version 1.0
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472 1013 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 526 71.59 +1 660338..661150 + 270 115360843 - Bamb_6102 - alpha/beta hydrolase fold 527 68.46 0 661336..662505 + 389 115360844 ampC Bamb_6103 - beta-lactamase 528 70.23 0 662542..664590 - 682 115360845 - Bamb_6104 - squalene-hopene cyclase 529 73.27 +1 664748..665353 + 201 115360846 - Bamb_6105 - TetR family transcriptional regulator 530 63.14 0 665607..665861 + 84 115360847 - Bamb_6106 - hypothetical protein 531 65.18 0 666150..667091 - 313 115360848 - Bamb_6107 - dihydrodipicolinate synthetase 532 65.00 0 667683..669062 + 459 115360849 - Bamb_6108 - major facilitator transporter 533 57.14 -2 669413..670042 - 209 115360850 - Bamb_6109 - TetR family transcriptional regulator 534 61.89 0 670414..671544 + 376 115360851 - Bamb_6110 - alpha/beta hydrolase fold 535 61.74 -1 672108..673040 - 310 115360852 - Bamb_6111 - LysR family transcriptional regulator 536 66.09 0 673265..674131 + 288 115360853 - Bamb_6112 - NmrA family protein 537 60.57 -1 674225..675028 + 267 115360854 - Bamb_6113 - hypothetical protein 538 52.75 -2 675067..675756 + 229 115360855 - Bamb_6114 - hypothetical protein 539 56.48 -2 676025..676495 + 156 115360856 - Bamb_6115 - glycosyl hydrolase family 32 protein 540 62.09 0 676816..678411 + 531 115360857 - Bamb_6116 - levansucrase 541 52.17 -2 678793..679068 - 91 115360858 - Bamb_6117 - hypothetical protein 542 59.90 -1 679727..680554 - 275 115360859 - Bamb_6118 - short-chain dehydrogenase/reductase SDR 543 55.56 -2 680654..681031 + 125 115360860 - Bamb_6119 - MerR family transcriptional regulator 544 63.73 0 681288..681968 + 226 115360861 - Bamb_6120 - GntR family transcriptional regulator 545 68.15 0 682091..682426 - 111 115360862 - Bamb_6121 - hypothetical protein 546 67.33 0 682457..682756 - 99 115360863 - Bamb_6122 - hypothetical protein 547 66.26 0 683207..684193 + 328 115360864 - Bamb_6123 - TRAP dicarboxylate transporter, DctP subunit 548 69.08 0 684190..684768 + 192 115360865 - Bamb_6124 - tripartite ATP-independent periplasmic transporter DctQ 549 65.34 0 684773..686125 + 450 115360866 - Bamb_6125 - TRAP dicarboxylate transporter, DctM subunit 550 68.68 0 686210..687301 + 363 115360867 - Bamb_6126 - hypothetical protein 551 68.01 0 687386..688945 + 519 115360868 - Bamb_6127 - methyl-accepting chemotaxis sensory transducer 552 73.33 +1 689072..689326 - 84 115360869 - Bamb_6128 - hypothetical protein 553 72.48 +1 689358..690767 - 469 115360870 - Bamb_6129 - D-lactate dehydrogenase (cytochrome) 554 69.61 0 690770..691312 - 180 115360871 - Bamb_6130 - hypothetical protein 555 69.36 0 691367..692443 - 358 115360872 - Bamb_6131 - ABC-2 type transporter 556 71.99 +1 692436..693449 - 337 115360873 - Bamb_6132 - ABC transporter related 557 71.97 +1 693463..694536 - 357 115360874 - Bamb_6133 - taurine catabolism dioxygenase TauD/TfdA 558 70.44 0 694540..695202 - 220 115360875 - Bamb_6134 - methyltransferase type 11 559 75.22 +2 695240..696490 - 416 115360876 - Bamb_6135 - citrate synthase-like protein 560 67.32 0 696492..698339 - 615 115360877 - Bamb_6136 - acyl-CoA dehydrogenase domain-containing protein 561 74.91 +2 698339..699430 - 363 115360878 - Bamb_6137 - hypothetical protein 562 71.49 +1 699427..701001 - 524 115360879 - Bamb_6138 - AMP-dependent synthetase and ligase 563 73.38 +1 701021..702196 - 391 115360880 - Bamb_6139 - Orn/DAP/Arg decarboxylase 2 564 70.30 0 702186..703175 - 329 115360881 - Bamb_6140 - hypothetical protein 565 66.06 0 703177..704160 - 327 115360882 - Bamb_6141 - hypothetical protein 566 71.77 +1 704162..704788 - 208 115360883 - Bamb_6142 - hypothetical protein 567 74.52 +1 704790..705668 - 292 115360884 - Bamb_6143 - hypothetical protein 568 62.35 0 705676..705930 - 84 115360885 - Bamb_6144 - phosphopantetheine-binding 569 69.86 0 705990..707084 - 364 115360886 - Bamb_6145 - hypothetical protein 570 70.48 +1 707098..708435 - 445 115360887 - Bamb_6146 - hypothetical protein 571 68.50 0 708425..709186 - 253 115360888 - Bamb_6147 - hypothetical protein 572 69.79 0 709183..710400 - 405 115360889 - Bamb_6148 - hypothetical protein 573 71.25 +1 710372..711091 - 239 115360890 - Bamb_6149 - ABC transporter related 574 68.80 0 711088..712872 - 594 115360891 - Bamb_6150 - AMP-dependent synthetase and ligase 575 65.08 0 713253..714200 + 315 115360892 - Bamb_6151 - fatty acid desaturase 576 64.20 0 714261..715112 + 283 115360893 - Bamb_6152 - hypothetical protein 577 65.66 0 715731..716723 + 330 115360894 - Bamb_6153 - LysR family transcriptional regulator 578 69.94 0 716937..717761 + 274 115360895 - Bamb_6154 - alpha/beta hydrolase fold 579 68.98 0 717855..719450 - 531 115360896 - Bamb_6155 - general substrate transporter 580 72.52 +1 719518..720183 + 221 115360897 - Bamb_6156 - hypothetical protein 581 65.82 0 720134..721201 - 355 115360898 - Bamb_6157 - porin 582 67.52 0 721429..723423 - 664 115360899 - Bamb_6158 - acetyl-CoA synthetase 583 72.55 +1 723676..725529 - 617 115360900 - Bamb_6159 - RNA polymerase, sigma 28 subunit 584 69.18 0 725546..725863 - 105 115360901 - Bamb_6160 - high potential iron-sulfur protein 585 71.53 +1 725939..727213 - 424 115360902 - Bamb_6161 - cytochrome c, class I 586 66.32 0 727289..729016 - 575 115360903 - Bamb_6162 - Pyrrolo-quinoline quinone 587 73.33 +1 729789..730793 - 334 115360904 - Bamb_6163 - prolyl aminopeptidase 588 69.02 0 731241..733241 + 666 115360905 - Bamb_6164 - Fis family GAF modulated sigma54 specific transcriptional regulator 589 69.05 0 733673..734596 + 307 115360906 - Bamb_6165 - pyrroloquinoline quinone biosynthesis protein PqqB 590 67.36 0 734599..735318 + 239 115360907 - Bamb_6166 - pyrroloquinoline quinone biosynthesis protein PqqC 591 68.24 0 735342..735596 + 84 115360908 - Bamb_6167 - coenzyme PQQ synthesis D 592 66.76 0 735598..736722 + 374 115360909 - Bamb_6168 - pyrroloquinoline quinone biosynthesis protein PqqE 593 49.81 -2 737001..737261 + 86 115360910 - Bamb_6169 - hypothetical protein 594 64.05 0 737800..738870 + 356 115360911 - Bamb_6170 - AraC family transcriptional regulator 595 59.18 -1 739368..739661 - 97 115360912 - Bamb_6171 - hypothetical protein 596 67.13 0 739712..740788 + 358 115360913 - Bamb_6172 - undecaprenyl-phosphate galactose phosphotransferase 597 68.62 0 740976..742151 + 391 115360914 - Bamb_6173 - polysaccharide export protein 598 66.90 0 742148..742582 + 144 115360915 - Bamb_6174 - protein tyrosine phosphatase 599 66.58 0 742635..744872 + 745 115360916 - Bamb_6175 - exopolysaccharide transport protein family 600 66.26 0 744939..746171 + 410 115360917 - Bamb_6176 - hypothetical protein 601 65.75 0 746200..747399 + 399 115360918 - Bamb_6177 - capsule polysaccharide biosynthesis 602 66.29 0 747401..747931 + 176 115360919 - Bamb_6178 - hexapaptide repeat-containing transferase 603 67.37 0 747928..748920 + 330 115360920 - Bamb_6179 - hypothetical protein 604 67.04 0 748975..750057 + 360 115360921 - Bamb_6180 - glycosyl transferase, group 1 605 60.21 -1 750168..751220 - 350 115360922 - Bamb_6181 - IS605 family transposase OrfB 606 66.43 0 751340..752185 + 281 115360923 - Bamb_6182 - 2-dehydro-3-deoxyphosphooctonate aldolase 607 68.33 0 752203..752742 + 179 115360924 - Bamb_6183 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 608 68.53 0 752726..753529 + 267 115360925 - Bamb_6184 - 3-deoxy-D-manno-octulosonate cytidylyltransferase 609 68.15 0 753567..754442 + 291 115360926 - Bamb_6185 - KpsF/GutQ family protein 610 67.66 0 754505..755707 - 400 115360927 - Bamb_6186 - BNR repeat-containing glycosyl hydrolase 611 64.65 0 755704..756942 - 412 115360928 - Bamb_6187 - hypothetical protein 612 70.41 0 757153..757740 - 195 115360929 - Bamb_6188 - phosphoesterase, PA-phosphatase related 613 63.50 0 757766..758650 - 294 115360930 - Bamb_6189 - UTP-glucose-1-phosphate uridylyltransferase 614 60.26 -1 759009..759242 + 77 115360931 - Bamb_6190 - putative flagellar transcriptional activator FlhD 615 66.34 0 759361..759669 + 102 115360932 - Bamb_6191 - histone family protein nucleoid-structuring protein H-NS 616 69.36 0 759691..760767 - 358 115360933 - Bamb_6192 - DNA topoisomerase, type I, putative 617 65.11 0 761256..762218 + 320 115360934 - Bamb_6193 - periplasmic binding protein/LacI transcriptional regulator 618 69.57 0 762287..763801 + 504 115360935 - Bamb_6194 - ABC transporter related 619 71.18 +1 763798..764838 + 346 115360936 - Bamb_6195 - inner-membrane translocator 620 68.23 0 764835..765923 + 362 115360937 - Bamb_6196 - inner membrane ABC transporter permease protein YjfF 621 67.22 0 766011..768359 - 782 115360938 - Bamb_6197 - periplasmic sensor signal transduction histidine kinase 622 67.87 0 768337..769170 - 277 115360939 - Bamb_6198 - two component AraC family transcriptional regulator 623 55.31 -2 769218..769490 - 90 115360940 - Bamb_6199 - hypothetical protein 624 68.09 0 770163..770444 - 93 115360941 - Bamb_6200 - hypothetical protein 625 69.10 0 770635..774696 + 1353 115360942 - Bamb_6201 - YadA domain-containing protein 66.16 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0