IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 67.68	0	888873..889169	+	98	115361034	-	Bamb_6293	-	hypothetical protein
718	 67.06	0	889195..890466	+	423	115361035	-	Bamb_6294	-	hypothetical protein
719	 65.54	0	890480..891013	+	177	115361036	-	Bamb_6295	-	TadE family protein
720	 62.84	0	891010..891453	+	147	115361037	-	Bamb_6296	-	TadE family protein
721	 68.98	0	891474..892682	+	402	115361038	-	Bamb_6297	-	response regulator receiver protein
722	 65.72	0	892702..894069	+	455	115361039	-	Bamb_6298	-	type II secretion system protein E
723	 65.44	0	894103..895080	+	325	115361040	-	Bamb_6299	-	type II secretion system protein
724	 65.74	0	895119..896090	+	323	115361041	-	Bamb_6300	-	type II secretion system protein
725	 68.72	0	896820..899549	+	909	115361042	-	Bamb_6301	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
726	 66.67	0	899546..900064	+	172	115361043	-	Bamb_6302	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
727	 67.37	0	900061..901062	+	333	115361044	-	Bamb_6303	-	hypothetical protein
728	 67.14	0	901091..902353	-	420	115361045	-	Bamb_6304	-	Serine-type D-Ala-D-Ala carboxypeptidase
729	 66.35	0	902498..903457	-	319	115361046	-	Bamb_6305	-	protein involved in MetA-pathway of phenol degradation-like protein
730	 66.86	0	903491..904018	-	175	115361047	-	Bamb_6306	-	flavin reductase domain-containing protein
731	 67.55	0	904024..905262	-	412	115361048	-	Bamb_6307	-	hypothetical protein
732	 69.20	0	905326..906114	-	262	115361049	-	Bamb_6308	-	short chain dehydrogenase
733	 68.62	0	906194..907423	-	409	115361050	-	Bamb_6309	-	carboxymethylenebutenolidase
734	 67.45	0	907776..908801	+	341	115361051	-	Bamb_6310	-	AraC family transcriptional regulator
735	 66.04	0	909014..910123	-	369	115361052	-	Bamb_6311	-	alcohol dehydrogenase
736	 66.30	0	910180..910455	-	91	115361053	-	Bamb_6312	-	regulator protein FrmR
737	 63.82	0	910808..912001	+	397	115361054	-	Bamb_6313	-	major facilitator transporter
738	 63.32	0	912054..913187	+	377	115361055	-	Bamb_6314	-	porin
739	 68.81	0	913395..914843	-	482	115361056	-	Bamb_6315	-	amidase
740	 65.92	0	915416..916897	+	493	115361057	-	Bamb_6316	-	GntR family transcriptional regulator
741	 59.62	-1	917089..917556	+	155	115361058	-	Bamb_6317	-	antibiotic biosynthesis monooxygenase
742	 69.16	0	917660..918622	-	320	115361059	-	Bamb_6318	-	LysR family transcriptional regulator
743	 69.79	0	918825..919946	+	373	115361060	-	Bamb_6319	-	amidohydrolase
744	 66.67	0	920000..920794	+	264	115361061	-	Bamb_6320	-	extracellular solute-binding protein
745	 65.99	0	920850..922034	+	394	115361062	-	Bamb_6321	-	porin
746	 69.53	0	924056..925069	-	337	115361063	-	Bamb_6322	-	LacI family transcription regulator
747	 69.18	0	925303..926457	+	384	115361064	-	Bamb_6323	-	ABC transporter related
748	 65.62	0	926521..927759	+	412	115361065	-	Bamb_6324	-	extracellular solute-binding protein
749	 65.47	0	927833..928750	+	305	115361066	-	Bamb_6325	-	binding-protein-dependent transport systems inner membrane component
750	 67.25	0	928762..929613	+	283	115361067	-	Bamb_6326	-	binding-protein-dependent transport systems inner membrane component
751	 69.96	0	929652..931622	+	656	115361068	-	Bamb_6327	-	Beta-galactosidase
752	 71.68	+1	931627..932922	+	431	115361069	-	Bamb_6328	-	major facilitator transporter
753	 67.70	0	932981..934141	-	386	115361070	-	Bamb_6329	-	arabinogalactan endo-1,4-beta-galactosidase
754	 69.33	0	934309..935397	-	362	115361071	-	Bamb_6330	-	aldose 1-epimerase
755	 68.51	0	935425..936618	-	397	115361072	-	Bamb_6331	-	AraC family transcriptional regulator
756	 66.82	0	936884..938206	+	440	115361073	-	Bamb_6332	-	xylose isomerase
757	 72.28	+1	938211..939689	+	492	115361074	-	Bamb_6333	-	xylulokinase
758	 65.69	0	939789..940817	+	342	115361075	-	Bamb_6334	-	D-xylose ABC transporter, periplasmic substrate-binding protein
759	 68.85	0	940889..942448	+	519	115361076	-	Bamb_6335	-	xylose transporter ATP-binding subunit
760	 69.42	0	942445..943644	+	399	115361077	-	Bamb_6336	-	inner-membrane translocator
761	 69.88	0	943663..944595	-	310	115361078	-	Bamb_6337	-	LysR family transcriptional regulator
762	 67.24	0	944665..945540	+	291	115361079	-	Bamb_6338	-	putative oxidoreductase
763	 62.91	0	945608..946006	-	132	115361080	-	Bamb_6339	-	cupin 2 domain-containing protein
764	 65.05	0	946138..947001	-	287	115361081	-	Bamb_6340	-	NmrA family protein
765	 69.67	0	947112..948011	+	299	115361082	-	Bamb_6341	-	LysR family transcriptional regulator
766	 59.77	-1	948067..948240	-	57	115361083	-	Bamb_6342	-	hypothetical protein
767	 64.39	0	948237..949247	-	336	115361084	-	Bamb_6343	-	hypothetical protein
768	 69.88	0	949369..951327	-	652	115361085	-	Bamb_6344	-	beta strand repeat-containing protein
769	 68.70	0	951565..953085	-	506	115361086	-	Bamb_6345	-	diguanylate cyclase
770	 70.60	+1	953298..954770	-	490	115361087	-	Bamb_6346	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
771	 61.99	0	954882..955373	-	163	115361088	-	Bamb_6347	-	AsnC family transcriptional regulator
772	 70.09	0	955460..956860	-	466	115361089	-	Bamb_6348	-	hypothetical protein
773	 72.06	+1	957022..957948	-	308	115361090	-	Bamb_6349	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
774	 72.24	+1	957961..958821	-	286	115361091	-	Bamb_6350	-	GCN5-related N-acetyltransferase
775	 63.83	0	959301..959969	+	222	115361092	-	Bamb_6351	-	haloacid dehalogenase, type II
776	 68.55	0	960142..961680	+	512	115361093	-	Bamb_6352	-	methyl-accepting chemotaxis sensory transducer
777	 70.63	+1	961713..962141	-	142	115361094	-	Bamb_6353	-	hypothetical protein
778	 66.04	0	962356..963939	+	527	115361095	-	Bamb_6354	-	extracellular solute-binding protein
779	 67.09	0	964019..964972	+	317	115361096	-	Bamb_6355	-	binding-protein-dependent transport systems inner membrane component
780	 70.52	+1	965078..965959	+	293	115361097	-	Bamb_6356	-	binding-protein-dependent transport systems inner membrane component
781	 70.03	0	965959..967833	+	624	115361098	-	Bamb_6357	-	ABC transporter related
782	 68.31	0	967974..969308	+	444	115361099	-	Bamb_6358	-	FAD dependent oxidoreductase
783	 70.18	0	969395..969850	+	151	115361100	-	Bamb_6359	-	AraC family transcriptional regulator
784	 67.89	0	969972..970706	+	244	115361101	-	Bamb_6360	-	protein of unknown function DUF861, cupin_3
785	 69.68	0	970709..972034	+	441	115361102	-	Bamb_6361	-	FAD dependent oxidoreductase
786	 67.65	0	972124..973449	+	441	115361103	-	Bamb_6362	-	FAD dependent oxidoreductase
787	 69.25	0	973446..974915	+	489	115361104	-	Bamb_6363	-	betaine-aldehyde dehydrogenase
788	 66.16	0	974947..976134	+	395	115361105	-	Bamb_6364	-	amidohydrolase
789	 64.78	0	976304..977206	+	300	115361106	-	Bamb_6365	-	GCN5-related N-acetyltransferase
790	 66.89	0	977238..979457	-	739	115361107	-	Bamb_6366	-	putative transmembrane protein
791	 67.81	0	980170..982359	+	729	115361108	-	Bamb_6367	-	TonB-dependent siderophore receptor
792	 65.93	0	982384..983199	-	271	115361109	-	Bamb_6368	-	two component AraC family transcriptional regulator
793	 67.61	0	984107..987721	+	1204	115361110	-	Bamb_6369	-	YadA domain-containing protein
794	 67.83	0	987837..989207	-	456	115361111	-	Bamb_6370	-	TolC family type I secretion outer membrane protein
795	 61.90	0	989388..1000598	-	3736	115361112	-	Bamb_6371	-	hypothetical protein
796	 67.02	0	1000688..1002112	-	474	115361113	-	Bamb_6372	-	HlyD family type I secretion membrane fusion protein
797	 69.49	0	1002096..1004291	-	731	115361114	-	Bamb_6373	-	ABC transporter related
798	 70.69	+1	1004887..1006128	-	413	115361115	-	Bamb_6374	-	citrate synthase
799	 69.47	0	1006189..1006581	-	130	115361116	-	Bamb_6375	-	glyoxalase/bleomycin resistance protein/dioxygenase
800	 66.20	0	1006642..1007928	-	428	115361117	-	Bamb_6376	-	major facilitator transporter
801	 68.77	0	1008025..1008783	-	252	115361118	-	Bamb_6377	-	short-chain dehydrogenase/reductase SDR
802	 68.33	0	1009098..1010060	+	320	115361119	-	Bamb_6378	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
803	 66.96	0	1010244..1010588	-	114	115361120	-	Bamb_6379	-	hypothetical protein
804	 63.22	0	1010683..1012803	+	706	115361121	-	Bamb_6380	-	putative outer membrane protein
805	 69.34	0	1012838..1014070	+	410	115361122	-	Bamb_6381	-	hypothetical protein
806	 62.67	0	1014606..1014905	+	99	115361123	-	Bamb_6382	-	histone family protein nucleoid-structuring protein H-NS
807	 60.73	-1	1014919..1015137	+	72	115361124	-	Bamb_6383	-	hypothetical protein
808	 62.28	0	1015426..1015881	-	151	115361125	-	Bamb_6384	-	alkylhydroperoxidase
809	 64.75	0	1015907..1016323	-	138	115361126	-	Bamb_6385	-	cupin 2 domain-containing protein
810	 68.72	0	1016443..1017855	-	470	115361127	-	Bamb_6386	-	GntR family transcriptional regulator
811	 61.49	-1	1018003..1018659	+	218	115361128	-	Bamb_6387	-	metal-dependent phosphohydrolase
812	 63.49	0	1018973..1019413	+	146	115361129	-	Bamb_6388	-	heat shock protein Hsp20
813	 64.95	0	1019429..1019836	+	135	115361130	-	Bamb_6389	-	heat shock protein Hsp20
814	 63.48	0	1019932..1020495	+	187	115361131	-	Bamb_6390	-	heat shock protein Hsp20
815	 59.61	-1	1020532..1020786	-	84	115361132	-	Bamb_6391	-	hypothetical protein
816	 64.94	0	1020892..1022514	-	540	115361133	groEL	Bamb_6392	-	chaperonin GroEL
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.