IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
668	 63.40	0	827659..828453	-	264	115360985	-	Bamb_6244	-	OmpA/MotB domain-containing protein
669	 68.87	0	828564..831917	-	1117	115360986	-	Bamb_6245	-	YadA domain-containing protein
670	 51.52	-2	832700..832996	-	98	115360987	-	Bamb_6246	-	hypothetical protein
671	 61.25	-1	833219..833956	-	245	115360988	-	Bamb_6247	-	two component transcriptional regulator
672	 69.82	0	834340..840330	+	1996	115360989	-	Bamb_6248	-	excinuclease ABC, A subunit
673	 66.24	0	840411..841352	-	313	115360990	-	Bamb_6249	-	extracellular solute-binding protein
674	 63.99	0	841367..842674	-	435	115360991	-	Bamb_6250	-	sodium:dicarboxylate symporter
675	 64.74	0	842988..843971	-	327	115360992	-	Bamb_6251	-	LysR family transcriptional regulator
676	 64.71	0	844081..845409	+	442	115360993	-	Bamb_6252	-	sodium:dicarboxylate symporter
677	 64.93	0	845418..846740	+	440	115360994	-	Bamb_6253	-	aminotransferase, class V
678	 56.11	-2	846901..847203	+	100	115360995	-	Bamb_6254	-	electron transfer flavoprotein alpha subunit-like protein
679	 65.98	0	847193..848068	+	291	115360996	-	Bamb_6255	-	HpcH/HpaI aldolase
680	 65.68	0	848136..849050	-	304	115360997	-	Bamb_6256	-	LysR family transcriptional regulator
681	 64.96	0	849165..849575	+	136	115360998	-	Bamb_6257	-	endoribonuclease L-PSP
682	 64.45	0	849635..850582	+	315	115360999	-	Bamb_6258	-	AraC family transcriptional regulator
683	 62.32	0	850649..851131	-	160	115361000	-	Bamb_6259	-	hypothetical protein
684	 64.44	0	851253..852107	-	284	115361001	-	Bamb_6260	-	ThiJ/PfpI domain-containing protein
685	 61.71	-1	852210..852956	-	248	115361002	-	Bamb_6261	-	short-chain dehydrogenase/reductase SDR
686	 57.73	-1	853348..854388	+	346	115361003	-	Bamb_6262	-	lipase, class 3
687	 66.29	0	854806..855861	+	351	115361004	-	Bamb_6263	-	aldo/keto reductase
688	 65.36	0	855915..857450	+	511	115361005	-	Bamb_6264	-	DEAD/DEAH box helicase domain-containing protein
689	 57.01	-2	857919..858353	-	144	115361006	-	Bamb_6265	-	hypothetical protein
690	 55.97	-2	858502..858744	+	80	115361007	-	Bamb_6266	-	hypothetical protein
691	 60.60	-1	859499..860470	-	323	115361008	-	Bamb_6267	-	putative signal peptide protein
692	 65.59	0	860671..862059	-	462	115361009	-	Bamb_6268	-	major facilitator transporter
693	 68.02	0	862160..863338	-	392	115361010	-	Bamb_6269	-	L-carnitine dehydratase/bile acid-inducible protein F
694	 65.28	0	863353..864510	-	385	115361011	-	Bamb_6270	-	acyl-CoA dehydrogenase domain-containing protein
695	 69.70	0	864541..865398	-	285	115361012	-	Bamb_6271	-	hypothetical protein
696	 68.77	0	865526..866476	+	316	115361013	-	Bamb_6272	-	LysR family transcriptional regulator
697	 67.76	0	866561..867295	-	244	115361014	-	Bamb_6273	-	extracellular solute-binding protein
698	 64.72	0	867390..867749	-	119	115361015	-	Bamb_6274	-	antibiotic biosynthesis monooxygenase
699	 63.47	0	868016..868453	+	145	115361016	-	Bamb_6275	-	hypothetical protein
700	 67.52	0	868559..869968	+	469	115361017	-	Bamb_6276	-	response regulator receiver modulated metal dependent phosphohydrolase
701	 68.12	0	870047..871831	+	594	115361018	-	Bamb_6277	-	periplasmic sensor signal transduction histidine kinase
702	 70.29	0	871856..872932	-	358	115361019	-	Bamb_6278	-	poly(3-hydroxybutyrate) depolymerase-like protein
703	 68.43	0	873273..874181	-	302	115361020	-	Bamb_6279	-	LysR family transcriptional regulator
704	 69.96	0	874463..875404	+	313	115361021	-	Bamb_6280	-	pyruvate carboxyltransferase
705	 66.49	0	875412..876563	+	383	115361022	-	Bamb_6281	-	L-carnitine dehydratase/bile acid-inducible protein F
706	 64.79	0	876723..878162	+	479	115361023	-	Bamb_6282	-	major facilitator transporter
707	 65.89	0	878205..878588	-	127	115361024	-	Bamb_6283	-	GtrA family protein
708	 66.28	0	878604..879647	-	347	115361025	-	Bamb_6284	-	glycosyl transferase family protein
709	 68.33	0	879671..881050	-	459	115361026	-	Bamb_6285	-	hypothetical protein
710	 63.97	0	881047..882456	-	469	115361027	-	Bamb_6286	-	hypothetical protein
711	 55.74	-2	883320..883502	+	60	115361028	-	Bamb_6287	-	Flp/Fap pilin component
712	 60.87	-1	883671..883877	+	68	115361029	-	Bamb_6288	-	Flp/Fap pilin component
713	 67.59	0	883909..884451	+	180	115361030	-	Bamb_6289	-	peptidase A24A, prepilin type IV
714	 69.38	0	884484..885884	+	466	115361031	-	Bamb_6290	-	AAA ATPase
715	 68.20	0	885920..886765	+	281	115361032	-	Bamb_6291	-	Flp pilus assembly CpaB
716	 70.97	+1	886879..888852	+	657	115361033	-	Bamb_6292	-	type II and III secretion system protein
717	 67.68	0	888873..889169	+	98	115361034	-	Bamb_6293	-	hypothetical protein
718	 67.06	0	889195..890466	+	423	115361035	-	Bamb_6294	-	hypothetical protein
719	 65.54	0	890480..891013	+	177	115361036	-	Bamb_6295	-	TadE family protein
720	 62.84	0	891010..891453	+	147	115361037	-	Bamb_6296	-	TadE family protein
721	 68.98	0	891474..892682	+	402	115361038	-	Bamb_6297	-	response regulator receiver protein
722	 65.72	0	892702..894069	+	455	115361039	-	Bamb_6298	-	type II secretion system protein E
723	 65.44	0	894103..895080	+	325	115361040	-	Bamb_6299	-	type II secretion system protein
724	 65.74	0	895119..896090	+	323	115361041	-	Bamb_6300	-	type II secretion system protein
725	 68.72	0	896820..899549	+	909	115361042	-	Bamb_6301	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
726	 66.67	0	899546..900064	+	172	115361043	-	Bamb_6302	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
727	 67.37	0	900061..901062	+	333	115361044	-	Bamb_6303	-	hypothetical protein
728	 67.14	0	901091..902353	-	420	115361045	-	Bamb_6304	-	Serine-type D-Ala-D-Ala carboxypeptidase
729	 66.35	0	902498..903457	-	319	115361046	-	Bamb_6305	-	protein involved in MetA-pathway of phenol degradation-like protein
730	 66.86	0	903491..904018	-	175	115361047	-	Bamb_6306	-	flavin reductase domain-containing protein
731	 67.55	0	904024..905262	-	412	115361048	-	Bamb_6307	-	hypothetical protein
732	 69.20	0	905326..906114	-	262	115361049	-	Bamb_6308	-	short chain dehydrogenase
733	 68.62	0	906194..907423	-	409	115361050	-	Bamb_6309	-	carboxymethylenebutenolidase
734	 67.45	0	907776..908801	+	341	115361051	-	Bamb_6310	-	AraC family transcriptional regulator
735	 66.04	0	909014..910123	-	369	115361052	-	Bamb_6311	-	alcohol dehydrogenase
736	 66.30	0	910180..910455	-	91	115361053	-	Bamb_6312	-	regulator protein FrmR
737	 63.82	0	910808..912001	+	397	115361054	-	Bamb_6313	-	major facilitator transporter
738	 63.32	0	912054..913187	+	377	115361055	-	Bamb_6314	-	porin
739	 68.81	0	913395..914843	-	482	115361056	-	Bamb_6315	-	amidase
740	 65.92	0	915416..916897	+	493	115361057	-	Bamb_6316	-	GntR family transcriptional regulator
741	 59.62	-1	917089..917556	+	155	115361058	-	Bamb_6317	-	antibiotic biosynthesis monooxygenase
742	 69.16	0	917660..918622	-	320	115361059	-	Bamb_6318	-	LysR family transcriptional regulator
743	 69.79	0	918825..919946	+	373	115361060	-	Bamb_6319	-	amidohydrolase
744	 66.67	0	920000..920794	+	264	115361061	-	Bamb_6320	-	extracellular solute-binding protein
745	 65.99	0	920850..922034	+	394	115361062	-	Bamb_6321	-	porin
746	 69.53	0	924056..925069	-	337	115361063	-	Bamb_6322	-	LacI family transcription regulator
747	 69.18	0	925303..926457	+	384	115361064	-	Bamb_6323	-	ABC transporter related
748	 65.62	0	926521..927759	+	412	115361065	-	Bamb_6324	-	extracellular solute-binding protein
749	 65.47	0	927833..928750	+	305	115361066	-	Bamb_6325	-	binding-protein-dependent transport systems inner membrane component
750	 67.25	0	928762..929613	+	283	115361067	-	Bamb_6326	-	binding-protein-dependent transport systems inner membrane component
751	 69.96	0	929652..931622	+	656	115361068	-	Bamb_6327	-	Beta-galactosidase
752	 71.68	+1	931627..932922	+	431	115361069	-	Bamb_6328	-	major facilitator transporter
753	 67.70	0	932981..934141	-	386	115361070	-	Bamb_6329	-	arabinogalactan endo-1,4-beta-galactosidase
754	 69.33	0	934309..935397	-	362	115361071	-	Bamb_6330	-	aldose 1-epimerase
755	 68.51	0	935425..936618	-	397	115361072	-	Bamb_6331	-	AraC family transcriptional regulator
756	 66.82	0	936884..938206	+	440	115361073	-	Bamb_6332	-	xylose isomerase
757	 72.28	+1	938211..939689	+	492	115361074	-	Bamb_6333	-	xylulokinase
758	 65.69	0	939789..940817	+	342	115361075	-	Bamb_6334	-	D-xylose ABC transporter, periplasmic substrate-binding protein
759	 68.85	0	940889..942448	+	519	115361076	-	Bamb_6335	-	xylose transporter ATP-binding subunit
760	 69.42	0	942445..943644	+	399	115361077	-	Bamb_6336	-	inner-membrane translocator
761	 69.88	0	943663..944595	-	310	115361078	-	Bamb_6337	-	LysR family transcriptional regulator
762	 67.24	0	944665..945540	+	291	115361079	-	Bamb_6338	-	putative oxidoreductase
763	 62.91	0	945608..946006	-	132	115361080	-	Bamb_6339	-	cupin 2 domain-containing protein
764	 65.05	0	946138..947001	-	287	115361081	-	Bamb_6340	-	NmrA family protein
765	 69.67	0	947112..948011	+	299	115361082	-	Bamb_6341	-	LysR family transcriptional regulator
766	 59.77	-1	948067..948240	-	57	115361083	-	Bamb_6342	-	hypothetical protein
767	 64.39	0	948237..949247	-	336	115361084	-	Bamb_6343	-	hypothetical protein
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.