IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
568	 62.35	0	705676..705930	-	84	115360885	-	Bamb_6144	-	phosphopantetheine-binding
569	 69.86	0	705990..707084	-	364	115360886	-	Bamb_6145	-	hypothetical protein
570	 70.48	+1	707098..708435	-	445	115360887	-	Bamb_6146	-	hypothetical protein
571	 68.50	0	708425..709186	-	253	115360888	-	Bamb_6147	-	hypothetical protein
572	 69.79	0	709183..710400	-	405	115360889	-	Bamb_6148	-	hypothetical protein
573	 71.25	+1	710372..711091	-	239	115360890	-	Bamb_6149	-	ABC transporter related
574	 68.80	0	711088..712872	-	594	115360891	-	Bamb_6150	-	AMP-dependent synthetase and ligase
575	 65.08	0	713253..714200	+	315	115360892	-	Bamb_6151	-	fatty acid desaturase
576	 64.20	0	714261..715112	+	283	115360893	-	Bamb_6152	-	hypothetical protein
577	 65.66	0	715731..716723	+	330	115360894	-	Bamb_6153	-	LysR family transcriptional regulator
578	 69.94	0	716937..717761	+	274	115360895	-	Bamb_6154	-	alpha/beta hydrolase fold
579	 68.98	0	717855..719450	-	531	115360896	-	Bamb_6155	-	general substrate transporter
580	 72.52	+1	719518..720183	+	221	115360897	-	Bamb_6156	-	hypothetical protein
581	 65.82	0	720134..721201	-	355	115360898	-	Bamb_6157	-	porin
582	 67.52	0	721429..723423	-	664	115360899	-	Bamb_6158	-	acetyl-CoA synthetase
583	 72.55	+1	723676..725529	-	617	115360900	-	Bamb_6159	-	RNA polymerase, sigma 28 subunit
584	 69.18	0	725546..725863	-	105	115360901	-	Bamb_6160	-	high potential iron-sulfur protein
585	 71.53	+1	725939..727213	-	424	115360902	-	Bamb_6161	-	cytochrome c, class I
586	 66.32	0	727289..729016	-	575	115360903	-	Bamb_6162	-	Pyrrolo-quinoline quinone
587	 73.33	+1	729789..730793	-	334	115360904	-	Bamb_6163	-	prolyl aminopeptidase
588	 69.02	0	731241..733241	+	666	115360905	-	Bamb_6164	-	Fis family GAF modulated sigma54 specific transcriptional regulator
589	 69.05	0	733673..734596	+	307	115360906	-	Bamb_6165	-	pyrroloquinoline quinone biosynthesis protein PqqB
590	 67.36	0	734599..735318	+	239	115360907	-	Bamb_6166	-	pyrroloquinoline quinone biosynthesis protein PqqC
591	 68.24	0	735342..735596	+	84	115360908	-	Bamb_6167	-	coenzyme PQQ synthesis D
592	 66.76	0	735598..736722	+	374	115360909	-	Bamb_6168	-	pyrroloquinoline quinone biosynthesis protein PqqE
593	 49.81	-2	737001..737261	+	86	115360910	-	Bamb_6169	-	hypothetical protein
594	 64.05	0	737800..738870	+	356	115360911	-	Bamb_6170	-	AraC family transcriptional regulator
595	 59.18	-1	739368..739661	-	97	115360912	-	Bamb_6171	-	hypothetical protein
596	 67.13	0	739712..740788	+	358	115360913	-	Bamb_6172	-	undecaprenyl-phosphate galactose phosphotransferase
597	 68.62	0	740976..742151	+	391	115360914	-	Bamb_6173	-	polysaccharide export protein
598	 66.90	0	742148..742582	+	144	115360915	-	Bamb_6174	-	protein tyrosine phosphatase
599	 66.58	0	742635..744872	+	745	115360916	-	Bamb_6175	-	exopolysaccharide transport protein family
600	 66.26	0	744939..746171	+	410	115360917	-	Bamb_6176	-	hypothetical protein
601	 65.75	0	746200..747399	+	399	115360918	-	Bamb_6177	-	capsule polysaccharide biosynthesis
602	 66.29	0	747401..747931	+	176	115360919	-	Bamb_6178	-	hexapaptide repeat-containing transferase
603	 67.37	0	747928..748920	+	330	115360920	-	Bamb_6179	-	hypothetical protein
604	 67.04	0	748975..750057	+	360	115360921	-	Bamb_6180	-	glycosyl transferase, group 1
605	 60.21	-1	750168..751220	-	350	115360922	-	Bamb_6181	-	IS605 family transposase OrfB
606	 66.43	0	751340..752185	+	281	115360923	-	Bamb_6182	-	2-dehydro-3-deoxyphosphooctonate aldolase
607	 68.33	0	752203..752742	+	179	115360924	-	Bamb_6183	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
608	 68.53	0	752726..753529	+	267	115360925	-	Bamb_6184	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
609	 68.15	0	753567..754442	+	291	115360926	-	Bamb_6185	-	KpsF/GutQ family protein
610	 67.66	0	754505..755707	-	400	115360927	-	Bamb_6186	-	BNR repeat-containing glycosyl hydrolase
611	 64.65	0	755704..756942	-	412	115360928	-	Bamb_6187	-	hypothetical protein
612	 70.41	0	757153..757740	-	195	115360929	-	Bamb_6188	-	phosphoesterase, PA-phosphatase related
613	 63.50	0	757766..758650	-	294	115360930	-	Bamb_6189	-	UTP-glucose-1-phosphate uridylyltransferase
614	 60.26	-1	759009..759242	+	77	115360931	-	Bamb_6190	-	putative flagellar transcriptional activator FlhD
615	 66.34	0	759361..759669	+	102	115360932	-	Bamb_6191	-	histone family protein nucleoid-structuring protein H-NS
616	 69.36	0	759691..760767	-	358	115360933	-	Bamb_6192	-	DNA topoisomerase, type I, putative
617	 65.11	0	761256..762218	+	320	115360934	-	Bamb_6193	-	periplasmic binding protein/LacI transcriptional regulator
618	 69.57	0	762287..763801	+	504	115360935	-	Bamb_6194	-	ABC transporter related
619	 71.18	+1	763798..764838	+	346	115360936	-	Bamb_6195	-	inner-membrane translocator
620	 68.23	0	764835..765923	+	362	115360937	-	Bamb_6196	-	inner membrane ABC transporter permease protein YjfF
621	 67.22	0	766011..768359	-	782	115360938	-	Bamb_6197	-	periplasmic sensor signal transduction histidine kinase
622	 67.87	0	768337..769170	-	277	115360939	-	Bamb_6198	-	two component AraC family transcriptional regulator
623	 55.31	-2	769218..769490	-	90	115360940	-	Bamb_6199	-	hypothetical protein
624	 68.09	0	770163..770444	-	93	115360941	-	Bamb_6200	-	hypothetical protein
625	 69.10	0	770635..774696	+	1353	115360942	-	Bamb_6201	-	YadA domain-containing protein
626	 66.81	0	774764..775483	+	239	115360943	-	Bamb_6202	-	OmpA/MotB domain-containing protein
627	 62.47	0	775547..775927	+	126	115360944	-	Bamb_6203	-	hypothetical protein
628	 61.32	-1	775952..776194	+	80	115360945	-	Bamb_6204	-	hypothetical protein
629	 57.34	-2	776277..777059	-	260	115360946	-	Bamb_6205	-	integrase catalytic subunit
630	 59.62	-1	777113..777637	-	174	115360947	-	Bamb_6206	-	HMG-I and HMG-Y, DNA-binding domain-containing protein
631	 65.29	0	777691..778200	+	169	115360948	-	Bamb_6207	-	hypothetical protein
632	 64.73	0	778467..778982	+	171	115360949	-	Bamb_6208	-	hypothetical protein
633	 67.36	0	779319..780467	+	382	115360950	-	Bamb_6209	-	cytochrome c oxidase, subunit II
634	 64.57	0	780481..782241	+	586	115360951	-	Bamb_6210	-	cytochrome-c oxidase
635	 68.14	0	782238..782849	+	203	115360952	-	Bamb_6211	-	heme/copper-type cytochrome/quinol oxidase subunit 3-like protein
636	 64.45	0	782846..783568	+	240	115360953	-	Bamb_6212	-	cytochrome c oxidase, subunit III
637	 61.70	-1	783577..783918	+	113	115360954	-	Bamb_6213	-	small integral membrane protein
638	 62.54	0	783949..784263	+	104	115360955	-	Bamb_6214	-	high potential iron-sulfur protein
639	 66.46	0	784337..785302	+	321	115360956	-	Bamb_6215	-	LysR family transcriptional regulator
640	 65.33	0	785486..786760	+	424	115360957	-	Bamb_6216	-	sodium:dicarboxylate symporter
641	 65.09	0	786760..788214	+	484	115360958	-	Bamb_6217	-	aspartate racemase
642	 63.30	0	788400..788933	-	177	115360959	-	Bamb_6218	-	dehydratase
643	 63.64	0	788930..790021	-	363	115360960	-	Bamb_6219	-	carboxymuconolactone decarboxylase
644	 59.42	-1	790238..790996	+	252	115360961	-	Bamb_6220	-	short-chain dehydrogenase/reductase SDR
645	 64.63	0	791071..792348	+	425	115360962	-	Bamb_6221	-	crotonyl-CoA reductase
646	 67.31	0	792351..796265	+	1304	115360963	-	Bamb_6222	-	beta-ketoacyl synthase
647	 60.30	-1	796352..796681	+	109	115360964	-	Bamb_6223	-	phosphopantetheine-binding
648	 67.17	0	796751..797743	+	330	115360965	-	Bamb_6224	-	3-oxoacyl-(acyl-carrier-protein) synthase III
649	 63.11	0	797861..798619	-	252	115360966	-	Bamb_6225	-	short-chain dehydrogenase/reductase SDR
650	 69.71	0	798705..800477	-	590	115360967	-	Bamb_6226	-	pyruvate phosphate dikinase
651	 63.14	0	800487..802667	-	726	115360968	-	Bamb_6227	-	hypothetical protein
652	 63.02	0	802664..803404	-	246	115360969	-	Bamb_6228	-	hypothetical protein
653	 55.42	-2	803477..803725	-	82	115360970	-	Bamb_6229	-	hypothetical protein
654	 60.54	-1	803770..804732	+	320	115360971	-	Bamb_6230	-	hypothetical protein
655	 55.16	-2	804729..805232	+	167	115360972	-	Bamb_6231	-	phosphopantetheine-binding
656	 64.93	0	805349..806386	+	345	115360973	-	Bamb_6232	-	3-oxoacyl-(acyl-carrier-protein) synthase III
657	 66.27	0	806469..809972	+	1167	115360974	-	Bamb_6233	-	2-oxoacid ferredoxin oxidoreductase
658	 66.50	0	810131..811879	-	582	115360975	-	Bamb_6234	-	hypothetical protein
659	 67.43	0	812344..816255	+	1303	115360976	-	Bamb_6235	-	beta-ketoacyl synthase
660	 62.17	0	816309..817487	+	392	115360977	-	Bamb_6236	-	Rieske (2Fe-2S) domain-containing protein
661	 61.80	-1	817484..818284	-	266	115360978	-	Bamb_6237	-	diguanylate phosphodiesterase
662	 65.54	0	818867..821080	+	737	115360979	-	Bamb_6238	-	periplasmic sensor signal transduction histidine kinase
663	 63.22	0	821172..822419	-	415	115360980	-	Bamb_6239	-	UDP-glucuronosyl/UDP-glucosyltransferase
664	 58.01	-1	822616..824094	+	492	115360981	-	Bamb_6240	-	condensation domain-containing protein
665	 60.89	-1	824094..825425	+	443	115360982	-	Bamb_6241	-	UDP-glucuronosyl/UDP-glucosyltransferase
666	 62.90	0	825410..826630	+	406	115360983	-	Bamb_6242	-	condensation domain-containing protein
667	 64.10	0	826743..827561	-	272	115360984	-	Bamb_6243	-	hypothetical protein
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.