine transport system permease protein
1033	 63.77	0	1201931..1202620	-	229	53718672	hisQ	BPSL1032	-	histidine transport system permease protein
1034	 65.89	0	1202831..1203607	-	258	53718673	hisJ	BPSL1033	-	histidine-binding periplasmic protein precursor
1035	 72.25	+1	1204000..1204698	+	232	53718674	-	BPSL1034	-	hypothetical protein
1036	 68.38	0	1205046..1205744	-	232	53718675	-	BPSL1035	-	hypothetical protein
1037	 69.56	0	1205833..1206558	+	241	53718676	-	BPSL1036	-	putative two-component system, response regulator
1038	 72.83	+1	1206542..1207855	+	437	53718677	-	BPSL1037	-	putative two-component system, sensor kinase
1039	 58.80	-1	1207929..1208195	-	88	53718678	-	BPSL1038	-	hypothetical protein
1040	 69.57	0	1208322..1208597	-	91	53718679	-	BPSL1038a	-	hypothetical protein
1041	 66.04	0	1208692..1210449	+	585	53718680	-	BPSL1039	-	putative ABC transport system, membrane protein
1042	 68.83	0	1210503..1211843	+	446	53718681	-	BPSL1040	-	putative ABC transport system, ATP-binding protein
1043	 75.31	+1	1212010..1212171	-	53	53718682	-	BPSL1041	-	hypothetical protein
1044	 73.57	+1	1212228..1212734	-	168	53718683	-	BPSL1042	-	putative lipoprotein
1045	 71.92	0	1212731..1213282	-	183	53718684	-	BPSL1043	-	putative lipoprotein
1046	 67.44	0	1213901..1215319	+	472	53718685	otsA	BPSL1044	-	alpha,alpha-trehalose-phosphate synthase
1047	 71.97	0	1215312..1215914	+	200	53718686	-	BPSL1045	-	hypothetical protein
1048	 70.75	0	1216087..1216698	-	203	53718687	-	BPSL1046	-	hypothetical protein
1049	 74.81	+1	1217068..1217325	+	85	53718688	-	BPSL1047	-	hypothetical protein
1050	 71.57	0	1217526..1218953	-	475	53718689	-	BPSL1048	-	putative sugar transport, integral membrane protein
1051	 66.28	0	1219023..1219535	-	170	53718690	-	BPSL1049	-	hypothetical protein
1052	 69.29	0	1220110..1220490	-	126	53718691	-	BPSL1050	-	hypothetical protein
1053	 72.44	+1	1221524..1221904	-	126	53718692	-	BPSL1053	-	putative lipoprotein
1054	 66.48	0	1222077..1222616	+	179	53718693	eco	BPSL1054	-	ecotin precursor
1055	 69.92	0	1222714..1223850	-	378	53718694	-	BPSL1055	-	murein-DD-endopeptidase
1056	 63.94	0	1224788..1225264	+	158	53718695	-	BPSL1057	-	hypothetical protein
1057	 63.86	0	1227014..1227298	+	94	53718696	-	BPSL1059	-	hypothetical protein
1058	 64.69	0	1227309..1227611	+	100	53718697	-	BPSL1060	-	hypothetical protein
1059	 63.93	0	1227608..1227826	+	72	53718698	-	BPSL1061	-	hypothetical protein
1060	 59.18	-1	1228340..1228606	+	88	53718699	infA	BPSL1062	-	translation initiation factor IF-1
1061	 67.54	0	1228626..1228970	+	114	53718700	-	BPSL1063	-	hypothetical protein
1062	 65.05	0	1229071..1229997	-	308	53718701	-	BPSL1064	-	putative dehydrogenase
1063	 66.10	0	1230018..1231604	-	528	53718702	-	BPSL1065	-	hypothetical protein
1064	 60.11	-1	1232050..1232232	-	60	53718703	rubA	BPSL1066	-	rubredoxin
1065	 65.35	0	1232690..1233145	+	151	53718704	-	BPSL1067	-	hypothetical protein
1066	 69.39	0	1233313..1235259	+	648	53718705	-	BPSL1068	-	putative ABC transport system, ATP-binding protein
1067	 66.82	0	1235465..1237447	+	660	53718706	parE	BPSL1069	-	DNA topoisomerase IV subunit B
1068	 68.95	0	1237506..1239824	+	772	53718707	parC	BPSL1070	-	DNA topoisomerase IV subunit A
1069	 68.19	0	1240517..1240975	+	152	53718708	-	BPSL1071	-	hypothetical protein
1070	 71.41	0	1241121..1242005	-	294	53718709	-	BPSL1072	-	LysR family transcriptional regulator
1071	 66.67	0	1242099..1242566	+	155	53718710	-	BPSL1073	-	hypothetical protein
1072	 66.67	0	1242775..1243737	-	320	53718711	-	BPSL1074	-	LysR family transcriptional regulator
1073	 70.40	0	1243953..1245266	+	437	53718712	-	BPSL1075	-	putative transport system, integral membrane protein
1074	 73.40	+1	1245268..1246530	+	420	53718713	-	BPSL1076	-	allantoate amidohydrolase
1075	 69.20	0	1246813..1247838	+	341	53718714	-	BPSL1078	-	putative aminohydrolase
1076	 71.36	0	1248218..1249411	-	397	53718715	-	BPSL1079	-	putative metal transport integral membrane protein
1077	 66.75	0	1249558..1251918	-	786	53718716	-	BPSL1080	-	hypothetical protein
1078	 75.67	+1	1252138..1253037	-	299	53718717	-	BPSL1081	-	putative phenazine biosynthesis-like protein
1079	 64.96	0	1253042..1253509	-	155	53718718	-	BPSL1082	-	hypothetical protein
1080	 69.08	0	1253565..1254767	-	400	53718719	-	BPSL1083	-	putative aminotransferase
1081	 73.60	+1	1254807..1255715	-	302	53718720	-	BPSL1084	-	hypothetical protein
1082	 73.98	+1	1255816..1256499	-	227	53718721	-	BPSL1085	-	hypothetical protein
1083	 69.80	0	1256635..1258104	+	489	53718722	-	BPSL1086	-	GntR family regulatory protein
67.43	MEAN

4.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.