IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
520	 68.84	0	654855..656279	+	474	115360837	-	Bamb_6096	-	betaine-aldehyde dehydrogenase
521	 71.86	+1	656333..657835	+	500	115360838	-	Bamb_6097	-	MlrC domain-containing protein
522	 68.69	0	657954..659141	+	395	115360839	-	Bamb_6098	-	hypothetical protein
523	 64.44	0	659246..659380	-	44	115360840	-	Bamb_6099	-	hypothetical protein
524	 73.25	+1	659403..659645	+	80	115360841	-	Bamb_6100	-	hypothetical protein
525	 71.71	+1	659794..660249	+	151	115360842	-	Bamb_6101	-	hypothetical protein
526	 71.59	+1	660338..661150	+	270	115360843	-	Bamb_6102	-	alpha/beta hydrolase fold
527	 68.46	0	661336..662505	+	389	115360844	ampC	Bamb_6103	-	beta-lactamase
528	 70.23	0	662542..664590	-	682	115360845	-	Bamb_6104	-	squalene-hopene cyclase
529	 73.27	+1	664748..665353	+	201	115360846	-	Bamb_6105	-	TetR family transcriptional regulator
530	 63.14	0	665607..665861	+	84	115360847	-	Bamb_6106	-	hypothetical protein
531	 65.18	0	666150..667091	-	313	115360848	-	Bamb_6107	-	dihydrodipicolinate synthetase
532	 65.00	0	667683..669062	+	459	115360849	-	Bamb_6108	-	major facilitator transporter
533	 57.14	-2	669413..670042	-	209	115360850	-	Bamb_6109	-	TetR family transcriptional regulator
534	 61.89	0	670414..671544	+	376	115360851	-	Bamb_6110	-	alpha/beta hydrolase fold
535	 61.74	-1	672108..673040	-	310	115360852	-	Bamb_6111	-	LysR family transcriptional regulator
536	 66.09	0	673265..674131	+	288	115360853	-	Bamb_6112	-	NmrA family protein
537	 60.57	-1	674225..675028	+	267	115360854	-	Bamb_6113	-	hypothetical protein
538	 52.75	-2	675067..675756	+	229	115360855	-	Bamb_6114	-	hypothetical protein
539	 56.48	-2	676025..676495	+	156	115360856	-	Bamb_6115	-	glycosyl hydrolase family 32 protein
540	 62.09	0	676816..678411	+	531	115360857	-	Bamb_6116	-	levansucrase
541	 52.17	-2	678793..679068	-	91	115360858	-	Bamb_6117	-	hypothetical protein
542	 59.90	-1	679727..680554	-	275	115360859	-	Bamb_6118	-	short-chain dehydrogenase/reductase SDR
543	 55.56	-2	680654..681031	+	125	115360860	-	Bamb_6119	-	MerR family transcriptional regulator
544	 63.73	0	681288..681968	+	226	115360861	-	Bamb_6120	-	GntR family transcriptional regulator
545	 68.15	0	682091..682426	-	111	115360862	-	Bamb_6121	-	hypothetical protein
546	 67.33	0	682457..682756	-	99	115360863	-	Bamb_6122	-	hypothetical protein
547	 66.26	0	683207..684193	+	328	115360864	-	Bamb_6123	-	TRAP dicarboxylate transporter, DctP subunit
548	 69.08	0	684190..684768	+	192	115360865	-	Bamb_6124	-	tripartite ATP-independent periplasmic transporter DctQ
549	 65.34	0	684773..686125	+	450	115360866	-	Bamb_6125	-	TRAP dicarboxylate transporter, DctM subunit
550	 68.68	0	686210..687301	+	363	115360867	-	Bamb_6126	-	hypothetical protein
551	 68.01	0	687386..688945	+	519	115360868	-	Bamb_6127	-	methyl-accepting chemotaxis sensory transducer
552	 73.33	+1	689072..689326	-	84	115360869	-	Bamb_6128	-	hypothetical protein
553	 72.48	+1	689358..690767	-	469	115360870	-	Bamb_6129	-	D-lactate dehydrogenase (cytochrome)
554	 69.61	0	690770..691312	-	180	115360871	-	Bamb_6130	-	hypothetical protein
555	 69.36	0	691367..692443	-	358	115360872	-	Bamb_6131	-	ABC-2 type transporter
556	 71.99	+1	692436..693449	-	337	115360873	-	Bamb_6132	-	ABC transporter related
557	 71.97	+1	693463..694536	-	357	115360874	-	Bamb_6133	-	taurine catabolism dioxygenase TauD/TfdA
558	 70.44	0	694540..695202	-	220	115360875	-	Bamb_6134	-	methyltransferase type 11
559	 75.22	+2	695240..696490	-	416	115360876	-	Bamb_6135	-	citrate synthase-like protein
560	 67.32	0	696492..698339	-	615	115360877	-	Bamb_6136	-	acyl-CoA dehydrogenase domain-containing protein
561	 74.91	+2	698339..699430	-	363	115360878	-	Bamb_6137	-	hypothetical protein
562	 71.49	+1	699427..701001	-	524	115360879	-	Bamb_6138	-	AMP-dependent synthetase and ligase
563	 73.38	+1	701021..702196	-	391	115360880	-	Bamb_6139	-	Orn/DAP/Arg decarboxylase 2
564	 70.30	0	702186..703175	-	329	115360881	-	Bamb_6140	-	hypothetical protein
565	 66.06	0	703177..704160	-	327	115360882	-	Bamb_6141	-	hypothetical protein
566	 71.77	+1	704162..704788	-	208	115360883	-	Bamb_6142	-	hypothetical protein
567	 74.52	+1	704790..705668	-	292	115360884	-	Bamb_6143	-	hypothetical protein
568	 62.35	0	705676..705930	-	84	115360885	-	Bamb_6144	-	phosphopantetheine-binding
569	 69.86	0	705990..707084	-	364	115360886	-	Bamb_6145	-	hypothetical protein
570	 70.48	+1	707098..708435	-	445	115360887	-	Bamb_6146	-	hypothetical protein
571	 68.50	0	708425..709186	-	253	115360888	-	Bamb_6147	-	hypothetical protein
572	 69.79	0	709183..710400	-	405	115360889	-	Bamb_6148	-	hypothetical protein
573	 71.25	+1	710372..711091	-	239	115360890	-	Bamb_6149	-	ABC transporter related
574	 68.80	0	711088..712872	-	594	115360891	-	Bamb_6150	-	AMP-dependent synthetase and ligase
575	 65.08	0	713253..714200	+	315	115360892	-	Bamb_6151	-	fatty acid desaturase
576	 64.20	0	714261..715112	+	283	115360893	-	Bamb_6152	-	hypothetical protein
577	 65.66	0	715731..716723	+	330	115360894	-	Bamb_6153	-	LysR family transcriptional regulator
578	 69.94	0	716937..717761	+	274	115360895	-	Bamb_6154	-	alpha/beta hydrolase fold
579	 68.98	0	717855..719450	-	531	115360896	-	Bamb_6155	-	general substrate transporter
580	 72.52	+1	719518..720183	+	221	115360897	-	Bamb_6156	-	hypothetical protein
581	 65.82	0	720134..721201	-	355	115360898	-	Bamb_6157	-	porin
582	 67.52	0	721429..723423	-	664	115360899	-	Bamb_6158	-	acetyl-CoA synthetase
583	 72.55	+1	723676..725529	-	617	115360900	-	Bamb_6159	-	RNA polymerase, sigma 28 subunit
584	 69.18	0	725546..725863	-	105	115360901	-	Bamb_6160	-	high potential iron-sulfur protein
585	 71.53	+1	725939..727213	-	424	115360902	-	Bamb_6161	-	cytochrome c, class I
586	 66.32	0	727289..729016	-	575	115360903	-	Bamb_6162	-	Pyrrolo-quinoline quinone
587	 73.33	+1	729789..730793	-	334	115360904	-	Bamb_6163	-	prolyl aminopeptidase
588	 69.02	0	731241..733241	+	666	115360905	-	Bamb_6164	-	Fis family GAF modulated sigma54 specific transcriptional regulator
589	 69.05	0	733673..734596	+	307	115360906	-	Bamb_6165	-	pyrroloquinoline quinone biosynthesis protein PqqB
590	 67.36	0	734599..735318	+	239	115360907	-	Bamb_6166	-	pyrroloquinoline quinone biosynthesis protein PqqC
591	 68.24	0	735342..735596	+	84	115360908	-	Bamb_6167	-	coenzyme PQQ synthesis D
592	 66.76	0	735598..736722	+	374	115360909	-	Bamb_6168	-	pyrroloquinoline quinone biosynthesis protein PqqE
593	 49.81	-2	737001..737261	+	86	115360910	-	Bamb_6169	-	hypothetical protein
594	 64.05	0	737800..738870	+	356	115360911	-	Bamb_6170	-	AraC family transcriptional regulator
595	 59.18	-1	739368..739661	-	97	115360912	-	Bamb_6171	-	hypothetical protein
596	 67.13	0	739712..740788	+	358	115360913	-	Bamb_6172	-	undecaprenyl-phosphate galactose phosphotransferase
597	 68.62	0	740976..742151	+	391	115360914	-	Bamb_6173	-	polysaccharide export protein
598	 66.90	0	742148..742582	+	144	115360915	-	Bamb_6174	-	protein tyrosine phosphatase
599	 66.58	0	742635..744872	+	745	115360916	-	Bamb_6175	-	exopolysaccharide transport protein family
600	 66.26	0	744939..746171	+	410	115360917	-	Bamb_6176	-	hypothetical protein
601	 65.75	0	746200..747399	+	399	115360918	-	Bamb_6177	-	capsule polysaccharide biosynthesis
602	 66.29	0	747401..747931	+	176	115360919	-	Bamb_6178	-	hexapaptide repeat-containing transferase
603	 67.37	0	747928..748920	+	330	115360920	-	Bamb_6179	-	hypothetical protein
604	 67.04	0	748975..750057	+	360	115360921	-	Bamb_6180	-	glycosyl transferase, group 1
605	 60.21	-1	750168..751220	-	350	115360922	-	Bamb_6181	-	IS605 family transposase OrfB
606	 66.43	0	751340..752185	+	281	115360923	-	Bamb_6182	-	2-dehydro-3-deoxyphosphooctonate aldolase
607	 68.33	0	752203..752742	+	179	115360924	-	Bamb_6183	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
608	 68.53	0	752726..753529	+	267	115360925	-	Bamb_6184	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
609	 68.15	0	753567..754442	+	291	115360926	-	Bamb_6185	-	KpsF/GutQ family protein
610	 67.66	0	754505..755707	-	400	115360927	-	Bamb_6186	-	BNR repeat-containing glycosyl hydrolase
611	 64.65	0	755704..756942	-	412	115360928	-	Bamb_6187	-	hypothetical protein
612	 70.41	0	757153..757740	-	195	115360929	-	Bamb_6188	-	phosphoesterase, PA-phosphatase related
613	 63.50	0	757766..758650	-	294	115360930	-	Bamb_6189	-	UTP-glucose-1-phosphate uridylyltransferase
614	 60.26	-1	759009..759242	+	77	115360931	-	Bamb_6190	-	putative flagellar transcriptional activator FlhD
615	 66.34	0	759361..759669	+	102	115360932	-	Bamb_6191	-	histone family protein nucleoid-structuring protein H-NS
616	 69.36	0	759691..760767	-	358	115360933	-	Bamb_6192	-	DNA topoisomerase, type I, putative
617	 65.11	0	761256..762218	+	320	115360934	-	Bamb_6193	-	periplasmic binding protein/LacI transcriptional regulator
618	 69.57	0	762287..763801	+	504	115360935	-	Bamb_6194	-	ABC transporter related
619	 71.18	+1	763798..764838	+	346	115360936	-	Bamb_6195	-	inner-membrane translocator
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.