IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
428	 64.44	0	555820..556944	-	374	115360745	-	Bamb_6004	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
429	 66.51	0	557056..557682	+	208	115360746	-	Bamb_6005	-	TetR family transcriptional regulator
430	 67.07	0	557984..558475	+	163	115360747	-	Bamb_6006	-	flavodoxin/nitric oxide synthase
431	 64.62	0	558653..559237	-	194	115360748	-	Bamb_6007	-	hypothetical protein
432	 68.42	0	559892..560746	+	284	115360749	-	Bamb_6008	-	ProQ activator of osmoprotectant transporter ProP
433	 67.56	0	561377..562495	+	372	115360750	-	Bamb_6009	-	hypothetical protein
434	 62.99	0	562595..563002	-	135	115360751	-	Bamb_6010	-	glyoxalase/bleomycin resistance protein/dioxygenase
435	 65.49	0	563106..563531	-	141	115360752	-	Bamb_6011	-	molybdenum-pterin binding
436	 71.20	+1	563714..565213	-	499	115360753	-	Bamb_6012	-	RND efflux system outer membrane lipoprotein
437	 69.68	0	565210..566205	-	331	115360754	-	Bamb_6013	-	RND family efflux transporter MFP subunit
438	 59.15	-1	566208..566420	-	70	115360755	-	Bamb_6014	-	hypothetical protein
439	 71.01	+1	566455..568596	-	713	115360756	-	Bamb_6015	-	fusaric acid resistance protein region
440	 71.25	+1	568593..569072	-	159	115360757	-	Bamb_6016	-	MarR family transcriptional regulator
441	 67.87	0	569482..570894	+	470	115360758	-	Bamb_6017	-	GntR family transcriptional regulator
442	 70.37	0	571000..571971	+	323	115360759	-	Bamb_6018	-	threonine dehydratase
443	 72.44	+1	571973..572977	+	334	115360760	-	Bamb_6019	-	ornithine cyclodeaminase
444	 67.66	0	572988..574196	+	402	115360761	-	Bamb_6020	-	peptidase M24
445	 69.40	0	574201..575226	+	341	115360762	-	Bamb_6021	-	succinylglutamate desuccinylase/aspartoacylase
446	 65.62	0	575231..575710	+	159	115360763	-	Bamb_6022	-	AsnC family transcriptional regulator
447	 69.06	0	575807..577312	+	501	115360764	-	Bamb_6023	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
448	 66.67	0	577333..578727	+	464	115360765	-	Bamb_6024	-	hypothetical protein
449	 63.67	0	578843..579775	-	310	115360766	-	Bamb_6025	-	beta-lactamase domain-containing protein
450	 62.86	0	579999..581651	-	550	115360767	-	Bamb_6026	-	AMP-dependent synthetase and ligase
451	 61.83	-1	581666..582430	-	254	115360768	-	Bamb_6027	-	nitroreductase
452	 61.44	-1	582510..583868	-	452	115360769	-	Bamb_6028	-	major facilitator transporter
453	 61.16	-1	584257..585945	-	562	115360770	-	Bamb_6029	-	tannase and feruloyl esterase
454	 61.90	0	586423..587451	-	342	115360771	-	Bamb_6030	-	AraC family transcriptional regulator
455	 68.54	0	587714..589099	-	461	115360772	-	Bamb_6031	-	general substrate transporter
456	 73.41	+1	589281..590999	-	572	115360773	-	Bamb_6032	-	Glycerone kinase
457	 68.88	0	591423..592553	-	376	115360774	-	Bamb_6033	-	sigma-54 dependent trancsriptional regulator
458	 69.16	0	593048..593608	+	186	115360775	-	Bamb_6034	-	FMN reductase
459	 64.86	0	593638..594741	+	367	115360776	-	Bamb_6035	-	luciferase family protein
460	 65.94	0	594904..595593	-	229	115360777	-	Bamb_6036	-	lysine exporter protein LysE/YggA
461	 68.78	0	595663..596514	+	283	115360778	-	Bamb_6037	-	LysR family transcriptional regulator
462	 66.16	0	596520..597512	-	330	115360779	-	Bamb_6038	-	LysR family transcriptional regulator
463	 68.80	0	597564..600617	+	1017	115360780	-	Bamb_6039	-	FAD linked oxidase domain-containing protein
464	 59.83	-1	600811..601497	-	228	115360781	-	Bamb_6040	-	LuxR family transcriptional regulator
465	 67.67	0	602089..602688	-	199	115360782	-	Bamb_6041	-	lysine exporter protein LysE/YggA
466	 66.12	0	602844..603752	+	302	115360783	-	Bamb_6042	-	LysR family transcriptional regulator
467	 66.75	0	603970..605214	+	414	115360784	-	Bamb_6043	-	sodium/hydrogen exchanger
468	 65.59	0	605279..606481	-	400	115360785	-	Bamb_6044	-	aminotransferase, class I and II
469	 64.48	0	606613..607434	-	273	115360786	-	Bamb_6045	-	hypothetical protein
470	 68.19	0	607459..608508	-	349	115360787	-	Bamb_6046	-	succinylglutamate desuccinylase/aspartoacylase
471	 64.36	0	608508..609329	-	273	115360788	-	Bamb_6047	-	hypothetical protein
472	 65.54	0	609377..609643	-	88	115360789	-	Bamb_6048	-	phosphopantetheine-binding
473	 63.11	0	609716..610642	-	308	115360790	-	Bamb_6049	-	chlorinating enzyme
474	 63.86	0	610721..610969	-	82	115360791	-	Bamb_6050	-	acyl carrier protein
475	 68.26	0	610986..612488	-	500	115360792	-	Bamb_6051	-	amino acid adenylation domain-containing protein
476	 64.69	0	612485..613345	-	286	115360793	-	Bamb_6052	-	alpha/beta hydrolase fold
477	 63.04	0	613425..614030	-	201	115360794	-	Bamb_6053	-	autoinducer synthesis protein
478	 62.05	0	614095..614592	-	165	115360795	-	Bamb_6054	-	hypothetical protein
479	 66.80	0	614917..615651	+	244	115360796	-	Bamb_6055	-	hypothetical protein
480	 69.24	0	615668..616522	+	284	115360797	-	Bamb_6056	-	thioesterase
481	 66.15	0	617001..618155	-	384	115360798	-	Bamb_6057	-	extracellular ligand-binding receptor
482	 70.23	0	618755..619651	-	298	115360799	-	Bamb_6058	-	hypothetical protein
483	 71.37	+1	619709..620728	+	339	115360800	-	Bamb_6059	-	LysR family transcriptional regulator
484	 66.67	0	620856..621515	+	219	115360801	-	Bamb_6060	-	hypothetical protein
485	 70.30	0	621553..622020	+	155	115360802	-	Bamb_6061	-	hypothetical protein
486	 65.20	0	622175..622651	+	158	115360803	-	Bamb_6062	-	hypothetical protein
487	 66.67	0	622728..623900	-	390	115360804	-	Bamb_6063	-	porin
488	 65.71	0	624062..624895	-	277	115360805	-	Bamb_6064	-	LuxR family transcriptional regulator
489	 64.97	0	625137..626258	+	373	115360806	-	Bamb_6065	-	extracellular solute-binding protein
490	 66.23	0	626270..627415	+	381	115360807	-	Bamb_6066	-	spermidine/putrescine ABC transporter ATPase subunit
491	 65.53	0	627423..628394	+	323	115360808	-	Bamb_6067	-	binding-protein-dependent transport systems inner membrane component
492	 67.74	0	628391..629323	+	310	115360809	-	Bamb_6068	-	binding-protein-dependent transport systems inner membrane component
493	 66.48	0	629345..630913	+	522	115360810	-	Bamb_6069	-	hypothetical protein
494	 68.06	0	630940..632232	+	430	115360811	-	Bamb_6070	-	FAD dependent oxidoreductase
495	 68.50	0	632308..632688	+	126	115360812	-	Bamb_6071	-	protein of unknown function DUF861, cupin_3
496	 72.67	+1	632735..634150	+	471	115360813	-	Bamb_6072	-	amidase
497	 70.22	0	634181..635671	+	496	115360814	-	Bamb_6073	-	betaine-aldehyde dehydrogenase
498	 72.31	+1	635959..636330	+	123	115360815	-	Bamb_6074	-	LrgA family protein
499	 70.34	0	636327..637061	+	244	115360816	-	Bamb_6075	-	LrgB family protein
500	 70.06	0	637295..637618	+	107	115360817	-	Bamb_6076	-	hypothetical protein
501	 67.00	0	637752..638354	-	200	115360818	-	Bamb_6077	-	flavoprotein WrbA
502	 66.39	0	638421..639146	-	241	115360819	-	Bamb_6078	-	pirin domain-containing protein
503	 68.59	0	639274..640158	+	294	115360820	-	Bamb_6079	-	LysR family transcriptional regulator
504	 66.18	0	640361..641386	+	341	115360821	-	Bamb_6080	-	hypothetical protein
505	 61.22	-1	641628..642086	+	152	115360822	-	Bamb_6081	-	hypothetical protein
506	 56.73	-2	642355..642837	+	160	115360823	-	Bamb_6082	-	hypothetical protein
507	 64.63	0	643157..643402	+	81	115360824	-	Bamb_6083	-	CopG/Arc/MetJ family transcriptional regulator
508	 64.33	0	643392..643691	+	99	115360825	-	Bamb_6084	-	plasmid stabilization system protein
509	 63.18	0	643723..643923	-	66	115360826	-	Bamb_6085	-	hypothetical protein
510	 63.77	0	644202..644615	+	137	115360827	-	Bamb_6086	-	DoxX family protein
511	 71.80	+1	644768..645721	+	317	115360828	-	Bamb_6087	-	dTDP-4-dehydrorhamnose reductase
512	 71.11	+1	646072..647511	+	479	115360829	-	Bamb_6088	-	hypothetical protein
513	 63.03	0	647880..648209	+	109	115360830	-	Bamb_6089	-	histone family protein nucleoid-structuring protein H-NS
514	 68.63	0	648402..648656	+	84	115360831	-	Bamb_6090	-	major facilitator transporter
515	 64.31	0	648840..649094	+	84	115360832	-	Bamb_6091	-	hypothetical protein
516	 68.73	0	649120..650379	+	419	115360833	-	Bamb_6092	-	saccharopine dehydrogenase
517	 68.67	0	650557..651753	-	398	115360834	-	Bamb_6093	-	AraC family transcriptional regulator
518	 67.74	0	651977..653368	+	463	115360835	-	Bamb_6094	-	amino acid permease-associated region
519	 68.45	0	653427..654824	+	465	115360836	-	Bamb_6095	-	hypothetical protein
520	 68.84	0	654855..656279	+	474	115360837	-	Bamb_6096	-	betaine-aldehyde dehydrogenase
521	 71.86	+1	656333..657835	+	500	115360838	-	Bamb_6097	-	MlrC domain-containing protein
522	 68.69	0	657954..659141	+	395	115360839	-	Bamb_6098	-	hypothetical protein
523	 64.44	0	659246..659380	-	44	115360840	-	Bamb_6099	-	hypothetical protein
524	 73.25	+1	659403..659645	+	80	115360841	-	Bamb_6100	-	hypothetical protein
525	 71.71	+1	659794..660249	+	151	115360842	-	Bamb_6101	-	hypothetical protein
526	 71.59	+1	660338..661150	+	270	115360843	-	Bamb_6102	-	alpha/beta hydrolase fold
527	 68.46	0	661336..662505	+	389	115360844	ampC	Bamb_6103	-	beta-lactamase
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.