IslandPathversion 1.0

IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.39 STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1139	 67.11	0	1177790..1178467	+	225	121597396	-	BMASAVP1_1162	-	hypothetical protein
1140	 70.83	0	1178464..1178655	+	63	121597160	-	BMASAVP1_1163	-	hypothetical protein
1141	 65.71	0	1178662..1179285	+	207	121597901	-	BMASAVP1_1164	-	glutathione S-transferase
1142	 70.04	0	1179720..1180253	-	177	121597236	-	BMASAVP1_1165	-	hypothetical protein
1143	 65.86	0	1180264..1181502	-	412	121597008	-	BMASAVP1_1166	-	patatin family phospholipase
1144	 65.65	0	1181499..1182284	-	261	121597785	bdhA-1	BMASAVP1_1167	-	3-hydroxybutyrate dehydrogenase
1145	 62.10	-1	1182331..1183272	-	313	121597655	adc	BMASAVP1_1168	-	acetoacetate decarboxylase
1146	 70.91	0	1183491..1184126	+	211	121597976	-	BMASAVP1_1169	-	PAP2 family protein
1147	 66.24	0	1184149..1184385	-	78	121597441	-	BMASAVP1_1170	-	sperm-specific protein Phi-1
1148	 68.55	0	1184384..1184542	+	52	121596859	-	BMASAVP1_1171	-	hypothetical protein
1149	 73.33	0	1184708..1184827	+	39	121597675	-	BMASAVP1_1172	-	hypothetical protein
1150	 68.36	0	1185151..1185978	-	275	121597098	-	BMASAVP1_1173	-	siderophore-interacting protein
1151	 69.71	0	1186018..1186641	-	207	121597833	-	BMASAVP1_1174	-	PadR family transcriptional regulator
1152	 63.12	-1	1186606..1186746	+	46	121597946	-	BMASAVP1_1175	-	hypothetical protein
1153	 65.25	0	1187133..1188539	+	468	121596984	-	BMASAVP1_1176	-	cytochrome P450-related protein
1154	 57.50	-2	1188770..1188889	+	39	121597211	-	BMASAVP1_1177	-	hypothetical protein
1155	 64.55	0	1189063..1189914	+	283	121597731	-	BMASAVP1_1178	-	hypothetical protein
1156	 66.67	0	1189911..1190744	+	277	121596542	-	BMASAVP1_1179	-	hypothetical protein
1157	 66.72	0	1190741..1192684	+	647	121597537	-	BMASAVP1_1180	-	radical SAM domain/B12 binding domain-containing protein
1158	 68.79	0	1192698..1193687	+	329	121596601	-	BMASAVP1_1181	-	hypothetical protein
1159	 67.95	0	1193859..1194479	-	206	121596917	-	BMASAVP1_1182	-	LysE family protein
1160	 69.46	0	1194587..1195480	+	297	121596801	-	BMASAVP1_1183	-	chromosome replication initiation inhibitor protein
1161	 67.20	0	1195527..1196282	-	251	121596864	-	BMASAVP1_1184	-	Crp/FNR family transcriptional regulator
1162	 67.09	0	1196432..1196899	-	155	121597661	-	BMASAVP1_1185	-	universal stress protein
1163	 63.04	-1	1196965..1197102	-	45	121596471	-	BMASAVP1_1186	-	hypothetical protein
1164	 63.64	0	1197323..1197553	+	76	121597640	-	BMASAVP1_1187	-	hypothetical protein
1165	 73.15	0	1197686..1197901	+	71	121597501	-	BMASAVP1_1188	-	hypothetical protein
1166	 70.93	0	1197929..1199899	+	656	121596748	-	BMASAVP1_1189	-	aldehyde dehydrogenase (NADP) family protein
1167	 66.14	0	1199896..1200846	+	316	121598171	-	BMASAVP1_1190	-	putative gluconolactonase
1168	 69.28	0	1200903..1201592	-	229	121596498	-	BMASAVP1_1191	-	hypothetical protein
1169	 69.85	0	1201632..1202039	-	135	121597109	-	BMASAVP1_1192	-	hypothetical protein
1170	 59.92	-1	1202315..1202551	+	78	121598085	-	BMASAVP1_1193	-	hypothetical protein
1171	 66.67	0	1202675..1203598	+	307	121597616	-	BMASAVP1_1194	-	putative serine O-acetyltransferase
1172	 78.31	+1	1203619..1203867	+	82	121596793	-	BMASAVP1_1196	-	hypothetical protein
1173	 66.79	0	1203822..1204625	-	267	121596780	-	BMASAVP1_1195	-	short chain dehydrogenase/reductase family oxidoreductase
1174	 66.89	0	1204626..1205504	-	292	121597088	folE	BMASAVP1_1197	-	GTP cyclohydrolase I
1175	 68.29	0	1205492..1206415	-	307	121597859	-	BMASAVP1_1198	-	LysR family transcriptional regulator
1176	 68.52	0	1206514..1207755	+	413	121597331	pobA	BMASAVP1_1199	-	4-hydroxybenzoate 3-monooxygenase
1177	 66.31	0	1207828..1208676	+	282	121596994	pcaI	BMASAVP1_1200	-	3-oxoadipate CoA-transferase, alpha subunit
1178	 65.91	0	1208695..1209351	+	218	121597917	-	BMASAVP1_1201	-	3-oxoadipate CoA-succinyl transferase beta subunit
1179	 71.96	0	1209487..1210845	+	452	121596725	pcaB	BMASAVP1_1202	-	3-carboxy-cis,cis-muconate cycloisomerase
1180	 67.43	0	1210858..1211643	+	261	121597629	pcaD	BMASAVP1_1203	-	3-oxoadipate enol-lactonase
1181	 64.34	0	1211659..1212045	+	128	121597654	-	BMASAVP1_1204	-	3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase
1182	 69.17	0	1212224..1213579	+	451	121597765	pcaK	BMASAVP1_1205	-	4-hydroxybenzoate transporter
1183	 65.86	0	1213647..1213895	-	82	121596621	-	BMASAVP1_1206	-	hypothetical protein
1184	 63.59	0	1213996..1214613	-	205	121597565	-	BMASAVP1_1207	-	LysE family translocator protein
1185	 70.25	0	1214808..1216064	-	418	121597270	-	BMASAVP1_1208	-	major facilitator transporter
1186	 64.40	0	1216051..1216668	-	205	121597400	-	BMASAVP1_1209	-	hypothetical protein
1187	 74.31	+1	1216708..1216851	-	47	121598069	-	BMASAVP1_1210	-	hypothetical protein
1188	 67.20	0	1216881..1217444	-	187	121597286	-	BMASAVP1_1211	-	chromate transport protein
1189	 66.84	0	1217505..1218071	-	188	121596786	-	BMASAVP1_1212	-	chromate transport protein
1190	 68.81	0	1218068..1219045	-	325	121597086	-	BMASAVP1_1213	-	chromate resistance protein ChrB
1191	 69.95	0	1219264..1219689	-	141	121596816	-	BMASAVP1_1214	-	ABC transporter, permease protein
1192	 62.78	-1	1220011..1220550	+	179	121597755	-	BMASAVP1_1215	-	hypothetical protein
1193	 67.81	0	1220555..1220905	+	116	121597590	-	BMASAVP1_1216	-	hypothetical protein
1194	 66.81	0	1220914..1221609	+	231	121596846	-	BMASAVP1_1217	-	RNA polymerase sigma factor
1195	 70.25	0	1222086..1227998	+	1970	121597263	uvrA2	BMASAVP1_1218	-	excinuclease ABC, subunit A, form 2
1196	 57.84	-2	1228675..1228878	+	67	121596590	-	BMASAVP1_1219	-	hypothetical protein
1197	 61.30	-1	1229032..1229292	-	86	121598042	-	BMASAVP1_1220	-	hypothetical protein
1198	 62.59	-1	1229588..1229734	+	48	121596976	-	BMASAVP1_1221	-	hypothetical protein
1199	 62.19	-1	1229738..1229938	+	66	121596486	-	BMASAVP1_1222	-	hypothetical protein
1200	 58.61	-1	1229935..1230207	+	90	121597262	-	BMASAVP1_1223	-	hypothetical protein
1201	 53.03	-2	1230214..1230345	-	43	121597089	-	BMASAVP1_1224	-	hypothetical protein
1202	 61.33	-1	1230490..1230789	-	99	121597846	-	BMASAVP1_1225	-	H-NS histone family protein
1203	 56.61	-2	1230822..1231010	-	62	121597104	-	BMASAVP1_1226	-	hypothetical protein
1204	 64.56	0	1231339..1231623	+	94	121598036	-	BMASAVP1_1227	-	major facilitator family protein
1205	 62.83	-1	1231623..1232690	+	355	121597233	kgtP	BMASAVP1_1228	-	alpha-ketoglutarate permease
1206	 68.84	0	1232743..1233753	+	336	121597529	-	BMASAVP1_1229	-	C4-dicarboxylate transport sensor kinase
1207	 64.52	0	1233731..1234663	+	310	121596554	-	BMASAVP1_1230	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system
1208	 66.89	0	1234647..1235993	+	448	121597535	dctD-2	BMASAVP1_1231	-	C4-dicarboxylate transport transcriptional regulatory protein
1209	 42.67	-2	1237122..1237271	+	49	121596720	-	BMASAVP1_1232	-	hypothetical protein
1210	 69.25	0	1237454..1237801	-	115	121596537	-	BMASAVP1_1233	-	hypothetical protein
1211	 64.53	0	1238024..1238257	-	77	121597318	-	BMASAVP1_1234	-	hypothetical protein
1212	 68.22	0	1238261..1240186	+	641	121598061	-	BMASAVP1_1235	-	hypothetical protein
1213	 69.63	0	1240437..1240943	+	168	121596649	-	BMASAVP1_1236	-	AraC family transcriptional regulator
1214	 76.32	+1	1240977..1241090	-	37	121597432	-	BMASAVP1_1237	-	hypothetical protein
1215	 64.96	0	1241165..1241281	-	38	121596830	-	BMASAVP1_1238	-	hypothetical protein
1216	 67.49	0	1241315..1243510	+	731	121597244	plcN	BMASAVP1_1239	-	non-hemolytic phospholipase C precursor
1217	 64.74	0	1243734..1243889	-	51	121597812	-	BMASAVP1_1240	-	hypothetical protein
1218	 60.89	-1	1244002..1244694	+	230	121596617	-	BMASAVP1_1241	-	hypothetical protein
1219	 56.82	-2	1244594..1244857	+	87	121597613	-	BMASAVP1_1242	-	IS407A, transposase OrfA
1220	 61.75	-1	1244881..1245714	+	277	121596896	-	BMASAVP1_1243	-	IS407A, transposase OrfB
1221	 68.15	0	1246193..1248556	-	787	121597107	-	BMASAVP1_1245	-	putative exopolysaccharide tyrosine-protein kinase
1222	 62.50	-1	1248578..1248697	+	39	121597315	-	BMASAVP1_1247	-	hypothetical protein
1223	 69.45	0	1248681..1250009	-	442	121597805	-	BMASAVP1_1246	-	hypothetical protein
1224	 69.20	0	1250041..1251384	-	447	121598054	-	BMASAVP1_1248	-	hypothetical protein
1225	 67.29	0	1252195..1253478	-	427	121597413	-	BMASAVP1_1249	-	hypothetical protein
1226	 72.90	0	1253569..1254579	-	336	121596503	-	BMASAVP1_1250	-	putative lipoprotein
1227	 65.77	0	1254605..1255384	+	259	121597497	-	BMASAVP1_1251	-	hypothetical protein
1228	 66.67	0	1255650..1255808	+	52	121596755	-	BMASAVP1_1252	-	hypothetical protein
1229	 67.36	0	1256178..1258478	-	766	121596647	-	BMASAVP1_1253	-	serine protease, subtilase family protein
1230	 73.33	0	1258475..1258654	-	59	121597700	-	BMASAVP1_1254	-	hypothetical protein
1231	 51.11	-2	1258754..1258888	-	44	121597295	-	BMASAVP1_1255	-	hypothetical protein
1232	 68.22	0	1259048..1259497	-	149	121598029	-	BMASAVP1_1256	-	hypothetical protein
1233	 68.44	0	1259657..1261120	-	487	121597687	-	BMASAVP1_1257	-	diguanylate cyclase
1234	 70.68	0	1261478..1261726	-	82	121596512	-	BMASAVP1_1258	-	hypothetical protein
1235	 65.83	0	1261742..1261861	+	39	121597005	-	BMASAVP1_1259	-	hypothetical protein
1236	 68.60	0	1261923..1262906	-	327	121596716	-	BMASAVP1_1260	-	alpha/beta fold family hydrolase
1237	 68.54	0	1262903..1264501	-	532	121598063	-	BMASAVP1_1261	-	FAD-dependent oxidoreductase
1238	 70.74	0	1264498..1265406	-	302	121597269	-	BMASAVP1_1262	-	short chain dehydrogenase/reductase family oxidoreductase
68.39	MEAN

5.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.