IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
778	 66.04	0	962356..963939	+	527	115361095	-	Bamb_6354	-	extracellular solute-binding protein
779	 67.09	0	964019..964972	+	317	115361096	-	Bamb_6355	-	binding-protein-dependent transport systems inner membrane component
780	 70.52	+1	965078..965959	+	293	115361097	-	Bamb_6356	-	binding-protein-dependent transport systems inner membrane component
781	 70.03	0	965959..967833	+	624	115361098	-	Bamb_6357	-	ABC transporter related
782	 68.31	0	967974..969308	+	444	115361099	-	Bamb_6358	-	FAD dependent oxidoreductase
783	 70.18	0	969395..969850	+	151	115361100	-	Bamb_6359	-	AraC family transcriptional regulator
784	 67.89	0	969972..970706	+	244	115361101	-	Bamb_6360	-	protein of unknown function DUF861, cupin_3
785	 69.68	0	970709..972034	+	441	115361102	-	Bamb_6361	-	FAD dependent oxidoreductase
786	 67.65	0	972124..973449	+	441	115361103	-	Bamb_6362	-	FAD dependent oxidoreductase
787	 69.25	0	973446..974915	+	489	115361104	-	Bamb_6363	-	betaine-aldehyde dehydrogenase
788	 66.16	0	974947..976134	+	395	115361105	-	Bamb_6364	-	amidohydrolase
789	 64.78	0	976304..977206	+	300	115361106	-	Bamb_6365	-	GCN5-related N-acetyltransferase
790	 66.89	0	977238..979457	-	739	115361107	-	Bamb_6366	-	putative transmembrane protein
791	 67.81	0	980170..982359	+	729	115361108	-	Bamb_6367	-	TonB-dependent siderophore receptor
792	 65.93	0	982384..983199	-	271	115361109	-	Bamb_6368	-	two component AraC family transcriptional regulator
793	 67.61	0	984107..987721	+	1204	115361110	-	Bamb_6369	-	YadA domain-containing protein
794	 67.83	0	987837..989207	-	456	115361111	-	Bamb_6370	-	TolC family type I secretion outer membrane protein
795	 61.90	0	989388..1000598	-	3736	115361112	-	Bamb_6371	-	hypothetical protein
796	 67.02	0	1000688..1002112	-	474	115361113	-	Bamb_6372	-	HlyD family type I secretion membrane fusion protein
797	 69.49	0	1002096..1004291	-	731	115361114	-	Bamb_6373	-	ABC transporter related
798	 70.69	+1	1004887..1006128	-	413	115361115	-	Bamb_6374	-	citrate synthase
799	 69.47	0	1006189..1006581	-	130	115361116	-	Bamb_6375	-	glyoxalase/bleomycin resistance protein/dioxygenase
800	 66.20	0	1006642..1007928	-	428	115361117	-	Bamb_6376	-	major facilitator transporter
801	 68.77	0	1008025..1008783	-	252	115361118	-	Bamb_6377	-	short-chain dehydrogenase/reductase SDR
802	 68.33	0	1009098..1010060	+	320	115361119	-	Bamb_6378	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
803	 66.96	0	1010244..1010588	-	114	115361120	-	Bamb_6379	-	hypothetical protein
804	 63.22	0	1010683..1012803	+	706	115361121	-	Bamb_6380	-	putative outer membrane protein
805	 69.34	0	1012838..1014070	+	410	115361122	-	Bamb_6381	-	hypothetical protein
806	 62.67	0	1014606..1014905	+	99	115361123	-	Bamb_6382	-	histone family protein nucleoid-structuring protein H-NS
807	 60.73	-1	1014919..1015137	+	72	115361124	-	Bamb_6383	-	hypothetical protein
808	 62.28	0	1015426..1015881	-	151	115361125	-	Bamb_6384	-	alkylhydroperoxidase
809	 64.75	0	1015907..1016323	-	138	115361126	-	Bamb_6385	-	cupin 2 domain-containing protein
810	 68.72	0	1016443..1017855	-	470	115361127	-	Bamb_6386	-	GntR family transcriptional regulator
811	 61.49	-1	1018003..1018659	+	218	115361128	-	Bamb_6387	-	metal-dependent phosphohydrolase
812	 63.49	0	1018973..1019413	+	146	115361129	-	Bamb_6388	-	heat shock protein Hsp20
813	 64.95	0	1019429..1019836	+	135	115361130	-	Bamb_6389	-	heat shock protein Hsp20
814	 63.48	0	1019932..1020495	+	187	115361131	-	Bamb_6390	-	heat shock protein Hsp20
815	 59.61	-1	1020532..1020786	-	84	115361132	-	Bamb_6391	-	hypothetical protein
816	 64.94	0	1020892..1022514	-	540	115361133	groEL	Bamb_6392	-	chaperonin GroEL
817	 64.15	0	1022592..1022909	-	105	115361134	-	Bamb_6393	-	chaperonin Cpn10
818	 68.70	0	1023081..1023719	-	212	115361135	-	Bamb_6394	-	hypothetical protein
819	 63.71	0	1024343..1024579	+	78	115361136	-	Bamb_6395	-	hypothetical protein
820	 63.94	0	1024596..1025072	-	158	115361137	-	Bamb_6396	-	hypothetical protein
821	 57.92	-1	1025182..1025421	+	79	115361138	-	Bamb_6397	-	hypothetical protein
822	 60.19	-1	1025598..1025813	+	71	115361139	-	Bamb_6398	-	hypothetical protein
823	 58.65	-1	1025863..1026174	-	103	115361140	-	Bamb_6399	-	hypothetical protein
824	 52.74	-2	1026244..1026480	-	78	115361141	-	Bamb_6400	-	hypothetical protein
825	 59.37	-1	1027042..1027356	-	104	115361142	-	Bamb_6401	-	hypothetical protein
826	 53.83	-2	1027522..1027887	-	121	115361143	-	Bamb_6402	-	HxlR family transcriptional regulator
827	 59.94	-1	1027979..1028305	+	108	115361144	-	Bamb_6403	-	hypothetical protein
828	 62.05	0	1028305..1029084	+	259	115361145	-	Bamb_6404	-	short chain dehydrogenase
829	 66.94	0	1029134..1030609	-	491	115361146	-	Bamb_6405	-	amidase
830	 69.59	0	1030625..1031854	-	409	115361147	-	Bamb_6406	-	major facilitator transporter
831	 65.50	0	1031877..1032815	-	312	115361148	-	Bamb_6407	-	hypothetical protein
832	 67.35	0	1032894..1033919	-	341	115361149	-	Bamb_6408	-	AraC family transcriptional regulator
833	 57.53	-1	1034210..1034986	-	258	115361150	-	Bamb_6409	-	AraC family transcriptional regulator
834	 58.93	-1	1035328..1036452	+	374	115361151	-	Bamb_6410	-	branched-chain amino acid aminotransferase
835	 59.78	-1	1036693..1038174	+	493	115361152	-	Bamb_6411	-	aldehyde dehydrogenase
836	 55.68	-2	1038378..1038914	+	178	115361153	-	Bamb_6412	-	hypothetical protein
837	 59.47	-1	1038928..1039497	+	189	115361154	-	Bamb_6413	-	thiamine pyrophosphate binding domain-containing protein
838	 58.25	-1	1039661..1041370	+	569	115361155	-	Bamb_6414	-	glucose-methanol-choline oxidoreductase
839	 58.76	-1	1041318..1042202	-	294	115361156	-	Bamb_6415	-	HpcH/HpaI aldolase
840	 57.55	-1	1042222..1042638	-	138	115361157	-	Bamb_6416	-	hypothetical protein
841	 59.90	-1	1042660..1043916	-	418	115361158	-	Bamb_6417	-	Formyl-CoA transferase
842	 59.25	-1	1044040..1044942	+	300	115361159	-	Bamb_6418	-	LysR family transcriptional regulator
843	 66.22	0	1045075..1045968	-	297	115361160	-	Bamb_6419	-	LysR family transcriptional regulator
844	 64.06	0	1046210..1047361	+	383	115361161	-	Bamb_6420	-	major facilitator transporter
845	 66.22	0	1047367..1048263	+	298	115361162	-	Bamb_6421	-	2-dehydropantoate 2-reductase
846	 57.78	-1	1048581..1050245	+	554	115361163	-	Bamb_6422	-	major facilitator transporter
847	 56.88	-2	1050385..1051089	+	234	115361164	-	Bamb_6423	-	haloacid dehalogenase, type II
848	 58.20	-1	1051292..1052236	-	314	115361165	-	Bamb_6424	-	LysR family transcriptional regulator
849	 59.58	-1	1052569..1053795	+	408	115361166	-	Bamb_6425	-	diaminopropionate ammonia-lyase
850	 58.44	-1	1054032..1054493	+	153	115361167	-	Bamb_6426	-	endoribonuclease L-PSP
851	 55.45	-2	1054611..1055930	+	439	115361168	-	Bamb_6427	-	sodium:dicarboxylate symporter
852	 56.51	-2	1056029..1056934	+	301	115361169	-	Bamb_6428	-	LysR family transcriptional regulator
853	 55.60	-2	1057096..1057800	+	234	115361170	-	Bamb_6429	-	aspartate racemase
854	 59.63	-1	1058833..1059159	+	108	115361171	-	Bamb_6430	-	hypothetical protein
855	 62.63	0	1059503..1060246	-	247	115361172	-	Bamb_6431	-	short-chain dehydrogenase/reductase SDR
856	 59.18	-1	1060269..1060562	-	97	115361173	-	Bamb_6432	-	hypothetical protein
857	 60.40	-1	1060609..1061454	-	281	115361174	-	Bamb_6433	-	aminotransferase
858	 59.32	-1	1061600..1062565	+	321	115361175	-	Bamb_6434	-	LysR family transcriptional regulator
859	 62.33	0	1062824..1066330	-	1168	115361176	-	Bamb_6435	-	indolepyruvate ferredoxin oxidoreductase
860	 57.20	-2	1066480..1066944	+	154	115361177	-	Bamb_6436	-	AsnC family transcriptional regulator
861	 57.12	-2	1067193..1068449	-	418	115361178	-	Bamb_6437	-	hypothetical protein
862	 57.26	-2	1068508..1069857	-	449	115361179	-	Bamb_6438	-	glutathione-disulfide reductase
863	 57.97	-1	1069854..1070681	-	275	115361180	-	Bamb_6439	-	hypothetical protein
864	 60.57	-1	1070818..1071735	-	305	115361181	-	Bamb_6440	-	cysteine synthase A
865	 62.50	0	1071786..1072817	-	343	115361182	-	Bamb_6441	-	alcohol dehydrogenase
866	 62.68	0	1072977..1073729	-	250	115361183	-	Bamb_6442	-	short-chain dehydrogenase/reductase SDR
867	 62.43	0	1073770..1074996	-	408	115361184	-	Bamb_6443	-	OsmC family protein
868	 65.72	0	1075007..1076170	-	387	115361185	-	Bamb_6444	-	amine oxidase
869	 62.18	0	1076173..1076907	-	244	115361186	-	Bamb_6445	-	anti-ECFsigma factor, ChrR
870	 61.74	-1	1076919..1077263	-	114	115361187	-	Bamb_6446	-	alkylhydroperoxidase
871	 56.38	-2	1077324..1077605	-	93	115361188	-	Bamb_6447	-	hypothetical protein
872	 62.27	0	1077670..1078443	-	257	115361189	-	Bamb_6448	-	short-chain dehydrogenase/reductase SDR
873	 61.94	0	1078751..1079680	+	309	115361190	-	Bamb_6449	-	LysR family transcriptional regulator
874	 59.22	-1	1079753..1080370	-	205	115361191	-	Bamb_6450	-	TetR family transcriptional regulator
875	 56.31	-2	1080440..1081327	+	295	115361192	-	Bamb_6451	-	peptidase S15
876	 54.35	-2	1081345..1082172	+	275	115361193	-	Bamb_6452	-	short-chain dehydrogenase/reductase SDR
877	 50.64	-2	1082594..1083142	+	182	115361194	-	Bamb_6453	-	OsmC family protein
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.