IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
604	 67.04	0	748975..750057	+	360	115360921	-	Bamb_6180	-	glycosyl transferase, group 1
605	 60.21	-1	750168..751220	-	350	115360922	-	Bamb_6181	-	IS605 family transposase OrfB
606	 66.43	0	751340..752185	+	281	115360923	-	Bamb_6182	-	2-dehydro-3-deoxyphosphooctonate aldolase
607	 68.33	0	752203..752742	+	179	115360924	-	Bamb_6183	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
608	 68.53	0	752726..753529	+	267	115360925	-	Bamb_6184	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
609	 68.15	0	753567..754442	+	291	115360926	-	Bamb_6185	-	KpsF/GutQ family protein
610	 67.66	0	754505..755707	-	400	115360927	-	Bamb_6186	-	BNR repeat-containing glycosyl hydrolase
611	 64.65	0	755704..756942	-	412	115360928	-	Bamb_6187	-	hypothetical protein
612	 70.41	0	757153..757740	-	195	115360929	-	Bamb_6188	-	phosphoesterase, PA-phosphatase related
613	 63.50	0	757766..758650	-	294	115360930	-	Bamb_6189	-	UTP-glucose-1-phosphate uridylyltransferase
614	 60.26	-1	759009..759242	+	77	115360931	-	Bamb_6190	-	putative flagellar transcriptional activator FlhD
615	 66.34	0	759361..759669	+	102	115360932	-	Bamb_6191	-	histone family protein nucleoid-structuring protein H-NS
616	 69.36	0	759691..760767	-	358	115360933	-	Bamb_6192	-	DNA topoisomerase, type I, putative
617	 65.11	0	761256..762218	+	320	115360934	-	Bamb_6193	-	periplasmic binding protein/LacI transcriptional regulator
618	 69.57	0	762287..763801	+	504	115360935	-	Bamb_6194	-	ABC transporter related
619	 71.18	+1	763798..764838	+	346	115360936	-	Bamb_6195	-	inner-membrane translocator
620	 68.23	0	764835..765923	+	362	115360937	-	Bamb_6196	-	inner membrane ABC transporter permease protein YjfF
621	 67.22	0	766011..768359	-	782	115360938	-	Bamb_6197	-	periplasmic sensor signal transduction histidine kinase
622	 67.87	0	768337..769170	-	277	115360939	-	Bamb_6198	-	two component AraC family transcriptional regulator
623	 55.31	-2	769218..769490	-	90	115360940	-	Bamb_6199	-	hypothetical protein
624	 68.09	0	770163..770444	-	93	115360941	-	Bamb_6200	-	hypothetical protein
625	 69.10	0	770635..774696	+	1353	115360942	-	Bamb_6201	-	YadA domain-containing protein
626	 66.81	0	774764..775483	+	239	115360943	-	Bamb_6202	-	OmpA/MotB domain-containing protein
627	 62.47	0	775547..775927	+	126	115360944	-	Bamb_6203	-	hypothetical protein
628	 61.32	-1	775952..776194	+	80	115360945	-	Bamb_6204	-	hypothetical protein
629	 57.34	-2	776277..777059	-	260	115360946	-	Bamb_6205	-	integrase catalytic subunit
630	 59.62	-1	777113..777637	-	174	115360947	-	Bamb_6206	-	HMG-I and HMG-Y, DNA-binding domain-containing protein
631	 65.29	0	777691..778200	+	169	115360948	-	Bamb_6207	-	hypothetical protein
632	 64.73	0	778467..778982	+	171	115360949	-	Bamb_6208	-	hypothetical protein
633	 67.36	0	779319..780467	+	382	115360950	-	Bamb_6209	-	cytochrome c oxidase, subunit II
634	 64.57	0	780481..782241	+	586	115360951	-	Bamb_6210	-	cytochrome-c oxidase
635	 68.14	0	782238..782849	+	203	115360952	-	Bamb_6211	-	heme/copper-type cytochrome/quinol oxidase subunit 3-like protein
636	 64.45	0	782846..783568	+	240	115360953	-	Bamb_6212	-	cytochrome c oxidase, subunit III
637	 61.70	-1	783577..783918	+	113	115360954	-	Bamb_6213	-	small integral membrane protein
638	 62.54	0	783949..784263	+	104	115360955	-	Bamb_6214	-	high potential iron-sulfur protein
639	 66.46	0	784337..785302	+	321	115360956	-	Bamb_6215	-	LysR family transcriptional regulator
640	 65.33	0	785486..786760	+	424	115360957	-	Bamb_6216	-	sodium:dicarboxylate symporter
641	 65.09	0	786760..788214	+	484	115360958	-	Bamb_6217	-	aspartate racemase
642	 63.30	0	788400..788933	-	177	115360959	-	Bamb_6218	-	dehydratase
643	 63.64	0	788930..790021	-	363	115360960	-	Bamb_6219	-	carboxymuconolactone decarboxylase
644	 59.42	-1	790238..790996	+	252	115360961	-	Bamb_6220	-	short-chain dehydrogenase/reductase SDR
645	 64.63	0	791071..792348	+	425	115360962	-	Bamb_6221	-	crotonyl-CoA reductase
646	 67.31	0	792351..796265	+	1304	115360963	-	Bamb_6222	-	beta-ketoacyl synthase
647	 60.30	-1	796352..796681	+	109	115360964	-	Bamb_6223	-	phosphopantetheine-binding
648	 67.17	0	796751..797743	+	330	115360965	-	Bamb_6224	-	3-oxoacyl-(acyl-carrier-protein) synthase III
649	 63.11	0	797861..798619	-	252	115360966	-	Bamb_6225	-	short-chain dehydrogenase/reductase SDR
650	 69.71	0	798705..800477	-	590	115360967	-	Bamb_6226	-	pyruvate phosphate dikinase
651	 63.14	0	800487..802667	-	726	115360968	-	Bamb_6227	-	hypothetical protein
652	 63.02	0	802664..803404	-	246	115360969	-	Bamb_6228	-	hypothetical protein
653	 55.42	-2	803477..803725	-	82	115360970	-	Bamb_6229	-	hypothetical protein
654	 60.54	-1	803770..804732	+	320	115360971	-	Bamb_6230	-	hypothetical protein
655	 55.16	-2	804729..805232	+	167	115360972	-	Bamb_6231	-	phosphopantetheine-binding
656	 64.93	0	805349..806386	+	345	115360973	-	Bamb_6232	-	3-oxoacyl-(acyl-carrier-protein) synthase III
657	 66.27	0	806469..809972	+	1167	115360974	-	Bamb_6233	-	2-oxoacid ferredoxin oxidoreductase
658	 66.50	0	810131..811879	-	582	115360975	-	Bamb_6234	-	hypothetical protein
659	 67.43	0	812344..816255	+	1303	115360976	-	Bamb_6235	-	beta-ketoacyl synthase
660	 62.17	0	816309..817487	+	392	115360977	-	Bamb_6236	-	Rieske (2Fe-2S) domain-containing protein
661	 61.80	-1	817484..818284	-	266	115360978	-	Bamb_6237	-	diguanylate phosphodiesterase
662	 65.54	0	818867..821080	+	737	115360979	-	Bamb_6238	-	periplasmic sensor signal transduction histidine kinase
663	 63.22	0	821172..822419	-	415	115360980	-	Bamb_6239	-	UDP-glucuronosyl/UDP-glucosyltransferase
664	 58.01	-1	822616..824094	+	492	115360981	-	Bamb_6240	-	condensation domain-containing protein
665	 60.89	-1	824094..825425	+	443	115360982	-	Bamb_6241	-	UDP-glucuronosyl/UDP-glucosyltransferase
666	 62.90	0	825410..826630	+	406	115360983	-	Bamb_6242	-	condensation domain-containing protein
667	 64.10	0	826743..827561	-	272	115360984	-	Bamb_6243	-	hypothetical protein
668	 63.40	0	827659..828453	-	264	115360985	-	Bamb_6244	-	OmpA/MotB domain-containing protein
669	 68.87	0	828564..831917	-	1117	115360986	-	Bamb_6245	-	YadA domain-containing protein
670	 51.52	-2	832700..832996	-	98	115360987	-	Bamb_6246	-	hypothetical protein
671	 61.25	-1	833219..833956	-	245	115360988	-	Bamb_6247	-	two component transcriptional regulator
672	 69.82	0	834340..840330	+	1996	115360989	-	Bamb_6248	-	excinuclease ABC, A subunit
673	 66.24	0	840411..841352	-	313	115360990	-	Bamb_6249	-	extracellular solute-binding protein
674	 63.99	0	841367..842674	-	435	115360991	-	Bamb_6250	-	sodium:dicarboxylate symporter
675	 64.74	0	842988..843971	-	327	115360992	-	Bamb_6251	-	LysR family transcriptional regulator
676	 64.71	0	844081..845409	+	442	115360993	-	Bamb_6252	-	sodium:dicarboxylate symporter
677	 64.93	0	845418..846740	+	440	115360994	-	Bamb_6253	-	aminotransferase, class V
678	 56.11	-2	846901..847203	+	100	115360995	-	Bamb_6254	-	electron transfer flavoprotein alpha subunit-like protein
679	 65.98	0	847193..848068	+	291	115360996	-	Bamb_6255	-	HpcH/HpaI aldolase
680	 65.68	0	848136..849050	-	304	115360997	-	Bamb_6256	-	LysR family transcriptional regulator
681	 64.96	0	849165..849575	+	136	115360998	-	Bamb_6257	-	endoribonuclease L-PSP
682	 64.45	0	849635..850582	+	315	115360999	-	Bamb_6258	-	AraC family transcriptional regulator
683	 62.32	0	850649..851131	-	160	115361000	-	Bamb_6259	-	hypothetical protein
684	 64.44	0	851253..852107	-	284	115361001	-	Bamb_6260	-	ThiJ/PfpI domain-containing protein
685	 61.71	-1	852210..852956	-	248	115361002	-	Bamb_6261	-	short-chain dehydrogenase/reductase SDR
686	 57.73	-1	853348..854388	+	346	115361003	-	Bamb_6262	-	lipase, class 3
687	 66.29	0	854806..855861	+	351	115361004	-	Bamb_6263	-	aldo/keto reductase
688	 65.36	0	855915..857450	+	511	115361005	-	Bamb_6264	-	DEAD/DEAH box helicase domain-containing protein
689	 57.01	-2	857919..858353	-	144	115361006	-	Bamb_6265	-	hypothetical protein
690	 55.97	-2	858502..858744	+	80	115361007	-	Bamb_6266	-	hypothetical protein
691	 60.60	-1	859499..860470	-	323	115361008	-	Bamb_6267	-	putative signal peptide protein
692	 65.59	0	860671..862059	-	462	115361009	-	Bamb_6268	-	major facilitator transporter
693	 68.02	0	862160..863338	-	392	115361010	-	Bamb_6269	-	L-carnitine dehydratase/bile acid-inducible protein F
694	 65.28	0	863353..864510	-	385	115361011	-	Bamb_6270	-	acyl-CoA dehydrogenase domain-containing protein
695	 69.70	0	864541..865398	-	285	115361012	-	Bamb_6271	-	hypothetical protein
696	 68.77	0	865526..866476	+	316	115361013	-	Bamb_6272	-	LysR family transcriptional regulator
697	 67.76	0	866561..867295	-	244	115361014	-	Bamb_6273	-	extracellular solute-binding protein
698	 64.72	0	867390..867749	-	119	115361015	-	Bamb_6274	-	antibiotic biosynthesis monooxygenase
699	 63.47	0	868016..868453	+	145	115361016	-	Bamb_6275	-	hypothetical protein
700	 67.52	0	868559..869968	+	469	115361017	-	Bamb_6276	-	response regulator receiver modulated metal dependent phosphohydrolase
701	 68.12	0	870047..871831	+	594	115361018	-	Bamb_6277	-	periplasmic sensor signal transduction histidine kinase
702	 70.29	0	871856..872932	-	358	115361019	-	Bamb_6278	-	poly(3-hydroxybutyrate) depolymerase-like protein
703	 68.43	0	873273..874181	-	302	115361020	-	Bamb_6279	-	LysR family transcriptional regulator
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.