IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
13	 69.91	0	12666..13004	+	112	115360330	-	Bamb_5586	-	hypothetical protein
14	 71.53	+1	13001..15220	+	739	115360331	-	Bamb_5587	-	phospholipase D/transphosphatidylase
15	 72.84	+1	15211..16020	+	269	115360332	-	Bamb_5588	-	endonuclease/exonuclease/phosphatase
16	 69.94	0	16033..16521	+	162	115360333	-	Bamb_5589	-	hypothetical protein
17	 71.53	+1	16822..20232	+	1136	115360334	-	Bamb_5590	-	alpha amylase, catalytic region
18	 69.01	0	20229..23642	+	1137	115360335	-	Bamb_5591	-	trehalose synthase
19	 70.39	0	23639..25840	+	733	115360336	-	Bamb_5592	-	glycogen branching enzyme
20	 69.31	0	25875..27989	+	704	115360337	-	Bamb_5593	-	glycogen debranching enzyme GlgX
21	 71.21	+1	27999..29870	+	623	115360338	-	Bamb_5594	-	malto-oligosyltrehalose trehalohydrolase
22	 74.28	+1	29867..32098	+	743	115360339	-	Bamb_5595	-	4-alpha-glucanotransferase
23	 72.79	+1	32095..34869	+	924	115360340	-	Bamb_5596	-	malto-oligosyltrehalose synthase
24	 61.77	-1	34938..35366	-	142	115360341	-	Bamb_5597	-	GCN5-related N-acetyltransferase
25	 65.01	0	35405..36127	-	240	115360342	-	Bamb_5598	-	NADPH-dependent FMN reductase
26	 66.12	0	36148..37254	-	368	115360343	-	Bamb_5599	-	bile acid:sodium symporter
27	 67.88	0	37285..37779	-	164	115360344	-	Bamb_5600	-	protein tyrosine phosphatase
28	 67.86	0	37802..38137	-	111	115360345	-	Bamb_5601	-	ArsR family transcriptional regulator
29	 66.83	0	38631..39878	+	415	115360346	-	Bamb_5602	-	phosphatidylserine decarboxylase-related
30	 65.24	0	39940..40149	-	69	115360347	-	Bamb_5603	-	hypothetical protein
31	 69.30	0	40420..40761	-	113	115360348	-	Bamb_5604	-	hypothetical protein
32	 68.67	0	40765..41313	-	182	115360349	-	Bamb_5605	-	PfpI family intracellular peptidase
33	 66.39	0	41555..41920	-	121	115360350	-	Bamb_5606	-	hypothetical protein
34	 75.37	+2	42012..42551	-	179	115360351	-	Bamb_5607	-	hypothetical protein
35	 66.39	0	42576..42932	+	118	115360352	-	Bamb_5608	-	hypothetical protein
36	 70.36	0	42975..44300	+	441	115360353	-	Bamb_5609	-	sodium/hydrogen exchanger
37	 70.28	0	44306..47104	-	932	115360354	-	Bamb_5610	-	ATP dependent DNA ligase
38	 67.16	0	47129..48136	-	335	115360355	-	Bamb_5611	-	Ku domain-containing protein
39	 68.37	0	48194..50302	-	702	115360356	katE	Bamb_5612	-	hydroperoxidase II
40	 68.99	0	50463..50849	-	128	115360357	-	Bamb_5613	-	hypothetical protein
41	 58.64	-1	50846..51007	-	53	115360358	-	Bamb_5614	-	hypothetical protein
42	 62.84	0	51062..51244	-	60	115360359	-	Bamb_5615	-	hypothetical protein
43	 68.40	0	51314..52753	-	479	115360360	-	Bamb_5616	-	RNA polymerase factor sigma-54
44	 74.76	+1	53175..53483	-	102	115360361	-	Bamb_5617	-	hypothetical protein
45	 68.59	0	53533..53844	-	103	115360362	-	Bamb_5618	-	hypothetical protein
46	 66.34	0	54567..54872	-	101	115360363	-	Bamb_5619	-	hypothetical protein
47	 68.25	0	55018..55269	+	83	115360364	-	Bamb_5620	-	hypothetical protein
48	 65.05	0	55364..55795	+	143	115360365	-	Bamb_5621	-	CBS domain-containing protein
49	 66.25	0	55886..56368	+	160	115360366	-	Bamb_5622	-	PRC-barrel domain-containing protein
50	 67.05	0	56623..57918	+	431	115360367	-	Bamb_5623	-	major facilitator superfamily metabolite/H(+) symporter
51	 65.48	0	57925..58764	+	279	115360368	-	Bamb_5624	-	extracellular solute-binding protein
52	 68.78	0	58790..60112	-	440	115360369	-	Bamb_5625	-	sodium:dicarboxylate symporter
53	 68.24	0	60165..61115	-	316	115360370	-	Bamb_5626	-	LysR family transcriptional regulator
54	 67.23	0	61170..62063	-	297	115360371	-	Bamb_5627	-	LysR family transcriptional regulator
55	 68.56	0	62286..62549	+	87	115360372	-	Bamb_5628	-	hypothetical protein
56	 73.00	+1	62597..63811	+	404	115360373	-	Bamb_5629	-	major facilitator transporter
57	 70.23	0	63897..64373	-	158	115360374	-	Bamb_5630	-	response regulator receiver protein
58	 74.62	+1	64607..65260	+	217	115360375	-	Bamb_5631	-	phage SPO1 DNA polymerase-related protein
59	 68.16	0	65668..66807	+	379	115360376	-	Bamb_5632	-	natural resistance-associated macrophage protein
60	 65.03	0	66958..67569	-	203	115360377	-	Bamb_5633	-	hypothetical protein
61	 70.42	0	67629..68240	-	203	115360378	-	Bamb_5634	-	hypothetical protein
62	 67.95	0	68269..69126	-	285	115360379	-	Bamb_5635	-	short-chain dehydrogenase/reductase SDR
63	 72.95	+1	69257..69829	-	190	115360380	-	Bamb_5636	-	hypothetical protein
64	 66.33	0	69918..70217	-	99	115360381	-	Bamb_5637	-	hypothetical protein
65	 69.87	0	70257..71285	-	342	115360382	-	Bamb_5638	-	short chain dehydrogenase
66	 68.40	0	71313..71717	-	134	115360383	-	Bamb_5639	-	transport-associated
67	 71.22	+1	71960..73276	+	438	115360384	-	Bamb_5640	-	glycosyl transferase, group 1
68	 67.52	0	73273..74322	+	349	115360385	-	Bamb_5641	-	NAD-dependent epimerase/dehydratase
69	 71.48	+1	74350..76656	-	768	115360386	-	Bamb_5642	-	multi-sensor hybrid histidine kinase
70	 70.62	+1	76797..77504	+	235	115360387	-	Bamb_5643	-	hypothetical protein
71	 73.16	+1	77483..78406	+	307	115360388	-	Bamb_5644	-	glycosyl transferase family protein
72	 67.03	0	78424..79791	-	455	115360389	-	Bamb_5645	-	two component, sigma54 specific, Fis family transcriptional regulator
73	 66.95	0	80141..81211	+	356	115360390	-	Bamb_5646	-	sigma-54 dependent trancsriptional regulator
74	 66.67	0	81261..82211	-	316	115360391	-	Bamb_5647	-	glycosyl transferase, group 1
75	 71.03	+1	82201..83277	-	358	115360392	-	Bamb_5648	-	glycosyl transferase family protein
76	 72.06	+1	83274..84275	-	333	115360393	-	Bamb_5649	-	glycosyl transferase family protein
77	 69.42	0	84272..86017	-	581	115360394	-	Bamb_5650	-	carbamoyltransferase
78	 73.48	+1	86021..87223	-	400	115360395	-	Bamb_5651	-	glycosyl transferase family protein
79	 71.24	+1	87220..87831	-	203	115360396	-	Bamb_5652	-	histidinol-phosphate phosphatase family protein
80	 70.24	0	87822..88577	-	251	115360397	-	Bamb_5653	-	short-chain dehydrogenase/reductase SDR
81	 70.29	0	88759..89172	-	137	115360398	-	Bamb_5654	-	hypothetical protein
82	 70.51	+1	89228..92035	-	935	115360399	-	Bamb_5655	-	response regulator receiver protein
83	 71.86	+1	92083..92949	-	288	115360400	-	Bamb_5656	-	transport-associated
84	 72.95	+1	93224..93589	-	121	115360401	-	Bamb_5657	-	hypothetical protein
85	 69.06	0	93883..95469	+	528	115360402	-	Bamb_5658	-	PAS/PAC sensor hybrid histidine kinase
86	 69.07	0	95545..95877	-	110	115360403	-	Bamb_5659	-	hypothetical protein
87	 70.15	0	95906..97111	-	401	115360404	-	Bamb_5660	-	alcohol dehydrogenase
88	 71.93	+1	97297..98835	-	512	115360405	-	Bamb_5661	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
89	 64.00	0	99129..100553	-	474	115360406	-	Bamb_5662	-	GntR family transcriptional regulator
90	 68.42	0	101139..101594	-	151	115360407	-	Bamb_5663	-	membrane protein
91	 66.89	0	101758..102210	-	150	115360408	-	Bamb_5664	-	phosphate-starvation-inducible E
92	 68.25	0	102731..103801	+	356	115360409	-	Bamb_5665	-	Dyp-type peroxidase family protein
93	 71.08	+1	103794..104609	+	271	115360410	-	Bamb_5666	-	Linocin_M18 bacteriocin protein
94	 61.48	-1	104710..104979	+	89	115360411	-	Bamb_5667	-	hypothetical protein
95	 66.60	0	105470..108331	+	953	115360412	-	Bamb_5668	-	ATPase
96	 67.32	0	108429..110708	+	759	115360413	-	Bamb_5669	-	oxidoreductase alpha (molybdopterin) subunit
97	 66.67	0	110845..112266	-	473	115360414	-	Bamb_5670	-	permease for cytosine/purines, uracil, thiamine, allantoin
98	 65.70	0	112614..113543	+	309	115360415	-	Bamb_5671	-	LysR family transcriptional regulator
99	 68.38	0	113602..114765	-	387	115360416	-	Bamb_5672	-	acetylornithine deacetylase
100	 72.57	+1	114758..115435	-	225	115360417	-	Bamb_5673	-	hypothetical protein
101	 63.01	0	115444..115881	-	145	115360418	-	Bamb_5674	-	endoribonuclease L-PSP
102	 69.14	0	116001..117413	-	470	115360419	-	Bamb_5675	-	flavin-containing monooxygenase FMO
103	 58.65	-1	117576..117974	-	132	115360420	-	Bamb_5676	-	hypothetical protein
104	 59.76	-1	117971..118216	-	81	115360421	-	Bamb_5677	-	AbrB family transcriptional regulator
105	 61.48	-1	118367..119485	-	372	115360422	-	Bamb_5678	-	Sel1 domain-containing protein
106	 61.54	-1	119939..120094	+	51	115360423	-	Bamb_5679	-	hypothetical protein
107	 67.85	0	120304..121317	+	337	115360424	-	Bamb_5680	-	tryptophanyl-tRNA synthetase II
108	 52.04	-2	121631..122095	+	154	115360425	-	Bamb_5681	-	hypothetical protein
109	 58.12	-1	122095..122445	+	116	115360426	-	Bamb_5682	-	hypothetical protein
110	 63.95	0	122503..123423	-	306	115360427	-	Bamb_5683	-	hypothetical protein
111	 66.07	0	123524..124531	-	335	115360428	-	Bamb_5684	-	cytochrome d ubiquinol oxidase, subunit II
112	 63.81	0	124535..125935	-	466	115360429	-	Bamb_5685	-	cytochrome bd ubiquinol oxidase, subunit I
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.