IslandPathversion 1.0

IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.39 STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1510	 71.87	0	1509186..1510319	+	377	121596779	oppF	BMASAVP1_1538	-	oligopeptide ABC transporter, ATP-binding protein OppF
1511	 65.78	0	1510477..1511937	+	486	121597615	-	BMASAVP1_1539	-	OprD family outer membrane porin
1512	 73.40	0	1511962..1512258	+	98	121597947	-	BMASAVP1_1540	-	hypothetical protein
1513	 70.59	0	1512269..1513261	-	330	121597952	-	BMASAVP1_1541	-	dedA family protein
1514	 61.24	-1	1513253..1513381	+	42	121596967	-	BMASAVP1_1542	-	hypothetical protein
1515	 65.93	0	1513416..1513688	-	90	121598045	-	BMASAVP1_1543	-	chromosome partitioning protein, ATP-binding subunit
1516	 64.84	0	1513658..1513876	-	72	121597253	-	BMASAVP1_1544	-	hypothetical protein
1517	 67.38	0	1514019..1515422	-	467	121596587	-	BMASAVP1_1545	-	hypothetical protein
1518	 75.15	+1	1515448..1515612	+	54	121597727	-	BMASAVP1_1546	-	hypothetical protein
1519	 69.27	0	1515709..1517247	+	512	121597047	-	BMASAVP1_1548	-	sigma-54 dependent DNA-binding transcriptional regulator
1520	 61.11	-1	1517211..1517678	-	155	121597780	-	BMASAVP1_1547	-	hypothetical protein
1521	 60.08	-1	1517599..1518099	+	166	121597042	-	BMASAVP1_1549	-	hypothetical protein
1522	 55.33	-2	1518305..1518454	+	49	121597973	-	BMASAVP1_1550	-	hypothetical protein
1523	 60.14	-1	1518557..1518847	+	96	121597229	-	BMASAVP1_1551	-	H-NS histone family protein
1524	 57.14	-2	1518900..1519130	+	76	121597554	-	BMASAVP1_1552	-	hypothetical protein
1525	 64.96	0	1519174..1520286	-	370	121596972	-	BMASAVP1_1553	-	hypothetical protein
1526	 70.23	0	1520341..1522752	+	803	121597730	-	BMASAVP1_1554	-	acetyltransferase
1527	 66.67	0	1522749..1522862	+	37	121598082	-	BMASAVP1_1555	-	hypothetical protein
1528	 63.57	0	1523028..1523156	-	42	121596885	-	BMASAVP1_1556	-	hypothetical protein
1529	 64.46	0	1523257..1523799	-	180	121597442	-	BMASAVP1_1557	-	hypothetical protein
1530	 68.89	0	1523863..1523997	-	44	121597127	-	BMASAVP1_1558	-	hypothetical protein
1531	 73.16	0	1523994..1525640	-	548	121597711	-	BMASAVP1_1559	-	indole acetimide hydrolase
1532	 68.93	0	1525688..1526614	-	308	121596506	-	BMASAVP1_1560	-	IclR family transcriptional regulator
1533	 80.70	+2	1526773..1526886	+	37	121596946	-	BMASAVP1_1561	-	hypothetical protein
1534	 70.67	0	1527023..1527871	+	282	121597299	-	BMASAVP1_1562	-	fumarylacetoacetate hydrolase family protein
1535	 68.68	0	1528055..1529197	-	380	121597553	lldD	BMASAVP1_1563	-	L-lactate dehydrogenase
1536	 74.89	+1	1529262..1530185	-	307	121597305	-	BMASAVP1_1564	-	LysR family transcriptional regulator
1537	 69.74	0	1530265..1530915	-	216	121598143	-	BMASAVP1_1565	-	hypothetical protein
1538	 67.79	0	1530897..1532231	-	444	121597012	-	BMASAVP1_1566	-	major facilitator family transporter
1539	 60.00	-1	1532738..1533082	+	114	121598003	-	BMASAVP1_1567	-	hypothetical protein
1540	 65.86	0	1533573..1534694	-	373	121596862	iscS-2	BMASAVP1_1568	-	cysteine desulfurase
1541	 65.94	0	1534741..1535982	-	413	121597940	-	BMASAVP1_1569	-	major facilitator family transporter
1542	 67.07	0	1535987..1536727	-	246	121596687	-	BMASAVP1_1570	-	metallo-beta-lactamase family protein
1543	 64.30	0	1536800..1537474	+	224	121597660	-	BMASAVP1_1571	-	ArsR family transcriptional regulator
1544	 59.33	-1	1537562..1537711	+	49	121597852	-	BMASAVP1_1572	-	hypothetical protein
1545	 59.41	-1	1537799..1538239	+	146	121596926	-	BMASAVP1_1573	-	hypothetical protein
1546	 70.30	0	1538342..1538506	+	54	121597146	-	BMASAVP1_1575	-	hypothetical protein
1547	 70.17	0	1538470..1539411	-	313	121597929	-	BMASAVP1_1574	-	LysR family transcriptional regulator
1548	 70.94	0	1539508..1539975	+	155	121598025	-	BMASAVP1_1576	-	D-serine ammonia-lyase
1549	 72.91	0	1539975..1540823	+	282	121596663	-	BMASAVP1_1577	-	D-serine dehydratase
1550	 72.68	0	1540994..1541908	-	304	121597725	-	BMASAVP1_1578	-	LysR family transcriptional regulator
1551	 66.67	0	1541837..1541950	+	37	121596494	-	BMASAVP1_1579	-	hypothetical protein
1552	 70.78	0	1542090..1542794	+	234	121596920	-	BMASAVP1_1580	-	short chain dehydrogenase/reductase family oxidoreductase
1553	 71.74	0	1542791..1543066	+	91	121596744	-	BMASAVP1_1581	-	protamine P1
1554	 70.83	0	1543316..1543483	-	55	121597312	-	BMASAVP1_1582	-	hypothetical protein
1555	 72.64	0	1543541..1543858	-	105	121598165	-	BMASAVP1_1583	-	hypothetical protein
1556	 71.43	0	1543838..1543963	+	41	121597201	-	BMASAVP1_1584	-	hypothetical protein
1557	 63.49	0	1544168..1545490	-	440	121597928	-	BMASAVP1_1585	-	hypothetical protein
1558	 75.81	+1	1545677..1545862	-	61	121597706	-	BMASAVP1_1586	-	hypothetical protein
1559	 71.96	0	1545890..1547779	+	629	121598122	-	BMASAVP1_1587	-	hypothetical protein
1560	 71.54	0	1547822..1549258	-	478	121597531	-	BMASAVP1_1588	-	FHA domain-containing protein
1561	 68.33	0	1549313..1549672	-	119	121596783	-	BMASAVP1_1589	-	putative lipoprotein
1562	 65.70	0	1550354..1550872	+	172	121597771	-	BMASAVP1_1590	-	putative lipoprotein
1563	 70.30	0	1550869..1552272	+	467	121596990	-	BMASAVP1_1591	-	hypothetical protein
1564	 72.82	0	1552288..1553604	+	438	121596826	-	BMASAVP1_1592	-	hypothetical protein
1565	 70.85	0	1553607..1557236	+	1209	121596568	-	BMASAVP1_1593	-	putative lipoprotein
1566	 73.52	0	1557233..1557757	+	174	121597602	-	BMASAVP1_1594	-	hypothetical protein
1567	 75.16	+1	1557754..1557906	+	50	121596790	-	BMASAVP1_1595	-	hypothetical protein
1568	 74.26	+1	1557912..1558148	+	78	121596709	-	BMASAVP1_1597	-	hypothetical protein
1569	 71.93	0	1558133..1558360	-	75	121597653	-	BMASAVP1_1596	-	hypothetical protein
1570	 74.12	+1	1558359..1560947	+	862	121598059	-	BMASAVP1_1598	-	serine/threonine protein kinase
1571	 73.33	0	1561000..1562079	+	359	121596921	-	BMASAVP1_1599	-	hypothetical protein
1572	 65.98	0	1562142..1562720	+	192	121596549	-	BMASAVP1_1600	-	hypothetical protein
1573	 65.87	0	1562713..1564221	+	502	121597320	-	BMASAVP1_1601	-	hypothetical protein
1574	 64.84	0	1564281..1564772	+	163	121596796	-	BMASAVP1_1602	-	hypothetical protein
1575	 73.26	0	1564791..1565351	+	186	121597728	-	BMASAVP1_1603	-	hypothetical protein
1576	 71.21	0	1565356..1567227	+	623	121598163	-	BMASAVP1_1604	-	hypothetical protein
1577	 72.55	0	1567224..1568702	+	492	121597169	-	BMASAVP1_1605	-	hypothetical protein
1578	 70.21	0	1568681..1571335	+	884	121596799	-	BMASAVP1_1606	-	putative ATP-dependent Clp protease, ATP-binding subunit ClpB
1579	 65.22	0	1571332..1573536	+	734	121597925	-	BMASAVP1_1607	-	Rhs element Vgr protein
1580	 65.14	0	1573611..1574264	+	217	121596656	-	BMASAVP1_1608	-	hypothetical protein
1581	 61.03	-1	1574206..1575252	+	348	121597339	-	BMASAVP1_1609	-	YD repeat-containing protein
1582	 61.75	-1	1575280..1576113	-	277	121597189	-	BMASAVP1_1610	-	IS407A, transposase OrfB
1583	 57.20	-2	1576137..1576400	-	87	121596662	-	BMASAVP1_1611	-	IS407A, transposase OrfA
1584	 68.50	0	1576696..1576968	+	90	121596995	-	BMASAVP1_1612	-	transposase, truncated
1585	 64.04	0	1576980..1578656	+	558	121596989	-	BMASAVP1_1613	-	HlyB family hemolysin activator protein
1586	 68.06	0	1578757..1581474	+	905	121597954	-	BMASAVP1_1614	-	hemagglutinin, homlog
1587	 64.64	0	1581721..1584438	-	905	121597255	acnA	BMASAVP1_1615	-	aconitate hydratase
1588	 68.46	0	1584486..1585994	-	502	121597188	prpD	BMASAVP1_1616	-	2-methylcitrate dehydratase
1589	 67.84	0	1586014..1586523	-	169	121598089	-	BMASAVP1_1617	-	hypothetical protein
1590	 73.53	0	1586680..1587699	-	339	121596462	-	BMASAVP1_1618	-	putative lyase
1591	 66.67	0	1587897..1588880	-	327	121597628	mdh	BMASAVP1_1619	-	malate dehydrogenase
1592	 67.92	0	1589179..1589979	+	266	121597044	-	BMASAVP1_1620	-	GntR family transcriptional regulator
1593	 58.27	-1	1590179..1590595	+	138	121597824	sdhC	BMASAVP1_1621	-	succinate dehydrogenase, cytochrome b556 subunit
1594	 61.52	-1	1590600..1590968	+	122	121597322	sdhD	BMASAVP1_1622	-	succinate dehydrogenase, hydrophobic membrane anchor protein
1595	 66.10	0	1590973..1592748	+	591	121597140	sdhA	BMASAVP1_1623	-	succinate dehydrogenase flavoprotein subunit
1596	 63.68	0	1592770..1593471	+	233	121597902	sdhB	BMASAVP1_1624	-	succinate dehydrogenase iron-sulfur subunit
1597	 63.74	0	1593473..1593745	+	90	121597056	-	BMASAVP1_1625	-	hypothetical protein
1598	 62.52	-1	1593798..1595099	+	433	121596919	gltA	BMASAVP1_1626	-	type II citrate synthase
1599	 73.64	+1	1595196..1596170	-	324	121597724	-	BMASAVP1_1627	-	AraC family transcriptional regulator
1600	 56.99	-2	1596204..1596389	+	61	121596737	-	BMASAVP1_1628	-	hypothetical protein
1601	 61.75	-1	1596400..1597233	-	277	121597500	-	BMASAVP1_1629	-	IS407A, transposase OrfB
1602	 57.20	-2	1597257..1597520	-	87	121597382	-	BMASAVP1_1630	-	IS407A, transposase OrfA
1603	 70.97	0	1597689..1597874	+	61	121596548	-	BMASAVP1_1631	-	hypothetical protein
1604	 75.00	+1	1598155..1598418	+	87	121597153	-	BMASAVP1_1632	-	hypothetical protein
1605	 71.57	0	1598732..1599976	+	414	121598114	-	BMASAVP1_1633	-	putative dioxygenase
1606	 70.37	0	1600228..1602951	-	907	121596676	-	BMASAVP1_1634	-	2-oxoacid dehydrogenase subunit E1
1607	 66.86	0	1603112..1603639	+	175	121597900	-	BMASAVP1_1635	-	bkd operon transcriptional regulator
1608	 53.19	-2	1603808..1603948	-	46	121597384	-	BMASAVP1_1636	-	hypothetical protein
1609	 68.15	0	1604123..1604257	+	44	121596703	-	BMASAVP1_1637	-	hypothetical protein
68.39	MEAN

5.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.