IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.39   STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
529	 67.09	0	546504..547685	-	393	121597540	ivd	BMASAVP1_0542	-	isovaleryl-CoA dehydrogenase
530	 71.37	0	547893..548657	+	254	121596772	-	BMASAVP1_0543	-	TetR family transcriptional regulator
531	 72.09	0	548695..548823	+	42	121598105	-	BMASAVP1_0545	-	hypothetical protein
532	 68.81	0	548777..549103	-	108	121596986	-	BMASAVP1_0544	-	hypothetical protein
533	 64.42	0	549589..551907	+	772	121597463	norB	BMASAVP1_0547	-	nitric oxide reductase
534	 76.02	+1	551864..552034	-	56	121597150	-	BMASAVP1_0546	-	hypothetical protein
535	 68.37	0	552048..553511	+	487	121596454	-	BMASAVP1_0548	-	mulitcopper oxidase domain-containing protein
536	 48.06	-2	553885..554013	-	42	121596446	-	BMASAVP1_0549	-	hypothetical protein
537	 68.91	0	553975..557316	+	1113	121597394	-	BMASAVP1_0550	-	Rieske family iron-sulfur cluster-binding protein /carboxynorspermidine decarboxylase
538	 69.23	0	557303..558667	+	454	121596552	-	BMASAVP1_0551	-	hypothetical protein
539	 64.90	0	558669..559460	+	263	121597134	-	BMASAVP1_0552	-	JmjC domain-containing protein
540	 75.82	+1	559464..560468	+	334	121598095	-	BMASAVP1_0553	-	hypothetical protein
541	 70.41	0	560609..561622	+	337	121597916	-	BMASAVP1_0554	-	hypothetical protein
542	 68.50	0	562074..563492	-	472	121596874	-	BMASAVP1_0555	-	major facilitator family transporter
543	 70.69	0	563595..564464	-	289	121598000	-	BMASAVP1_0556	-	acetyltransferase
544	 77.98	+1	564509..564994	-	161	121597033	-	BMASAVP1_0557	-	hypothetical protein
545	 74.96	+1	564991..566352	-	453	121596622	-	BMASAVP1_0558	-	sensor histidine kinase
546	 68.38	0	566355..567053	-	232	121597839	-	BMASAVP1_0559	-	DNA-binding response regulator
547	 72.75	0	567159..567602	+	147	121597427	-	BMASAVP1_0560	-	hypothetical protein
548	 72.96	0	567907..568065	+	52	121596667	-	BMASAVP1_0561	-	hypothetical protein
549	 69.44	0	568439..568906	+	155	121597586	-	BMASAVP1_0562	-	hypothetical protein
550	 74.40	+1	568928..569302	+	124	121596814	-	BMASAVP1_0563	-	sulfite reductase, alpha subunit
551	 72.99	0	569299..571260	+	653	121596802	-	BMASAVP1_0564	-	sulfite reductase, alpha subunit
552	 73.33	0	571241..572455	+	404	121596924	-	BMASAVP1_0565	-	ApbE family protein
553	 69.03	0	572470..574077	-	535	121597971	-	BMASAVP1_0566	-	piperideine-6-carboxylate dehydrogenase
554	 74.10	+1	574140..575255	-	371	121597108	-	BMASAVP1_0567	-	aminotransferase family protein
555	 73.00	0	575310..576257	-	315	121597306	-	BMASAVP1_0568	-	hypothetical protein
556	 61.90	-1	576252..576440	+	62	121597885	-	BMASAVP1_0569	-	hypothetical protein
557	 71.51	0	576504..577412	+	302	121596670	-	BMASAVP1_0570	-	LysR family transcriptional regulator
558	 71.73	0	577473..577946	+	157	121596993	-	BMASAVP1_0571	-	prevent-host-death family protein, putative
559	 72.96	0	578188..579489	+	433	121597951	-	BMASAVP1_0572	-	oxidoreductase, FAD-binding
560	 62.52	-1	579542..580240	+	232	121597204	-	BMASAVP1_0573	-	TetR family transcriptional regulator
561	 71.33	0	580318..580596	-	92	121597206	-	BMASAVP1_0574	-	hypothetical protein
562	 70.10	0	580707..582512	-	601	121598145	-	BMASAVP1_0575	-	hypothetical protein
563	 71.79	0	582529..582840	-	103	121596591	-	BMASAVP1_0576	-	hypothetical protein
564	 71.28	0	583227..583985	-	252	121597574	-	BMASAVP1_0577	-	DeoR family transcriptional regulator
565	 75.25	+1	584038..584643	-	201	121597588	-	BMASAVP1_0578	-	hypothetical protein
566	 69.50	0	584604..585944	-	446	121596927	-	BMASAVP1_0579	-	major facilitator family transporter
567	 77.90	+1	585977..586252	-	91	121597355	-	BMASAVP1_0580	-	hypothetical protein
568	 73.20	0	586272..587741	-	489	121596632	-	BMASAVP1_0581	-	mannitol dehydrogenase family protein
569	 70.11	0	587916..588641	+	241	121598023	-	BMASAVP1_0582	-	GntR family transcriptional regulator
570	 68.32	0	588663..589871	+	402	121597296	-	BMASAVP1_0583	-	starvation sensing protein RspA
571	 69.48	0	589920..590951	+	343	121597313	-	BMASAVP1_0584	-	putative dehydrogenase
572	 65.59	0	591905..592090	+	61	121597581	-	BMASAVP1_0586	-	hypothetical protein
573	 74.28	+1	592176..593081	+	301	121596804	-	BMASAVP1_0587	-	hypothetical protein
574	 70.06	0	593554..594408	+	284	121598037	nadE	BMASAVP1_0588	-	NAD synthetase
575	 73.29	0	594663..595688	-	341	121596708	-	BMASAVP1_0589	-	hypothetical protein
576	 69.95	0	595800..597017	+	405	121597424	-	BMASAVP1_0590	-	hypothetical protein
577	 67.73	0	597014..597862	+	282	121596584	-	BMASAVP1_0591	-	hypothetical protein
578	 66.67	0	597908..598348	+	146	121597634	-	BMASAVP1_0592	-	hypothetical protein
579	 68.97	0	598756..600318	+	520	121596873	-	BMASAVP1_0593	-	putative outer membrane nitrite reductase
580	 71.92	0	600343..601179	+	278	121597792	-	BMASAVP1_0594	-	hypothetical protein
581	 69.27	0	601176..601790	+	204	121597633	-	BMASAVP1_0595	-	SCO1/SenC family protein
582	 69.04	0	602052..602684	+	210	121598004	-	BMASAVP1_0596	-	hypothetical protein
583	 69.88	0	602829..603854	+	341	121597241	-	BMASAVP1_0597	-	N-acetylmuramoyl-L-alanine amidase domain-containing protein
584	 67.57	0	604142..605362	+	406	121597125	-	BMASAVP1_0598	-	hypothetical protein
585	 64.77	0	605940..606518	+	192	121596482	bimA	BMASAVP1_0599	-	intracellular motility protein A
586	 70.90	0	606598..606975	+	125	121598048	-	BMASAVP1_0600	-	putative lipoprotein
587	 71.58	0	607360..609252	-	630	121597840	-	BMASAVP1_0601	-	hypothetical protein
588	 66.40	0	609249..609986	-	245	121597699	virG	BMASAVP1_0602	-	DNA-binding response regulator
589	 72.95	0	609983..611827	-	614	121597055	-	BMASAVP1_0603	-	sensor histidine kinase
590	 65.25	0	612087..612581	+	164	121598065	-	BMASAVP1_0604	-	hypothetical protein
591	 63.98	0	612578..614104	+	508	121597456	-	BMASAVP1_0605	-	hypothetical protein
592	 56.86	-2	614324..614833	+	169	121596640	-	BMASAVP1_0606	-	hypothetical protein
593	 69.70	0	614826..615287	+	153	121598024	-	BMASAVP1_0607	-	hypothetical protein
594	 72.40	0	615324..617066	+	580	121597273	-	BMASAVP1_0608	-	hypothetical protein
595	 72.92	0	617054..618076	+	340	121597583	-	BMASAVP1_0609	-	hypothetical protein
596	 72.97	0	618063..621155	+	1030	121596593	-	BMASAVP1_0610	-	ATP-dependent Clp protease, ATP-binding subunit ClpB
597	 69.18	0	621182..624205	+	1007	121597345	-	BMASAVP1_0611	-	Rhs element Vgr protein
598	 75.52	+1	624231..626873	+	880	121596551	-	BMASAVP1_0612	-	pentapeptide repeat-containing protein
599	 72.77	0	626891..627955	+	354	121597558	-	BMASAVP1_0613	-	hypothetical protein
600	 78.09	+1	628075..628713	+	212	121596857	-	BMASAVP1_0614	-	hypothetical protein
601	 67.43	0	628742..629134	+	130	121597049	-	BMASAVP1_0615	-	hypothetical protein
602	 73.68	+1	629144..629941	+	265	121598014	-	BMASAVP1_0616	-	hypothetical protein
603	 71.48	0	629938..631371	+	477	121597385	-	BMASAVP1_0617	-	hypothetical protein
604	 72.52	0	631368..632033	+	221	121596665	-	BMASAVP1_0618	-	hypothetical protein
605	 74.24	+1	632045..636112	+	1355	121598086	-	BMASAVP1_0619	-	hypothetical protein
606	 57.41	-2	636109..636270	+	53	121597122	-	BMASAVP1_0620	-	hypothetical protein
607	 64.68	0	636274..636474	-	66	121597330	-	BMASAVP1_0621	-	hypothetical protein
608	 68.00	0	636629..638053	+	474	121596930	-	BMASAVP1_0623	-	hypothetical protein
609	 61.67	-1	638013..638192	-	59	121597887	-	BMASAVP1_0622	-	hypothetical protein
610	 55.83	-2	638271..638390	-	39	121597651	-	BMASAVP1_0624	-	hypothetical protein
611	 55.05	-2	638752..639147	+	131	121596646	-	BMASAVP1_0626	-	GTP cyclohydrolase I
612	 51.45	-2	639137..639274	-	45	121597387	-	BMASAVP1_0625	-	hypothetical protein
613	 62.15	-1	639297..639584	+	95	121597130	-	BMASAVP1_0627	-	integrase, catalytic region
614	 57.20	-2	639741..640004	+	87	121598178	-	BMASAVP1_0628	-	IS407A, transposase OrfA
615	 61.75	-1	640028..640861	+	277	121598001	-	BMASAVP1_0629	-	IS407A, transposase OrfB
616	 50.00	-2	643064..643177	+	37	121597421	-	BMASAVP1_0633	-	hypothetical protein
617	 63.06	-1	643164..643940	-	258	121597032	fadB1	BMASAVP1_0632	-	enoyl-CoA hydratase
618	 66.55	0	644071..645777	+	568	121596867	-	BMASAVP1_0634	-	aldehyde dehydrogenase family protein
619	 72.33	0	645851..647068	+	405	121597676	pcaF	BMASAVP1_0635	-	beta-ketoadipyl CoA thiolase
620	 66.29	0	647127..647918	+	263	121596481	-	BMASAVP1_0636	-	enoyl-CoA hydratase
621	 61.27	-1	648080..648394	+	104	121597087	-	BMASAVP1_0637	-	hypothetical protein
622	 65.82	0	648432..649730	+	432	121597625	paaF	BMASAVP1_0638	-	phenylacetate-CoA ligase
623	 67.90	0	650058..650462	-	134	121596894	-	BMASAVP1_0639	-	putative membrane-bound lytic murein transglycosylase A
624	 68.94	0	650502..651335	-	277	121598062	mltA	BMASAVP1_0640	-	membrane-bound lytic murein transglycosylase A
625	 64.27	0	651401..651775	-	124	121598110	apaG	BMASAVP1_0641	-	ApaG
626	 66.95	0	651957..652652	+	231	121597346	rpe	BMASAVP1_0642	-	ribulose-phosphate 3-epimerase
627	 66.80	0	652649..653377	+	242	121596760	gph-2	BMASAVP1_0643	-	phosphoglycolate phosphatase
628	 65.97	0	653665..655233	+	522	121597555	trpE	BMASAVP1_0644	-	anthranilate synthase component I
68.39	MEAN

5.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.