IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.39   STD DEV: 5.20
Burkholderia mallei SAVP1 chromosome II, complete sequence - 1..1734922
1734 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
66	 73.04	0	65627..67054	+	475	121598136	xylB-2	BMASAVP1_0071	-	xylulokinase
67	 70.56	0	67162..67341	-	59	121598081	-	BMASAVP1_0072	-	hypothetical protein
68	 64.65	0	67345..67542	+	65	121597004	-	BMASAVP1_0074	-	hypothetical protein
69	 55.56	-2	67496..67657	-	53	121596922	-	BMASAVP1_0073	-	hypothetical protein
70	 72.53	0	67671..69206	+	511	121597580	-	BMASAVP1_0075	-	D-alanyl-D-alanine carboxypeptidase family protein
71	 74.54	+1	69122..70519	+	465	121597293	-	BMASAVP1_0076	-	penicillin-binding protein
72	 64.29	0	70577..70702	-	41	121597788	-	BMASAVP1_0077	-	hypothetical protein
73	 79.49	+2	70719..70835	-	38	121596937	-	BMASAVP1_0078	-	hypothetical protein
74	 86.36	+2	70885..71016	-	43	121598109	-	BMASAVP1_0079	-	hypothetical protein
75	 72.00	0	71084..75340	-	1418	121597162	-	BMASAVP1_0080	-	putative nitrate reductase/sulfite reductase flavoprotein alpha-component
76	 69.23	0	75384..75734	-	116	121596556	nirD-2	BMASAVP1_0081	-	nitrite reductase [NAD(P)H], small subunit
77	 69.68	0	75772..78327	-	851	121597714	nirB-2	BMASAVP1_0082	-	nitrite reductase [NAD(P)H], large subunit
78	 71.04	0	78371..79696	-	441	121596540	-	BMASAVP1_0083	-	putative nitrate transporter
79	 81.29	+2	80310..80480	-	56	121597598	-	BMASAVP1_0084	-	hypothetical protein
80	 70.18	0	80589..80702	+	37	121596841	-	BMASAVP1_0085	-	hypothetical protein
81	 74.39	+1	80708..81523	+	271	121597402	cobA-2	BMASAVP1_0086	-	uroporphyrin-III C-methyltransferase
82	 70.85	0	81625..82221	+	198	121597504	-	BMASAVP1_0087	-	response regulator/ANTAR domain-containing protein
83	 72.69	0	82239..83300	+	353	121596538	-	BMASAVP1_0089	-	putative regulatory protein NasS
84	 75.19	+1	83255..83512	-	85	121597487	-	BMASAVP1_0088	-	hypothetical protein
85	 67.61	0	83570..84202	-	210	121597736	-	BMASAVP1_0090	-	GTP cyclohydrolase I
86	 63.70	0	84392..84694	+	100	121597908	-	BMASAVP1_0091	-	hypothetical protein
87	 73.64	+1	84883..85140	-	85	121598097	-	BMASAVP1_0092	-	hypothetical protein
88	 65.08	0	85155..85280	+	41	121597197	-	BMASAVP1_0093	-	hypothetical protein
89	 69.09	0	85333..85497	-	54	121597854	-	BMASAVP1_0094	-	hypothetical protein
90	 69.36	0	85767..87959	+	730	121596678	-	BMASAVP1_0095	-	putative lipoprotein
91	 70.48	0	88503..89525	-	340	121597399	-	BMASAVP1_0096	-	putative acetylpolyamine aminohydrolase
92	 73.99	+1	89556..90935	-	459	121596822	amaB-2	BMASAVP1_0097	-	allantoate amidohydrolase
93	 69.36	0	90960..92333	-	457	121596669	-	BMASAVP1_0098	-	major facilitator family transporter
94	 63.91	0	92580..93413	+	277	121597685	-	BMASAVP1_0099	-	LysR family transcriptional regulator
95	 71.87	0	93558..93980	-	140	121598159	-	BMASAVP1_0100	-	aspartate racemase
96	 72.25	0	93977..95032	-	351	121597226	-	BMASAVP1_0101	-	LysR family transcriptional regulator
97	 72.58	0	95156..95899	+	247	121597544	-	BMASAVP1_0103	-	short chain dehydrogenase/reductase family oxidoreductase
98	 80.00	+2	95859..96008	-	49	121596881	-	BMASAVP1_0102	-	hypothetical protein
99	 75.26	+1	96209..97627	-	472	121597187	-	BMASAVP1_0104	-	CAIB/BAIF family CoA transferase
100	 63.05	-1	97784..98032	+	82	121597729	-	BMASAVP1_0105	-	hypothetical protein
101	 69.75	0	98631..99668	-	345	121596939	-	BMASAVP1_0106	-	oxidoreductase, zinc-binding dehydrogenase family protein
102	 70.98	0	99733..100890	-	385	121598141	-	BMASAVP1_0107	-	alcohol dehydrogenase, iron-containing
103	 69.38	0	100901..101269	-	122	121597407	-	BMASAVP1_0108	-	hypothetical protein
104	 68.52	0	101309..101470	-	53	121597962	-	BMASAVP1_0109	-	hypothetical protein
105	 68.47	0	101705..101926	+	73	121597228	-	BMASAVP1_0110	-	enzyme in methyl-directed mismatch repair, putative
106	 74.23	+1	101886..102242	+	118	121596765	-	BMASAVP1_0111	-	hypothetical protein
107	 69.48	0	102466..104529	+	687	121597930	-	BMASAVP1_0112	-	hypothetical protein
108	 70.27	0	104771..105103	-	110	121596449	-	BMASAVP1_0113	-	hypothetical protein
109	 72.63	0	105178..106149	+	323	121597961	-	BMASAVP1_0114	-	hypothetical protein
110	 69.68	0	106160..108976	+	938	121596596	-	BMASAVP1_0115	-	hypothetical protein
111	 68.52	0	108973..109620	+	215	121597371	-	BMASAVP1_0116	-	hypothetical protein
112	 72.24	0	109604..110392	+	262	121597539	-	BMASAVP1_0117	-	hypothetical protein
113	 72.95	0	110678..113893	-	1071	121596979	dhbF	BMASAVP1_0118	-	nonribosomal peptide synthetase DhbF
114	 72.87	0	113890..114018	-	42	121597356	-	BMASAVP1_0119	-	hypothetical protein
115	 69.08	0	113973..114179	-	68	121596817	-	BMASAVP1_0120	-	mbtH-like protein
116	 73.64	+1	114198..115487	-	429	121597161	-	BMASAVP1_0121	-	multidrug resistance protein
117	 65.05	0	115492..116418	-	308	121596598	-	BMASAVP1_0122	-	putative non-ribosomal peptide synthase
118	 64.07	0	116219..117682	+	487	121596988	-	BMASAVP1_0123	-	ISBma2, transposase
119	 57.20	-2	117924..118187	+	87	121597573	-	BMASAVP1_0124	-	IS407A, transposase OrfA
120	 61.75	-1	118211..119044	+	277	121596564	-	BMASAVP1_0125	-	IS407A, transposase OrfB
121	 70.94	0	119225..119341	-	38	121597222	-	BMASAVP1_0126	-	hypothetical protein
122	 71.08	0	119468..119716	+	82	121597957	-	BMASAVP1_0127	-	hypothetical protein
123	 71.59	0	121802..123061	+	419	121597753	-	BMASAVP1_0129	-	acyl-CoA dehydrogenase
124	 71.33	0	123163..123741	-	192	121597469	-	BMASAVP1_0130	-	hypothetical protein
125	 68.25	0	123798..124490	-	230	121596447	-	BMASAVP1_0131	-	isoprenylcysteine carboxyl methyltransferase
126	 57.02	-2	124493..124606	+	37	121597214	-	BMASAVP1_0132	-	hypothetical protein
127	 54.70	-2	124620..124736	-	38	121596679	-	BMASAVP1_0133	-	hypothetical protein
128	 63.61	0	124867..125160	-	97	121597606	-	BMASAVP1_0134	-	hypothetical protein
129	 70.30	0	125192..126208	+	338	121597781	-	BMASAVP1_0135	-	ABC periplasmic-binding sugar transport protein
130	 75.85	+1	126205..128022	+	605	121597767	-	BMASAVP1_0136	-	ribose transport ATP-binding protein RbsA
131	 74.21	+1	128743..129723	+	326	121598035	-	BMASAVP1_0138	-	carbohydrate ABC transporter permease
132	 70.79	0	129935..132700	-	921	121596654	-	BMASAVP1_0139	-	TonB-dependent siderophore receptor
133	 76.72	+1	132707..133651	-	314	121596575	-	BMASAVP1_0140	-	FecR family protein
134	 70.39	0	133706..134215	-	169	121597364	-	BMASAVP1_0141	-	ECF subfamily RNA polymerase sigma factor
135	 74.12	+1	134489..134716	-	75	121597884	-	BMASAVP1_0142	-	hypothetical protein
136	 70.83	0	134713..135072	-	119	121597697	-	BMASAVP1_0143	-	hypothetical protein
137	 75.08	+1	135112..136098	-	328	121596539	-	BMASAVP1_0144	-	hypothetical protein
138	 77.70	+1	136167..136991	-	274	121597493	-	BMASAVP1_0145	-	hypothetical protein
139	 70.11	0	136988..137509	-	173	121596472	-	BMASAVP1_0146	-	sigma-70 family RNA polymerase sigma factor
140	 75.69	+1	137525..137668	-	47	121597626	-	BMASAVP1_0147	-	putative lipoprotein
141	 72.42	0	137808..138311	-	167	121597154	-	BMASAVP1_0148	-	peptide chain release factor 1
142	 71.79	0	138354..139349	+	331	121597390	-	BMASAVP1_0149	-	AraC family transcriptional regulator
143	 70.62	0	139358..139534	+	58	121596914	-	BMASAVP1_0150	-	hypothetical protein
144	 72.06	0	139531..140235	+	234	121598032	-	BMASAVP1_0151	-	fumarylacetoacetate hydrolase family protein
145	 73.54	0	140447..141319	+	290	121597582	-	BMASAVP1_0152	-	CAAX protease family protein
146	 68.06	0	141666..142313	-	215	121598064	-	BMASAVP1_0153	-	hypothetical protein
147	 73.83	+1	142427..142873	-	148	121597472	-	BMASAVP1_0154	-	hypothetical protein
148	 71.18	0	143151..144236	+	361	121596511	-	BMASAVP1_0155	-	calcium/cation antiporter
149	 73.00	0	144350..144712	-	120	121596915	-	BMASAVP1_0156	-	prolyl-tRNA synthetase
150	 68.62	0	144758..145729	-	323	121598077	-	BMASAVP1_0157	-	LysR family transcriptional regulator
151	 64.77	0	145750..146013	+	87	121597718	-	BMASAVP1_0158	-	hypothetical protein
152	 74.12	+1	146082..147275	+	397	121596764	-	BMASAVP1_0159	-	HPP family/CBS domain-containing protein
153	 68.08	0	147404..147829	+	141	121596452	-	BMASAVP1_0160	-	MarR family transcriptional regulator
154	 71.65	0	147864..149768	+	634	121597663	-	BMASAVP1_0161	-	chloride channel (ClC) family protein
155	 74.47	+1	149909..150049	-	46	121597303	-	BMASAVP1_0162	-	hypothetical protein
156	 56.14	-2	150259..150372	-	37	121597142	-	BMASAVP1_0163	-	hypothetical protein
157	 71.54	0	150403..151839	-	478	121597869	-	BMASAVP1_0164	-	EmrB/QacA family drug resistance transporter
158	 66.79	0	151922..153580	-	552	121596951	prnC	BMASAVP1_0165	-	halogenase PrnC
159	 73.50	0	158299..169755	-	3818	121596690	-	BMASAVP1_0167	-	putative polyketide synthase PksJ
160	 73.98	+1	169964..172972	+	1002	121598100	-	BMASAVP1_0169	-	hypothetical protein
161	 73.36	0	172948..190416	-	5822	121597429	-	BMASAVP1_0168	-	putative polyketide synthase
162	 72.21	0	190406..198367	-	2653	121597168	-	BMASAVP1_0170	-	polyketide synthase
163	 74.62	+1	198573..203969	-	1798	121597786	-	BMASAVP1_0171	-	polyketide synthase
164	 48.15	-2	204017..204151	+	44	121596866	-	BMASAVP1_0172	-	hypothetical protein
165	 66.59	0	204571..205803	+	410	121596599	-	BMASAVP1_0173	-	monovalent cation:proton antiporter-2 (CPA2) family protein
68.39	MEAN

5.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.