IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.39   STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
869	 66.67	0	901087..902001	-	304	121597994	-	BMASAVP1_0891	-	LysR family transcriptional regulator
870	 62.88	-1	901992..902123	-	43	121597224	-	BMASAVP1_0892	-	hypothetical protein
871	 68.79	0	902269..903069	+	266	121596495	-	BMASAVP1_0893	-	hypothetical protein
872	 68.16	0	903059..903325	+	88	121597465	-	BMASAVP1_0894	-	hypothetical protein
873	 71.68	0	903322..904776	+	484	121597735	-	BMASAVP1_0895	-	acetyl-CoA carboxylase biotin carboxylase subunit
874	 65.18	0	904773..905648	+	291	121596466	-	BMASAVP1_0896	-	allophanate hydrolase, subunit 1
875	 72.34	0	905638..906642	+	334	121597018	-	BMASAVP1_0897	-	urea amidolyase-related protein
876	 66.74	0	906838..908184	+	448	121597518	-	BMASAVP1_0898	-	hypothetical protein
877	 69.46	0	908221..909723	+	500	121596815	-	BMASAVP1_0899	-	hypothetical protein
878	 66.92	0	910059..910451	+	130	121596544	-	BMASAVP1_0900	-	glyoxalase family protein
879	 67.36	0	910733..912028	+	431	121597510	-	BMASAVP1_0901	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
880	 65.38	0	913028..913804	-	258	121597314	-	BMASAVP1_0903	-	quinone family NAD(P)H dehydrogenase
881	 70.81	0	913900..914793	+	297	121598034	-	BMASAVP1_0904	-	LysR family transcriptional regulator
882	 65.33	0	914890..915114	-	74	121597319	-	BMASAVP1_0905	-	hypothetical protein
883	 66.30	0	915133..917049	+	638	121596833	-	BMASAVP1_0906	-	hypothetical protein
884	 64.91	0	917295..917408	-	37	121597205	-	BMASAVP1_0907	-	hypothetical protein
885	 65.09	0	917751..918131	-	126	121597541	-	BMASAVP1_0908	-	hypothetical protein
886	 67.88	0	918172..918831	-	219	121596792	-	BMASAVP1_0909	-	hypothetical protein
887	 67.31	0	919013..920095	-	360	121596974	-	BMASAVP1_0910	-	hypothetical protein
888	 69.77	0	920092..922569	-	825	121597894	-	BMASAVP1_0911	-	pentapeptide repeat-containing protein
889	 67.18	0	922601..924928	-	775	121596950	-	BMASAVP1_0912	-	Rhs element Vgr protein
890	 73.60	+1	925000..926037	-	345	121598007	-	BMASAVP1_0913	-	hypothetical protein
891	 71.27	0	926100..927185	-	361	121597221	-	BMASAVP1_0914	-	hypothetical protein
892	 69.31	0	927185..929074	-	629	121597998	-	BMASAVP1_0915	-	hypothetical protein
893	 68.73	0	929105..929686	-	193	121596609	-	BMASAVP1_0916	-	hypothetical protein
894	 75.16	+1	929673..930638	-	321	121597466	-	BMASAVP1_0917	-	hypothetical protein
895	 72.69	0	930635..931381	-	248	121597283	-	BMASAVP1_0918	-	hypothetical protein
896	 69.86	0	931887..932543	+	218	121597834	-	BMASAVP1_0919	-	chaperone, ATP-binding subunit
897	 72.30	0	932540..934810	+	756	121596510	-	BMASAVP1_0920	-	chaperone ClpB
898	 67.35	0	934846..935427	+	193	121597454	-	BMASAVP1_0921	-	hypothetical protein
899	 64.87	0	935462..936961	+	499	121597135	-	BMASAVP1_0922	-	hypothetical protein
900	 62.96	-1	937078..937563	+	161	121598142	-	BMASAVP1_0924	-	hypothetical protein
901	 78.63	+1	937541..937657	-	38	121598117	-	BMASAVP1_0923	-	hypothetical protein
902	 71.03	0	937670..938173	+	167	121597485	-	BMASAVP1_0925	-	hypothetical protein
903	 68.97	0	938195..939541	+	448	121596513	-	BMASAVP1_0926	-	hypothetical protein
904	 71.25	0	939630..940895	+	421	121597981	-	BMASAVP1_0927	-	hypothetical protein
905	 71.90	0	940924..943596	+	890	121597230	-	BMASAVP1_0928	-	SciS protein
906	 71.53	0	943704..944999	+	431	121597790	-	BMASAVP1_0929	-	SciS protein
907	 71.86	0	945019..945249	+	76	121597877	-	BMASAVP1_0930	-	hypothetical protein
908	 59.33	-1	945565..945714	-	49	121596897	-	BMASAVP1_0931	-	hypothetical protein
909	 67.25	0	945820..947181	+	453	121597488	-	BMASAVP1_0933	-	LysR family transcriptional regulator
910	 75.66	+1	945833..946099	-	88	121598132	-	BMASAVP1_0932	-	hypothetical protein
911	 70.77	0	947424..948350	-	308	121597713	-	BMASAVP1_0934	-	aromatic ring-opening dioxygenase
912	 72.19	0	948405..949400	-	331	121596603	-	BMASAVP1_0935	-	putative quinone oxidoreductase
913	 69.45	0	949405..951273	-	622	121597949	asnB	BMASAVP1_0936	-	asparagine synthase (glutamine-hydrolyzing)
914	 66.87	0	951319..952803	-	494	121597015	pvcC	BMASAVP1_0937	-	pyoverdin chromophore biosynthetic protein PvcC
915	 69.22	0	952829..953728	-	299	121596468	pvcB	BMASAVP1_0938	-	pyoverdine chromophore biosynthetic protein PvcB
916	 67.52	0	953725..954783	-	352	121597670	pvcA	BMASAVP1_0939	-	pyoverdine chromophore biosynthetic protein PvcA
917	 50.91	-2	955083..955247	-	54	121596955	-	BMASAVP1_0940	-	hypothetical protein
918	 68.69	0	955385..958345	-	986	121597960	-	BMASAVP1_0941	-	alpha-1,2-mannosidase family protein
919	 65.36	0	958557..960473	-	638	121597131	-	BMASAVP1_0942	-	hypothetical protein
920	 62.57	-1	960915..961280	-	121	121598091	-	BMASAVP1_0943	-	hypothetical protein
921	 58.33	-1	961304..961423	+	39	121596819	-	BMASAVP1_0945	-	hypothetical protein
922	 64.26	0	961420..961710	-	96	121597702	-	BMASAVP1_0944	-	hypothetical protein
923	 71.26	0	961703..962464	+	253	121596977	-	BMASAVP1_0946	-	short chain dehydrogenase
924	 70.74	0	963009..963941	+	310	121597037	-	BMASAVP1_0947	-	LysR family transcriptional regulator
925	 72.12	0	964094..965341	+	415	121596674	-	BMASAVP1_0948	-	putative D-amino acid dehydrogenase, small subunit
926	 63.55	0	965508..966404	+	298	121597649	-	BMASAVP1_0949	-	putative glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
927	 68.53	0	966451..967041	+	196	121596614	-	BMASAVP1_0951	-	hypothetical protein
928	 75.96	+1	967029..967469	-	146	121597437	-	BMASAVP1_0950	-	hypothetical protein
929	 67.52	0	967618..967734	-	38	121598006	-	BMASAVP1_0952	-	hypothetical protein
930	 75.61	+1	967782..967904	-	40	121597256	-	BMASAVP1_0953	-	hypothetical protein
931	 68.70	0	967961..969040	-	359	121597601	-	BMASAVP1_0954	-	fatty acid desaturase domain-containing protein
932	 69.86	0	969080..969298	+	72	121596854	-	BMASAVP1_0955	-	hypothetical protein
933	 74.19	+1	969295..970131	+	278	121597423	-	BMASAVP1_0956	-	hypothetical protein
934	 68.88	0	970473..971375	-	300	121596776	-	BMASAVP1_0957	-	LysR family transcriptional regulator
935	 69.27	0	971555..972745	+	396	121597575	hipO-2	BMASAVP1_0958	-	hippurate hydolase
936	 71.34	0	973328..974098	+	256	121596602	-	BMASAVP1_0959	-	major facilitator family protein
937	 67.46	0	974133..974762	+	209	121598011	-	BMASAVP1_0960	-	hypothetical protein
938	 68.88	0	974956..976353	+	465	121596589	dbpA	BMASAVP1_0961	-	ATP-dependent RNA helicase DbpA
939	 71.17	0	976350..977171	+	273	121597550	-	BMASAVP1_0962	-	hypothetical protein
940	 56.82	-2	977493..977756	+	87	121596806	-	BMASAVP1_0963	-	IS407A, transposase OrfA
941	 61.75	-1	977780..978613	+	277	121596985	-	BMASAVP1_0964	-	IS407A, transposase OrfB
942	 66.53	0	978658..979404	-	248	121597967	-	BMASAVP1_0965	-	hypothetical protein
943	 70.09	0	979521..980717	-	398	121597112	-	BMASAVP1_0966	-	caib/baif family protein
944	 70.53	0	980791..981540	-	249	121596643	-	BMASAVP1_0967	-	IclR family transcriptional regulator
945	 73.62	+1	981784..982689	+	301	121597020	-	BMASAVP1_0968	-	putative citrate lyase, beta subunit
946	 69.17	0	983005..984084	+	359	121598175	-	BMASAVP1_0969	-	putative outer membrane porin
947	 71.33	0	984126..985604	+	492	121597111	-	BMASAVP1_0970	-	MmgE/PrpD family protein
948	 70.74	0	985681..986808	-	375	121598087	-	BMASAVP1_0971	-	putative OpgC protein
949	 71.26	0	986805..986978	-	57	121596464	-	BMASAVP1_0972	-	hypothetical protein
950	 71.81	0	987208..988101	-	297	121597451	-	BMASAVP1_0973	-	rarD protein
951	 70.22	0	988098..988547	-	149	121596705	acyP	BMASAVP1_0974	-	acylphosphatase
952	 70.99	0	988546..989562	+	338	121597787	-	BMASAVP1_0976	-	dihydroflavonol-4-reductase family protein
953	 72.52	0	989550..989771	-	73	121597645	-	BMASAVP1_0975	-	hypothetical protein
954	 74.78	+1	989817..991271	+	484	121597760	-	BMASAVP1_0977	-	hypothetical protein
955	 72.66	0	991497..992681	-	394	121596597	-	BMASAVP1_0978	-	glycosyl transferase, group 2 family protein
956	 57.31	-2	992778..992948	+	56	121597220	-	BMASAVP1_0979	-	hypothetical protein
957	 67.62	0	993075..994016	+	313	121596456	ispH	BMASAVP1_0980	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
958	 63.39	0	994029..995189	+	386	121597095	-	BMASAVP1_0981	-	radical SAM domain-containing protein
959	 73.66	+1	995189..995431	+	80	121597911	-	BMASAVP1_0982	-	hypothetical protein
960	 65.82	0	995534..995887	+	117	121597723	-	BMASAVP1_0983	-	hypothetical protein
961	 71.51	0	995964..996314	+	116	121596973	-	BMASAVP1_0984	-	hypothetical protein
962	 70.36	0	996331..997794	+	487	121597499	-	BMASAVP1_0985	-	aminotransferase
963	 77.78	+1	998031..998129	+	32	121598102	-	BMASAVP1_0986	-	hypothetical protein
964	 57.89	-2	998599..998712	+	37	121597545	-	BMASAVP1_0987	-	hypothetical protein
965	 63.70	0	998737..1000218	-	493	121596536	-	BMASAVP1_0988	-	ISBma2, transposase
966	 69.46	0	1000321..1000929	-	202	121597800	-	BMASAVP1_0989	-	hypothetical protein
967	 73.93	+1	1001050..1001655	-	201	121596811	-	BMASAVP1_0990	-	hypothetical protein
968	 69.18	0	1001693..1002568	-	291	121597991	-	BMASAVP1_0991	-	short chain dehydrogenase/reductase family oxidoreductase
68.39	MEAN

5.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.