IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
909	 62.96	0	1160737..1162005	+	422	115361226	-	Bamb_6485	-	putative oxidoreductase
910	 61.36	-1	1162103..1162969	+	288	115361227	-	Bamb_6486	-	polysaccharide deacetylase
911	 64.83	0	1163141..1165486	+	781	115361228	-	Bamb_6487	-	hypothetical protein
912	 62.53	0	1165552..1166880	+	442	115361229	-	Bamb_6488	-	O-antigen polymerase
913	 64.92	0	1166792..1168225	-	477	115361230	-	Bamb_6489	-	hypothetical protein
914	 63.37	0	1168209..1169453	-	414	115361231	-	Bamb_6490	-	glycosyl transferase, group 1
915	 63.90	0	1170120..1171202	+	360	115361232	-	Bamb_6491	-	undecaprenyl-phosphate galactose phosphotransferase
916	 63.11	0	1171267..1172475	+	402	115361233	-	Bamb_6492	-	glycosyl transferase, group 1
917	 64.28	0	1172477..1173856	+	459	115361234	-	Bamb_6493	-	virulence factor MVIN family protein
918	 66.73	0	1174083..1175627	+	514	115361235	-	Bamb_6494	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
919	 63.93	0	1175801..1176604	-	267	115361236	-	Bamb_6495	-	Crp/FNR family transcriptional regulator
920	 56.58	-2	1176687..1177172	+	161	115361237	-	Bamb_6496	-	hypothetical protein
921	 67.86	0	1177737..1177988	+	83	115361238	-	Bamb_6497	-	hypothetical protein
922	 58.06	-1	1178064..1179236	-	390	115361239	-	Bamb_6498	-	porin
923	 59.85	-1	1179311..1180660	-	449	115361240	-	Bamb_6499	-	major facilitator transporter
924	 63.62	0	1181416..1182300	+	294	115361241	-	Bamb_6500	-	AraC family transcriptional regulator
925	 63.09	0	1182621..1185335	+	904	115361242	-	Bamb_6501	-	2-oxoacid dehydrogenase subunit E1
926	 63.13	0	1185450..1186835	+	461	115361243	-	Bamb_6502	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
927	 64.98	0	1187117..1188895	+	592	115361244	-	Bamb_6503	-	dihydrolipoamide dehydrogenase
928	 58.63	-1	1189143..1189652	+	169	115361245	-	Bamb_6504	-	AsnC family transcriptional regulator
929	 62.49	0	1189675..1190823	+	382	115361246	-	Bamb_6505	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
930	 60.68	-1	1191024..1192661	+	545	115361247	-	Bamb_6506	-	AMP-dependent synthetase and ligase
931	 61.07	-1	1192699..1193520	-	273	115361248	-	Bamb_6507	-	AraC family transcriptional regulator
932	 60.20	-1	1193715..1194503	+	262	115361249	-	Bamb_6508	-	enoyl-CoA hydratase/isomerase
933	 61.67	-1	1194506..1195285	+	259	115361250	-	Bamb_6509	-	creatininase
934	 60.35	-1	1195576..1196730	+	384	115361251	-	Bamb_6510	-	luciferase family protein
935	 60.58	-1	1196739..1197527	+	262	115361252	-	Bamb_6511	-	enoyl-CoA hydratase/isomerase
936	 60.95	-1	1197524..1199431	+	635	115361253	-	Bamb_6512	-	AMP-dependent synthetase and ligase
937	 62.72	0	1199597..1200103	+	168	115361254	-	Bamb_6513	-	flavin reductase domain-containing protein
938	 63.43	0	1201727..1202932	+	401	115361255	-	Bamb_6514	-	alanine racemase
939	 60.57	-1	1203031..1203309	+	92	115361256	-	Bamb_6515	-	major facilitator family transporter
940	 62.44	0	1203408..1204898	+	496	115361257	-	Bamb_6516	-	integrase catalytic subunit
941	 64.84	0	1205128..1205730	+	200	115361258	-	Bamb_6517	-	transposase and inactivated derivatives
942	 52.56	-2	1205821..1206465	-	214	115361259	-	Bamb_6518	-	hypothetical protein
943	 62.94	0	1206692..1207924	+	410	115361260	-	Bamb_6519	-	hypothetical protein
944	 61.43	-1	1207925..1208497	-	190	115361261	-	Bamb_6520	-	hypothetical protein
945	 58.47	-1	1208519..1208896	-	125	115361262	-	Bamb_6521	-	hypothetical protein
946	 58.24	-1	1209274..1209546	+	90	115361263	-	Bamb_6522	-	transposase and inactivated derivatives
947	 61.26	-1	1209717..1210640	+	307	115361264	-	Bamb_6523	-	LysR family transcriptional regulator
948	 63.26	0	1210758..1212020	-	420	115361265	-	Bamb_6524	-	major facilitator transporter
949	 52.18	-2	1212343..1212777	+	144	115361266	-	Bamb_6525	-	hypothetical protein
950	 68.02	0	1213031..1214437	+	468	115361267	-	Bamb_6526	-	beta-lactamase domain-containing protein
951	 65.26	0	1214501..1215421	-	306	115361268	-	Bamb_6527	-	LysR family transcriptional regulator
952	 69.09	0	1215517..1216467	+	316	115361269	-	Bamb_6528	-	2-dehydropantoate 2-reductase
953	 68.70	0	1216464..1216856	+	130	115361270	-	Bamb_6529	-	glyoxalase/bleomycin resistance protein/dioxygenase
954	 67.76	0	1216859..1217317	+	152	115361271	-	Bamb_6530	-	dehydratase
955	 66.18	0	1217317..1218540	+	407	115361272	-	Bamb_6531	-	Formyl-CoA transferase
956	 69.90	0	1218537..1219370	+	277	115361273	-	Bamb_6532	-	shikimate 5-dehydrogenase
957	 68.69	0	1219418..1220305	-	295	115361274	-	Bamb_6533	-	binding-protein-dependent transport systems inner membrane component
958	 68.25	0	1220302..1221312	-	336	115361275	-	Bamb_6534	-	ABC transporter related
959	 67.80	0	1221377..1222432	-	351	115361276	-	Bamb_6535	-	ABC transporter substrate binding protein
960	 67.85	0	1222480..1223406	-	308	115361277	-	Bamb_6536	-	taurine dioxygenase
961	 70.12	0	1223747..1225975	+	742	115361278	-	Bamb_6537	-	histidine kinase
962	 68.78	0	1226032..1226742	-	236	115361279	-	Bamb_6538	-	MgtC/SapB transporter
963	 68.07	0	1227052..1227336	+	94	115361280	-	Bamb_6539	-	XRE family transcriptional regulator
964	 68.81	0	1227326..1228630	+	434	115361281	-	Bamb_6540	-	HipA domain-containing protein
965	 73.96	+1	1228703..1228798	-	31	115361282	-	Bamb_6541	-	oxidoreductase
966	 64.58	0	1228872..1230116	-	414	115361283	-	Bamb_6542	-	cobalamin synthesis protein, P47K
967	 66.06	0	1230113..1230766	-	217	115361284	-	Bamb_6543	-	nitrile hydratase
968	 65.33	0	1230811..1231410	-	199	115361285	-	Bamb_6544	-	nitrile hydratase, alpha subunit
969	 63.87	0	1231832..1232725	+	297	115361286	-	Bamb_6545	-	hypothetical protein
970	 64.77	0	1232824..1233876	+	350	115361287	-	Bamb_6546	-	putative phenylacetaldoxime dehydratase
971	 66.47	0	1233934..1235460	+	508	115361288	-	Bamb_6547	-	amidase
972	 63.31	0	1235592..1236635	+	347	115361289	-	Bamb_6548	-	AraC family transcriptional regulator
973	 61.50	-1	1236839..1237051	-	70	115361290	-	Bamb_6549	-	hypothetical protein
974	 64.94	0	1237048..1237509	-	153	115361291	-	Bamb_6550	-	hypothetical protein
975	 66.40	0	1237713..1238471	+	252	115361292	-	Bamb_6551	-	hypothetical protein
976	 57.53	-2	1238564..1238749	+	61	115361293	-	Bamb_6552	-	CopG/DNA-binding domain-containing protein
977	 66.07	0	1238783..1239619	-	278	115361294	-	Bamb_6553	-	spermidine synthase-like protein
978	 63.87	0	1239664..1240020	-	118	115361295	-	Bamb_6554	-	alkylphosphonate utilization operon protein PhnA
979	 70.30	0	1240296..1240625	+	109	115361296	-	Bamb_6555	-	phosphocarrier HPr protein
980	 67.57	0	1240691..1240912	+	73	115361297	-	Bamb_6556	-	hypothetical protein
981	 69.51	0	1241291..1241818	+	175	115361298	-	Bamb_6557	-	GCN5-related N-acetyltransferase
982	 73.25	+1	1241933..1243708	-	591	115361299	-	Bamb_6558	-	RND efflux system outer membrane lipoprotein
983	 67.91	0	1243711..1245315	-	534	115361300	-	Bamb_6559	-	EmrB/QacA family drug resistance transporter
984	 69.85	0	1245401..1246783	-	460	115361301	-	Bamb_6560	-	secretion protein HlyD family protein
985	 68.93	0	1247085..1247570	-	161	115361302	-	Bamb_6561	-	hypothetical protein
986	 71.84	+1	1247684..1248166	-	160	115361303	-	Bamb_6562	-	transport-associated
987	 69.64	0	1248385..1249125	-	246	115361304	-	Bamb_6563	-	hypothetical protein
988	 70.99	+1	1249333..1249725	-	130	115361305	-	Bamb_6564	-	hypothetical protein
989	 70.52	+1	1249784..1251364	-	526	115361306	-	Bamb_6565	-	glucose-methanol-choline oxidoreductase
990	 71.36	+1	1251444..1252103	-	219	115361307	-	Bamb_6566	-	hypothetical protein
991	 74.41	+1	1252100..1252951	-	283	115361308	-	Bamb_6567	-	hypothetical protein
992	 72.12	+1	1252995..1254095	-	366	115361309	-	Bamb_6568	-	mandelate racemase/muconate lactonizing protein
993	 69.18	0	1254260..1256086	+	608	115361310	-	Bamb_6569	-	pyruvate decarboxylase
994	 69.48	0	1256197..1257975	-	592	115361311	-	Bamb_6570	-	glycoside hydrolase 15-related
995	 72.97	+1	1257981..1258964	-	327	115361312	-	Bamb_6571	-	short chain dehydrogenase
996	 73.18	+1	1259248..1260306	+	352	115361313	-	Bamb_6572	-	cytochrome c, monohaem
997	 69.57	0	1260321..1262969	+	882	115361314	-	Bamb_6573	-	cytochrome c oxidase, subunit I
998	 72.39	+1	1262966..1263367	+	133	115361315	-	Bamb_6574	-	hypothetical protein
999	 73.63	+1	1263358..1265022	+	554	115361316	-	Bamb_6575	-	cytochrome c, class I
1000	 70.09	0	1265052..1266512	-	486	115361317	-	Bamb_6576	-	RND efflux system outer membrane lipoprotein
1001	 63.59	0	1266589..1267206	+	205	115361318	-	Bamb_6577	-	TetR family transcriptional regulator
1002	 72.25	+1	1267289..1268398	+	369	115361319	-	Bamb_6578	-	RND family efflux transporter MFP subunit
1003	 66.32	0	1268395..1271532	+	1045	115361320	-	Bamb_6579	-	acriflavin resistance protein
1004	 64.89	0	1271665..1272057	-	130	115361321	-	Bamb_6580	-	endoribonuclease L-PSP
1005	 71.17	+1	1272174..1272950	-	258	115361322	benD	Bamb_6581	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
1006	 67.35	0	1272947..1273972	-	341	115361323	-	Bamb_6582	-	oxidoreductase FAD/NAD(P)-binding subunit
1007	 62.78	0	1274011..1274499	-	162	115361324	-	Bamb_6583	-	2-chlorobenzoate 1,2-dioxygenase
1008	 64.53	0	1274496..1275854	-	452	115361325	-	Bamb_6584	-	Rieske (2Fe-2S) domain-containing protein
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.