IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
853	 55.60	-2	1057096..1057800	+	234	115361170	-	Bamb_6429	-	aspartate racemase
854	 59.63	-1	1058833..1059159	+	108	115361171	-	Bamb_6430	-	hypothetical protein
855	 62.63	0	1059503..1060246	-	247	115361172	-	Bamb_6431	-	short-chain dehydrogenase/reductase SDR
856	 59.18	-1	1060269..1060562	-	97	115361173	-	Bamb_6432	-	hypothetical protein
857	 60.40	-1	1060609..1061454	-	281	115361174	-	Bamb_6433	-	aminotransferase
858	 59.32	-1	1061600..1062565	+	321	115361175	-	Bamb_6434	-	LysR family transcriptional regulator
859	 62.33	0	1062824..1066330	-	1168	115361176	-	Bamb_6435	-	indolepyruvate ferredoxin oxidoreductase
860	 57.20	-2	1066480..1066944	+	154	115361177	-	Bamb_6436	-	AsnC family transcriptional regulator
861	 57.12	-2	1067193..1068449	-	418	115361178	-	Bamb_6437	-	hypothetical protein
862	 57.26	-2	1068508..1069857	-	449	115361179	-	Bamb_6438	-	glutathione-disulfide reductase
863	 57.97	-1	1069854..1070681	-	275	115361180	-	Bamb_6439	-	hypothetical protein
864	 60.57	-1	1070818..1071735	-	305	115361181	-	Bamb_6440	-	cysteine synthase A
865	 62.50	0	1071786..1072817	-	343	115361182	-	Bamb_6441	-	alcohol dehydrogenase
866	 62.68	0	1072977..1073729	-	250	115361183	-	Bamb_6442	-	short-chain dehydrogenase/reductase SDR
867	 62.43	0	1073770..1074996	-	408	115361184	-	Bamb_6443	-	OsmC family protein
868	 65.72	0	1075007..1076170	-	387	115361185	-	Bamb_6444	-	amine oxidase
869	 62.18	0	1076173..1076907	-	244	115361186	-	Bamb_6445	-	anti-ECFsigma factor, ChrR
870	 61.74	-1	1076919..1077263	-	114	115361187	-	Bamb_6446	-	alkylhydroperoxidase
871	 56.38	-2	1077324..1077605	-	93	115361188	-	Bamb_6447	-	hypothetical protein
872	 62.27	0	1077670..1078443	-	257	115361189	-	Bamb_6448	-	short-chain dehydrogenase/reductase SDR
873	 61.94	0	1078751..1079680	+	309	115361190	-	Bamb_6449	-	LysR family transcriptional regulator
874	 59.22	-1	1079753..1080370	-	205	115361191	-	Bamb_6450	-	TetR family transcriptional regulator
875	 56.31	-2	1080440..1081327	+	295	115361192	-	Bamb_6451	-	peptidase S15
876	 54.35	-2	1081345..1082172	+	275	115361193	-	Bamb_6452	-	short-chain dehydrogenase/reductase SDR
877	 50.64	-2	1082594..1083142	+	182	115361194	-	Bamb_6453	-	OsmC family protein
878	 59.50	-1	1083230..1084108	+	292	115361195	-	Bamb_6454	-	PhzF family phenazine biosynthesis protein
879	 64.97	0	1084358..1084888	+	176	115361196	-	Bamb_6455	-	GCN5-related N-acetyltransferase
880	 67.64	0	1084916..1085836	-	306	115361197	-	Bamb_6456	-	LysR family transcriptional regulator
881	 70.15	0	1085921..1087354	+	477	115361198	-	Bamb_6457	-	argininosuccinate lyase
882	 68.23	0	1087348..1088241	+	297	115361199	-	Bamb_6458	-	polar amino acid ABC transporter, inner membrane subunit
883	 69.01	0	1088274..1089041	+	255	115361200	-	Bamb_6459	-	ABC transporter related
884	 66.81	0	1089257..1089970	+	237	115361201	-	Bamb_6460	-	extracellular solute-binding protein
885	 70.56	+1	1089978..1090850	+	290	115361202	-	Bamb_6461	-	polysaccharide deacetylase
886	 69.64	0	1090847..1091755	+	302	115361203	-	Bamb_6462	-	polysaccharide deacetylase
887	 71.31	+1	1091752..1093128	+	458	115361204	-	Bamb_6463	-	MmgE/PrpD family protein
888	 69.77	0	1093581..1097960	+	1459	115361205	-	Bamb_6464	-	outer membrane autotransporter
889	 68.50	0	1098284..1100032	-	582	115361206	-	Bamb_6465	-	FAD linked oxidase domain-containing protein
890	 67.84	0	1101578..1102432	+	284	115361207	-	Bamb_6466	-	LuxR family transcriptional regulator
891	 72.67	+1	1102383..1102715	-	110	115361208	-	Bamb_6467	-	hypothetical protein
892	 69.47	0	1102700..1103590	-	296	115361209	-	Bamb_6468	-	LuxR family transcriptional regulator
893	 58.04	-1	1103736..1105439	-	567	115361210	-	Bamb_6469	-	cyclic peptide transporter
894	 58.43	-1	1105456..1105989	-	177	115361211	-	Bamb_6470	-	hypothetical protein
895	 61.19	-1	1105989..1106645	-	218	115361212	-	Bamb_6471	-	glycosyl transferase family protein
896	 67.77	0	1106642..1116172	-	3176	115361213	-	Bamb_6472	-	amino acid adenylation domain-containing protein
897	 68.51	0	1116260..1125316	-	3018	115361214	-	Bamb_6473	-	amino acid adenylation domain-containing protein
898	 68.25	0	1125367..1129281	-	1304	115361215	-	Bamb_6474	-	amino acid adenylation domain-containing protein
899	 62.77	0	1129269..1130885	-	538	115361216	-	Bamb_6475	-	beta-lactamase domain-containing protein
900	 68.98	0	1130896..1144332	-	4478	115361217	-	Bamb_6476	-	amino acid adenylation domain-containing protein
901	 68.68	0	1144329..1147652	-	1107	115361218	-	Bamb_6477	-	short-chain dehydrogenase/reductase SDR
902	 67.12	0	1147649..1152073	-	1474	115361219	-	Bamb_6478	-	beta-ketoacyl synthase
903	 62.26	0	1152264..1153262	-	332	115361220	-	Bamb_6479	-	taurine catabolism dioxygenase TauD/TfdA
904	 62.07	0	1153341..1154711	-	456	115361221	-	Bamb_6480	-	2,4-diaminobutyrate 4-transaminase
905	 62.39	0	1154845..1155873	-	342	115361222	-	Bamb_6481	-	NAD-dependent epimerase/dehydratase
906	 65.13	0	1155951..1156796	-	281	115361223	-	Bamb_6482	-	oleoyl-(acyl-carrier-protein) hydrolase
907	 65.89	0	1157846..1159126	+	426	115361224	-	Bamb_6483	-	polysaccharide export protein
908	 62.73	0	1159533..1160750	+	405	115361225	-	Bamb_6484	-	ATP-grasp enzyme-like protein
909	 62.96	0	1160737..1162005	+	422	115361226	-	Bamb_6485	-	putative oxidoreductase
910	 61.36	-1	1162103..1162969	+	288	115361227	-	Bamb_6486	-	polysaccharide deacetylase
911	 64.83	0	1163141..1165486	+	781	115361228	-	Bamb_6487	-	hypothetical protein
912	 62.53	0	1165552..1166880	+	442	115361229	-	Bamb_6488	-	O-antigen polymerase
913	 64.92	0	1166792..1168225	-	477	115361230	-	Bamb_6489	-	hypothetical protein
914	 63.37	0	1168209..1169453	-	414	115361231	-	Bamb_6490	-	glycosyl transferase, group 1
915	 63.90	0	1170120..1171202	+	360	115361232	-	Bamb_6491	-	undecaprenyl-phosphate galactose phosphotransferase
916	 63.11	0	1171267..1172475	+	402	115361233	-	Bamb_6492	-	glycosyl transferase, group 1
917	 64.28	0	1172477..1173856	+	459	115361234	-	Bamb_6493	-	virulence factor MVIN family protein
918	 66.73	0	1174083..1175627	+	514	115361235	-	Bamb_6494	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
919	 63.93	0	1175801..1176604	-	267	115361236	-	Bamb_6495	-	Crp/FNR family transcriptional regulator
920	 56.58	-2	1176687..1177172	+	161	115361237	-	Bamb_6496	-	hypothetical protein
921	 67.86	0	1177737..1177988	+	83	115361238	-	Bamb_6497	-	hypothetical protein
922	 58.06	-1	1178064..1179236	-	390	115361239	-	Bamb_6498	-	porin
923	 59.85	-1	1179311..1180660	-	449	115361240	-	Bamb_6499	-	major facilitator transporter
924	 63.62	0	1181416..1182300	+	294	115361241	-	Bamb_6500	-	AraC family transcriptional regulator
925	 63.09	0	1182621..1185335	+	904	115361242	-	Bamb_6501	-	2-oxoacid dehydrogenase subunit E1
926	 63.13	0	1185450..1186835	+	461	115361243	-	Bamb_6502	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
927	 64.98	0	1187117..1188895	+	592	115361244	-	Bamb_6503	-	dihydrolipoamide dehydrogenase
928	 58.63	-1	1189143..1189652	+	169	115361245	-	Bamb_6504	-	AsnC family transcriptional regulator
929	 62.49	0	1189675..1190823	+	382	115361246	-	Bamb_6505	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
930	 60.68	-1	1191024..1192661	+	545	115361247	-	Bamb_6506	-	AMP-dependent synthetase and ligase
931	 61.07	-1	1192699..1193520	-	273	115361248	-	Bamb_6507	-	AraC family transcriptional regulator
932	 60.20	-1	1193715..1194503	+	262	115361249	-	Bamb_6508	-	enoyl-CoA hydratase/isomerase
933	 61.67	-1	1194506..1195285	+	259	115361250	-	Bamb_6509	-	creatininase
934	 60.35	-1	1195576..1196730	+	384	115361251	-	Bamb_6510	-	luciferase family protein
935	 60.58	-1	1196739..1197527	+	262	115361252	-	Bamb_6511	-	enoyl-CoA hydratase/isomerase
936	 60.95	-1	1197524..1199431	+	635	115361253	-	Bamb_6512	-	AMP-dependent synthetase and ligase
937	 62.72	0	1199597..1200103	+	168	115361254	-	Bamb_6513	-	flavin reductase domain-containing protein
938	 63.43	0	1201727..1202932	+	401	115361255	-	Bamb_6514	-	alanine racemase
939	 60.57	-1	1203031..1203309	+	92	115361256	-	Bamb_6515	-	major facilitator family transporter
940	 62.44	0	1203408..1204898	+	496	115361257	-	Bamb_6516	-	integrase catalytic subunit
941	 64.84	0	1205128..1205730	+	200	115361258	-	Bamb_6517	-	transposase and inactivated derivatives
942	 52.56	-2	1205821..1206465	-	214	115361259	-	Bamb_6518	-	hypothetical protein
943	 62.94	0	1206692..1207924	+	410	115361260	-	Bamb_6519	-	hypothetical protein
944	 61.43	-1	1207925..1208497	-	190	115361261	-	Bamb_6520	-	hypothetical protein
945	 58.47	-1	1208519..1208896	-	125	115361262	-	Bamb_6521	-	hypothetical protein
946	 58.24	-1	1209274..1209546	+	90	115361263	-	Bamb_6522	-	transposase and inactivated derivatives
947	 61.26	-1	1209717..1210640	+	307	115361264	-	Bamb_6523	-	LysR family transcriptional regulator
948	 63.26	0	1210758..1212020	-	420	115361265	-	Bamb_6524	-	major facilitator transporter
949	 52.18	-2	1212343..1212777	+	144	115361266	-	Bamb_6525	-	hypothetical protein
950	 68.02	0	1213031..1214437	+	468	115361267	-	Bamb_6526	-	beta-lactamase domain-containing protein
951	 65.26	0	1214501..1215421	-	306	115361268	-	Bamb_6527	-	LysR family transcriptional regulator
952	 69.09	0	1215517..1216467	+	316	115361269	-	Bamb_6528	-	2-dehydropantoate 2-reductase
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.