IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
480	 69.24	0	615668..616522	+	284	115360797	-	Bamb_6056	-	thioesterase
481	 66.15	0	617001..618155	-	384	115360798	-	Bamb_6057	-	extracellular ligand-binding receptor
482	 70.23	0	618755..619651	-	298	115360799	-	Bamb_6058	-	hypothetical protein
483	 71.37	+1	619709..620728	+	339	115360800	-	Bamb_6059	-	LysR family transcriptional regulator
484	 66.67	0	620856..621515	+	219	115360801	-	Bamb_6060	-	hypothetical protein
485	 70.30	0	621553..622020	+	155	115360802	-	Bamb_6061	-	hypothetical protein
486	 65.20	0	622175..622651	+	158	115360803	-	Bamb_6062	-	hypothetical protein
487	 66.67	0	622728..623900	-	390	115360804	-	Bamb_6063	-	porin
488	 65.71	0	624062..624895	-	277	115360805	-	Bamb_6064	-	LuxR family transcriptional regulator
489	 64.97	0	625137..626258	+	373	115360806	-	Bamb_6065	-	extracellular solute-binding protein
490	 66.23	0	626270..627415	+	381	115360807	-	Bamb_6066	-	spermidine/putrescine ABC transporter ATPase subunit
491	 65.53	0	627423..628394	+	323	115360808	-	Bamb_6067	-	binding-protein-dependent transport systems inner membrane component
492	 67.74	0	628391..629323	+	310	115360809	-	Bamb_6068	-	binding-protein-dependent transport systems inner membrane component
493	 66.48	0	629345..630913	+	522	115360810	-	Bamb_6069	-	hypothetical protein
494	 68.06	0	630940..632232	+	430	115360811	-	Bamb_6070	-	FAD dependent oxidoreductase
495	 68.50	0	632308..632688	+	126	115360812	-	Bamb_6071	-	protein of unknown function DUF861, cupin_3
496	 72.67	+1	632735..634150	+	471	115360813	-	Bamb_6072	-	amidase
497	 70.22	0	634181..635671	+	496	115360814	-	Bamb_6073	-	betaine-aldehyde dehydrogenase
498	 72.31	+1	635959..636330	+	123	115360815	-	Bamb_6074	-	LrgA family protein
499	 70.34	0	636327..637061	+	244	115360816	-	Bamb_6075	-	LrgB family protein
500	 70.06	0	637295..637618	+	107	115360817	-	Bamb_6076	-	hypothetical protein
501	 67.00	0	637752..638354	-	200	115360818	-	Bamb_6077	-	flavoprotein WrbA
502	 66.39	0	638421..639146	-	241	115360819	-	Bamb_6078	-	pirin domain-containing protein
503	 68.59	0	639274..640158	+	294	115360820	-	Bamb_6079	-	LysR family transcriptional regulator
504	 66.18	0	640361..641386	+	341	115360821	-	Bamb_6080	-	hypothetical protein
505	 61.22	-1	641628..642086	+	152	115360822	-	Bamb_6081	-	hypothetical protein
506	 56.73	-2	642355..642837	+	160	115360823	-	Bamb_6082	-	hypothetical protein
507	 64.63	0	643157..643402	+	81	115360824	-	Bamb_6083	-	CopG/Arc/MetJ family transcriptional regulator
508	 64.33	0	643392..643691	+	99	115360825	-	Bamb_6084	-	plasmid stabilization system protein
509	 63.18	0	643723..643923	-	66	115360826	-	Bamb_6085	-	hypothetical protein
510	 63.77	0	644202..644615	+	137	115360827	-	Bamb_6086	-	DoxX family protein
511	 71.80	+1	644768..645721	+	317	115360828	-	Bamb_6087	-	dTDP-4-dehydrorhamnose reductase
512	 71.11	+1	646072..647511	+	479	115360829	-	Bamb_6088	-	hypothetical protein
513	 63.03	0	647880..648209	+	109	115360830	-	Bamb_6089	-	histone family protein nucleoid-structuring protein H-NS
514	 68.63	0	648402..648656	+	84	115360831	-	Bamb_6090	-	major facilitator transporter
515	 64.31	0	648840..649094	+	84	115360832	-	Bamb_6091	-	hypothetical protein
516	 68.73	0	649120..650379	+	419	115360833	-	Bamb_6092	-	saccharopine dehydrogenase
517	 68.67	0	650557..651753	-	398	115360834	-	Bamb_6093	-	AraC family transcriptional regulator
518	 67.74	0	651977..653368	+	463	115360835	-	Bamb_6094	-	amino acid permease-associated region
519	 68.45	0	653427..654824	+	465	115360836	-	Bamb_6095	-	hypothetical protein
520	 68.84	0	654855..656279	+	474	115360837	-	Bamb_6096	-	betaine-aldehyde dehydrogenase
521	 71.86	+1	656333..657835	+	500	115360838	-	Bamb_6097	-	MlrC domain-containing protein
522	 68.69	0	657954..659141	+	395	115360839	-	Bamb_6098	-	hypothetical protein
523	 64.44	0	659246..659380	-	44	115360840	-	Bamb_6099	-	hypothetical protein
524	 73.25	+1	659403..659645	+	80	115360841	-	Bamb_6100	-	hypothetical protein
525	 71.71	+1	659794..660249	+	151	115360842	-	Bamb_6101	-	hypothetical protein
526	 71.59	+1	660338..661150	+	270	115360843	-	Bamb_6102	-	alpha/beta hydrolase fold
527	 68.46	0	661336..662505	+	389	115360844	ampC	Bamb_6103	-	beta-lactamase
528	 70.23	0	662542..664590	-	682	115360845	-	Bamb_6104	-	squalene-hopene cyclase
529	 73.27	+1	664748..665353	+	201	115360846	-	Bamb_6105	-	TetR family transcriptional regulator
530	 63.14	0	665607..665861	+	84	115360847	-	Bamb_6106	-	hypothetical protein
531	 65.18	0	666150..667091	-	313	115360848	-	Bamb_6107	-	dihydrodipicolinate synthetase
532	 65.00	0	667683..669062	+	459	115360849	-	Bamb_6108	-	major facilitator transporter
533	 57.14	-2	669413..670042	-	209	115360850	-	Bamb_6109	-	TetR family transcriptional regulator
534	 61.89	0	670414..671544	+	376	115360851	-	Bamb_6110	-	alpha/beta hydrolase fold
535	 61.74	-1	672108..673040	-	310	115360852	-	Bamb_6111	-	LysR family transcriptional regulator
536	 66.09	0	673265..674131	+	288	115360853	-	Bamb_6112	-	NmrA family protein
537	 60.57	-1	674225..675028	+	267	115360854	-	Bamb_6113	-	hypothetical protein
538	 52.75	-2	675067..675756	+	229	115360855	-	Bamb_6114	-	hypothetical protein
539	 56.48	-2	676025..676495	+	156	115360856	-	Bamb_6115	-	glycosyl hydrolase family 32 protein
540	 62.09	0	676816..678411	+	531	115360857	-	Bamb_6116	-	levansucrase
541	 52.17	-2	678793..679068	-	91	115360858	-	Bamb_6117	-	hypothetical protein
542	 59.90	-1	679727..680554	-	275	115360859	-	Bamb_6118	-	short-chain dehydrogenase/reductase SDR
543	 55.56	-2	680654..681031	+	125	115360860	-	Bamb_6119	-	MerR family transcriptional regulator
544	 63.73	0	681288..681968	+	226	115360861	-	Bamb_6120	-	GntR family transcriptional regulator
545	 68.15	0	682091..682426	-	111	115360862	-	Bamb_6121	-	hypothetical protein
546	 67.33	0	682457..682756	-	99	115360863	-	Bamb_6122	-	hypothetical protein
547	 66.26	0	683207..684193	+	328	115360864	-	Bamb_6123	-	TRAP dicarboxylate transporter, DctP subunit
548	 69.08	0	684190..684768	+	192	115360865	-	Bamb_6124	-	tripartite ATP-independent periplasmic transporter DctQ
549	 65.34	0	684773..686125	+	450	115360866	-	Bamb_6125	-	TRAP dicarboxylate transporter, DctM subunit
550	 68.68	0	686210..687301	+	363	115360867	-	Bamb_6126	-	hypothetical protein
551	 68.01	0	687386..688945	+	519	115360868	-	Bamb_6127	-	methyl-accepting chemotaxis sensory transducer
552	 73.33	+1	689072..689326	-	84	115360869	-	Bamb_6128	-	hypothetical protein
553	 72.48	+1	689358..690767	-	469	115360870	-	Bamb_6129	-	D-lactate dehydrogenase (cytochrome)
554	 69.61	0	690770..691312	-	180	115360871	-	Bamb_6130	-	hypothetical protein
555	 69.36	0	691367..692443	-	358	115360872	-	Bamb_6131	-	ABC-2 type transporter
556	 71.99	+1	692436..693449	-	337	115360873	-	Bamb_6132	-	ABC transporter related
557	 71.97	+1	693463..694536	-	357	115360874	-	Bamb_6133	-	taurine catabolism dioxygenase TauD/TfdA
558	 70.44	0	694540..695202	-	220	115360875	-	Bamb_6134	-	methyltransferase type 11
559	 75.22	+2	695240..696490	-	416	115360876	-	Bamb_6135	-	citrate synthase-like protein
560	 67.32	0	696492..698339	-	615	115360877	-	Bamb_6136	-	acyl-CoA dehydrogenase domain-containing protein
561	 74.91	+2	698339..699430	-	363	115360878	-	Bamb_6137	-	hypothetical protein
562	 71.49	+1	699427..701001	-	524	115360879	-	Bamb_6138	-	AMP-dependent synthetase and ligase
563	 73.38	+1	701021..702196	-	391	115360880	-	Bamb_6139	-	Orn/DAP/Arg decarboxylase 2
564	 70.30	0	702186..703175	-	329	115360881	-	Bamb_6140	-	hypothetical protein
565	 66.06	0	703177..704160	-	327	115360882	-	Bamb_6141	-	hypothetical protein
566	 71.77	+1	704162..704788	-	208	115360883	-	Bamb_6142	-	hypothetical protein
567	 74.52	+1	704790..705668	-	292	115360884	-	Bamb_6143	-	hypothetical protein
568	 62.35	0	705676..705930	-	84	115360885	-	Bamb_6144	-	phosphopantetheine-binding
569	 69.86	0	705990..707084	-	364	115360886	-	Bamb_6145	-	hypothetical protein
570	 70.48	+1	707098..708435	-	445	115360887	-	Bamb_6146	-	hypothetical protein
571	 68.50	0	708425..709186	-	253	115360888	-	Bamb_6147	-	hypothetical protein
572	 69.79	0	709183..710400	-	405	115360889	-	Bamb_6148	-	hypothetical protein
573	 71.25	+1	710372..711091	-	239	115360890	-	Bamb_6149	-	ABC transporter related
574	 68.80	0	711088..712872	-	594	115360891	-	Bamb_6150	-	AMP-dependent synthetase and ligase
575	 65.08	0	713253..714200	+	315	115360892	-	Bamb_6151	-	fatty acid desaturase
576	 64.20	0	714261..715112	+	283	115360893	-	Bamb_6152	-	hypothetical protein
577	 65.66	0	715731..716723	+	330	115360894	-	Bamb_6153	-	LysR family transcriptional regulator
578	 69.94	0	716937..717761	+	274	115360895	-	Bamb_6154	-	alpha/beta hydrolase fold
579	 68.98	0	717855..719450	-	531	115360896	-	Bamb_6155	-	general substrate transporter
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.