IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.39   STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.75	-1	6069..6902	-	277	121597123	-	BMASAVP1_0006	-	IS407A, transposase OrfB
2	 57.20	-2	6926..7189	-	87	121597921	-	BMASAVP1_0007	-	IS407A, transposase OrfA
3	 67.40	0	7599..7871	+	90	121596940	-	BMASAVP1_0008	-	hypothetical protein
4	 69.03	0	7984..9378	-	464	121597374	irlS	BMASAVP1_0009	-	sensor histidine kinase IrlS
5	 67.97	0	9375..10064	-	229	121596825	irlR	BMASAVP1_0010	-	transcriptional activator IrlR
6	 69.85	0	10071..13304	-	1077	121597208	czcA	BMASAVP1_0011	-	heavy metal efflux pump CzcA
7	 72.65	0	13350..14819	-	489	121596652	czcB	BMASAVP1_0012	-	heavy metal resistance protein CzcB
8	 74.39	+1	14830..16215	-	461	121597054	czcC	BMASAVP1_0013	-	heavy metal resistance protein CzcC
9	 73.33	0	16451..16735	-	94	121597828	-	BMASAVP1_0014	-	hypothetical protein
10	 63.46	0	17133..17288	-	51	121597031	-	BMASAVP1_0015	-	hypothetical protein
11	 65.50	0	17786..17956	+	56	121597683	-	BMASAVP1_0017	-	hypothetical protein
12	 64.83	0	17944..18432	-	162	121597772	-	BMASAVP1_0016	-	hypothetical protein
13	 62.96	-1	18759..19244	+	161	121596696	-	BMASAVP1_0018	-	YbaK/prolyl-tRNA synthetase associated domain-containing protein
14	 69.25	0	19512..20867	+	451	121596469	-	BMASAVP1_0019	-	basic amino acid/polyamine antiporter (APA) family protein
15	 77.91	+1	20922..21170	+	82	121597643	-	BMASAVP1_0020	-	hypothetical protein
16	 72.09	0	21167..21775	+	202	121597186	-	BMASAVP1_0021	-	S54 family peptidase
17	 81.48	+2	21783..21917	-	44	121597468	-	BMASAVP1_0022	-	hypothetical protein
18	 70.97	0	21914..24472	-	852	121597791	-	BMASAVP1_0023	-	ATP-dependent metalloprotease FtsH
19	 72.59	0	23968..24237	-	89	121597034	-	BMASAVP1_0024	-	hypothetical protein
20	 72.32	0	24633..24809	+	58	121596865	-	BMASAVP1_0025	-	hypothetical protein
21	 71.37	0	24823..25290	+	155	121597630	-	BMASAVP1_0026	-	hypothetical protein
22	 70.41	0	25287..26543	+	418	121597011	-	BMASAVP1_0027	-	N-acyl-D-aspartate/D-glutamate deacylase
23	 72.46	0	26540..27040	+	166	121597287	-	BMASAVP1_0029	-	hypothetical protein
24	 82.61	+2	27037..27174	-	45	121597845	-	BMASAVP1_0028	-	hypothetical protein
25	 70.24	0	27171..27842	-	223	121596580	-	BMASAVP1_0030	-	hypothetical protein
26	 72.68	0	27993..29090	+	365	121597336	-	BMASAVP1_0031	-	RND family efflux transporter MFP subunit
27	 68.54	0	29087..32188	+	1033	121596880	-	BMASAVP1_0032	-	hydrophobe/amphiphile efflux family protein
28	 71.47	0	32323..33861	+	512	121597060	oprB	BMASAVP1_0033	-	outer membrane efflux protein OprB
29	 56.57	-2	33876..34172	+	98	121597803	-	BMASAVP1_0034	-	hypothetical protein
30	 66.34	0	34218..34835	+	205	121597237	ribA	BMASAVP1_0035	-	GTP cyclohydrolase II
31	 70.20	0	34832..36529	+	565	121597978	toxC	BMASAVP1_0036	-	WD domain-containing protein
32	 72.69	0	36526..37206	+	226	121597658	-	BMASAVP1_0037	-	hypothetical protein
33	 67.84	0	37280..38977	-	565	121596450	-	BMASAVP1_0038	-	phage integrase family protein
34	 63.09	-1	39068..39514	-	148	121597511	-	BMASAVP1_0039	-	hypothetical protein
35	 60.42	-1	39683..39826	-	47	121597198	-	BMASAVP1_0040	-	hypothetical protein
36	 63.58	0	39885..40922	-	345	121598150	-	BMASAVP1_0041	-	hypothetical protein
37	 57.20	-2	41084..41347	+	87	121597000	-	BMASAVP1_0042	-	transposase subfamily protein
38	 61.63	-1	41371..42204	+	277	121596713	-	BMASAVP1_0043	-	A, transposase OrfB
39	 68.35	0	42465..44249	+	594	121597133	-	BMASAVP1_0044	-	penicillin-binding protein
40	 62.67	-1	44359..44658	-	99	121597876	-	BMASAVP1_0045	-	hypothetical protein
41	 69.56	0	44638..45639	+	333	121596892	-	BMASAVP1_0046	-	putative periplasmic sugar-binding protein
42	 71.06	0	45698..46471	+	257	121597533	-	BMASAVP1_0047	-	short chain dehydrogenase
43	 70.29	0	46506..48575	-	689	121597882	-	BMASAVP1_0048	-	putative potassium efflux system protein
44	 66.67	0	48218..48502	-	94	121597526	-	BMASAVP1_0049	-	hypothetical protein
45	 77.31	+1	48585..48800	-	71	121596797	-	BMASAVP1_0050	-	hypothetical protein
46	 47.86	-2	49013..49129	-	38	121597238	-	BMASAVP1_0051	-	hypothetical protein
47	 67.55	0	49476..50378	+	300	121597520	-	BMASAVP1_0052	-	hypothetical protein
48	 68.29	0	50479..52452	+	657	121597023	-	BMASAVP1_0053	-	hypothetical protein
49	 70.87	0	52466..52822	+	118	121596829	-	BMASAVP1_0054	-	hypothetical protein
50	 70.97	0	53059..53337	+	92	121596890	-	BMASAVP1_0055	-	hypothetical protein
51	 67.30	0	53495..53968	-	157	121597870	-	BMASAVP1_0056	-	3-demethylubiquinone-9 3-methyltransferase family protein
52	 67.85	0	54124..55134	-	336	121597128	-	BMASAVP1_0057	-	Mg2+/Co2+ transporter
53	 77.97	+1	55273..55449	+	58	121596869	-	BMASAVP1_0059	-	hypothetical protein
54	 71.88	0	55311..56441	+	376	121597931	-	BMASAVP1_0061	-	DeoR family transcriptional regulator
55	 66.08	0	55442..55612	-	56	121598096	-	BMASAVP1_0058	-	hypothetical protein
56	 62.88	-1	55626..55757	-	43	121597426	-	BMASAVP1_0060	-	hypothetical protein
57	 73.26	0	56475..57611	+	378	121597631	-	BMASAVP1_0062	-	putative transporter
58	 67.54	0	57641..57868	+	75	121598015	-	BMASAVP1_0063	-	hypothetical protein
59	 68.79	0	57999..58469	-	156	121597029	-	BMASAVP1_0064	-	hypothetical protein
60	 69.01	0	59246..60526	+	426	121598169	-	BMASAVP1_0065	-	putative sugar ABC transporter, periplasmic sugar-binding protein
61	 66.10	0	60704..61582	+	292	121597207	-	BMASAVP1_0066	-	putative sugar ABC transporter, permease protein
62	 68.63	0	61570..62382	+	270	121596714	-	BMASAVP1_0067	-	putative sugar ABC transporter, permease protein
63	 70.43	0	62404..63438	+	344	121596460	-	BMASAVP1_0068	-	zinc-binding dehydrogenase family oxidoreductase
64	 72.28	0	63442..64635	+	397	121597428	-	BMASAVP1_0069	-	putative sugar ABC transporter, ATP-binding protein
65	 67.97	0	64632..65630	+	332	121596626	-	BMASAVP1_0070	-	AraC family transcriptional regulator
66	 73.04	0	65627..67054	+	475	121598136	xylB-2	BMASAVP1_0071	-	xylulokinase
67	 70.56	0	67162..67341	-	59	121598081	-	BMASAVP1_0072	-	hypothetical protein
68	 64.65	0	67345..67542	+	65	121597004	-	BMASAVP1_0074	-	hypothetical protein
69	 55.56	-2	67496..67657	-	53	121596922	-	BMASAVP1_0073	-	hypothetical protein
70	 72.53	0	67671..69206	+	511	121597580	-	BMASAVP1_0075	-	D-alanyl-D-alanine carboxypeptidase family protein
71	 74.54	+1	69122..70519	+	465	121597293	-	BMASAVP1_0076	-	penicillin-binding protein
72	 64.29	0	70577..70702	-	41	121597788	-	BMASAVP1_0077	-	hypothetical protein
73	 79.49	+2	70719..70835	-	38	121596937	-	BMASAVP1_0078	-	hypothetical protein
74	 86.36	+2	70885..71016	-	43	121598109	-	BMASAVP1_0079	-	hypothetical protein
75	 72.00	0	71084..75340	-	1418	121597162	-	BMASAVP1_0080	-	putative nitrate reductase/sulfite reductase flavoprotein alpha-component
76	 69.23	0	75384..75734	-	116	121596556	nirD-2	BMASAVP1_0081	-	nitrite reductase [NAD(P)H], small subunit
77	 69.68	0	75772..78327	-	851	121597714	nirB-2	BMASAVP1_0082	-	nitrite reductase [NAD(P)H], large subunit
78	 71.04	0	78371..79696	-	441	121596540	-	BMASAVP1_0083	-	putative nitrate transporter
79	 81.29	+2	80310..80480	-	56	121597598	-	BMASAVP1_0084	-	hypothetical protein
80	 70.18	0	80589..80702	+	37	121596841	-	BMASAVP1_0085	-	hypothetical protein
81	 74.39	+1	80708..81523	+	271	121597402	cobA-2	BMASAVP1_0086	-	uroporphyrin-III C-methyltransferase
82	 70.85	0	81625..82221	+	198	121597504	-	BMASAVP1_0087	-	response regulator/ANTAR domain-containing protein
83	 72.69	0	82239..83300	+	353	121596538	-	BMASAVP1_0089	-	putative regulatory protein NasS
84	 75.19	+1	83255..83512	-	85	121597487	-	BMASAVP1_0088	-	hypothetical protein
85	 67.61	0	83570..84202	-	210	121597736	-	BMASAVP1_0090	-	GTP cyclohydrolase I
86	 63.70	0	84392..84694	+	100	121597908	-	BMASAVP1_0091	-	hypothetical protein
87	 73.64	+1	84883..85140	-	85	121598097	-	BMASAVP1_0092	-	hypothetical protein
88	 65.08	0	85155..85280	+	41	121597197	-	BMASAVP1_0093	-	hypothetical protein
89	 69.09	0	85333..85497	-	54	121597854	-	BMASAVP1_0094	-	hypothetical protein
90	 69.36	0	85767..87959	+	730	121596678	-	BMASAVP1_0095	-	putative lipoprotein
91	 70.48	0	88503..89525	-	340	121597399	-	BMASAVP1_0096	-	putative acetylpolyamine aminohydrolase
92	 73.99	+1	89556..90935	-	459	121596822	amaB-2	BMASAVP1_0097	-	allantoate amidohydrolase
93	 69.36	0	90960..92333	-	457	121596669	-	BMASAVP1_0098	-	major facilitator family transporter
94	 63.91	0	92580..93413	+	277	121597685	-	BMASAVP1_0099	-	LysR family transcriptional regulator
95	 71.87	0	93558..93980	-	140	121598159	-	BMASAVP1_0100	-	aspartate racemase
96	 72.25	0	93977..95032	-	351	121597226	-	BMASAVP1_0101	-	LysR family transcriptional regulator
97	 72.58	0	95156..95899	+	247	121597544	-	BMASAVP1_0103	-	short chain dehydrogenase/reductase family oxidoreductase
98	 80.00	+2	95859..96008	-	49	121596881	-	BMASAVP1_0102	-	hypothetical protein
99	 75.26	+1	96209..97627	-	472	121597187	-	BMASAVP1_0104	-	CAIB/BAIF family CoA transferase
100	 63.05	-1	97784..98032	+	82	121597729	-	BMASAVP1_0105	-	hypothetical protein
68.39	MEAN

5.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.