IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
358	 65.72	0	463603..464973	-	456	115360675	-	Bamb_5933	-	MATE efflux family protein
359	 65.64	0	465410..465994	+	194	115360676	-	Bamb_5934	-	hypothetical protein
360	 68.93	0	466133..466750	+	205	115360677	-	Bamb_5935	-	hypothetical protein
361	 66.13	0	467040..468332	-	430	115360678	-	Bamb_5936	-	6-aminohexanoate-dimer hydrolase
362	 61.96	0	468639..469700	+	353	115360679	-	Bamb_5937	-	porin
363	 66.67	0	469745..470119	+	124	115360680	-	Bamb_5938	-	transport-associated
364	 64.35	0	470160..472187	-	675	115360681	-	Bamb_5939	-	beta-lactamase domain-containing protein
365	 67.90	0	472165..473466	-	433	115360682	-	Bamb_5940	-	major facilitator transporter
366	 64.81	0	473549..474733	-	394	115360683	-	Bamb_5941	-	acyl-CoA dehydrogenase domain-containing protein
367	 66.67	0	474743..476293	-	516	115360684	-	Bamb_5942	-	AMP-dependent synthetase and ligase
368	 66.12	0	476387..477304	+	305	115360685	-	Bamb_5943	-	LysR family transcriptional regulator
369	 64.21	0	477601..479838	-	745	115360686	-	Bamb_5944	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
370	 63.84	0	480206..480877	+	223	115360687	-	Bamb_5945	-	carbonate dehydratase
371	 61.78	-1	480939..481409	+	156	115360688	-	Bamb_5946	-	cyanate hydratase
372	 62.25	0	481492..482034	+	180	115360689	-	Bamb_5947	-	hypothetical protein
373	 62.79	0	482255..482512	+	85	115360690	-	Bamb_5948	-	hypothetical protein
374	 60.81	-1	482745..483632	-	295	115360691	-	Bamb_5949	-	DNA-binding transcriptional regulator CynR
375	 56.40	-2	483695..484327	+	210	115360692	-	Bamb_5950	-	hypothetical protein
376	 61.25	-1	484545..485024	-	159	115360693	-	Bamb_5951	-	hypothetical protein
377	 61.04	-1	485151..485399	-	82	115360694	-	Bamb_5952	-	hypothetical protein
378	 58.84	-1	485564..486151	+	195	115360695	-	Bamb_5953	-	TetR family transcriptional regulator
379	 67.05	0	486707..487741	-	344	115360696	-	Bamb_5954	-	alpha/beta hydrolase domain-containing protein
380	 65.73	0	487809..488234	-	141	115360697	-	Bamb_5955	-	OsmC family protein
381	 62.08	0	488460..489026	-	188	115360698	-	Bamb_5956	-	TetR family transcriptional regulator
382	 66.03	0	489446..491494	-	682	115360699	-	Bamb_5957	-	putative lipoprotein
383	 73.26	+1	492867..493382	+	171	115360700	-	Bamb_5959	-	methionine-R-sulfoxide reductase
384	 72.63	+1	493418..495295	+	625	115360701	-	Bamb_5960	-	cytochrome c biogenesis protein, transmembrane region
385	 68.42	0	495348..496088	+	246	115360702	-	Bamb_5961	-	methionine sulfoxide reductase A
386	 67.91	0	496307..497428	+	373	115360703	-	Bamb_5962	-	Rieske (2Fe-2S) domain-containing protein
387	 69.00	0	497490..498947	-	485	115360704	-	Bamb_5963	-	dihydropyrimidinase
388	 67.53	0	498994..500502	-	502	115360705	-	Bamb_5964	-	NCS1 nucleoside transporter
389	 66.97	0	500602..501909	-	435	115360706	-	Bamb_5965	-	dihydropyrimidine dehydrogenase
390	 70.85	+1	501982..503319	-	445	115360707	-	Bamb_5966	-	putative oxidoreductase
391	 67.60	0	503449..504729	-	426	115360708	-	Bamb_5967	-	allantoate amidohydrolase
392	 66.96	0	505093..505785	+	230	115360709	-	Bamb_5968	-	TetR family transcriptional regulator
393	 68.77	0	505901..507091	-	396	115360710	-	Bamb_5969	-	acetyl-CoA acetyltransferases
394	 68.62	0	507128..507895	-	255	115360711	-	Bamb_5970	-	short-chain dehydrogenase/reductase SDR
395	 68.16	0	507916..509589	-	557	115360712	-	Bamb_5971	-	AMP-dependent synthetase and ligase
396	 69.45	0	509727..510731	+	334	115360713	-	Bamb_5972	-	AraC family transcriptional regulator
397	 59.12	-1	510953..511111	+	52	115360714	-	Bamb_5973	-	hypothetical protein
398	 60.22	-1	511213..511584	+	123	115360715	-	Bamb_5974	-	hypothetical protein
399	 62.79	0	517772..518209	+	145	115360716	-	Bamb_5975	-	hypothetical protein
400	 67.54	0	518376..519059	-	227	115360717	-	Bamb_5976	-	hypothetical protein
401	 64.95	0	519069..519593	-	174	115360718	-	Bamb_5977	-	metal dependent phosphohydrolase
402	 71.16	+1	519715..523185	-	1156	115360719	-	Bamb_5978	-	hypothetical protein
403	 66.75	0	523189..524439	-	416	115360720	-	Bamb_5979	-	metallophosphoesterase
404	 72.22	+1	524962..525519	-	185	115360721	-	Bamb_5980	-	late embryogenesis abundant protein
405	 65.01	0	525766..526188	-	140	115360722	-	Bamb_5981	-	hypothetical protein
406	 68.28	0	526283..528271	-	662	115360723	-	Bamb_5982	-	gamma-glutamyltransferase
407	 67.02	0	528857..529138	-	93	115360724	-	Bamb_5983	-	hypothetical protein
408	 66.95	0	529407..532637	+	1076	115360725	-	Bamb_5984	-	acriflavin resistance protein
409	 71.56	+1	532687..534054	+	455	115360726	-	Bamb_5985	-	RND family efflux transporter MFP subunit
410	 69.54	0	534085..535578	+	497	115360727	-	Bamb_5986	-	RND efflux system outer membrane lipoprotein
411	 69.91	0	535559..537040	-	493	115360728	-	Bamb_5987	-	heavy metal sensor signal transduction histidine kinase
412	 64.16	0	537037..537714	-	225	115360729	-	Bamb_5988	-	two component heavy metal response transcriptional regulator
413	 65.21	0	538060..538539	-	159	115360730	-	Bamb_5989	-	hypothetical protein
414	 68.64	0	538536..538991	-	151	115360731	-	Bamb_5990	-	hypothetical protein
415	 61.68	-1	539297..539938	-	213	115360732	-	Bamb_5991	-	metal dependent phosphohydrolase
416	 67.43	0	540082..541128	+	348	115360733	-	Bamb_5992	-	AraC family transcriptional regulator
417	 65.71	0	541587..541898	+	103	115360734	-	Bamb_5993	-	hypothetical protein
418	 64.85	0	542210..542923	+	237	115360735	-	Bamb_5994	-	carboxymethylenebutenolidase
419	 68.93	0	543030..544001	-	323	115360736	-	Bamb_5995	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
420	 67.41	0	544274..545215	-	313	115360737	-	Bamb_5996	-	LysR family transcriptional regulator
421	 69.46	0	545452..546741	-	429	115360738	-	Bamb_5997	-	adenylosuccinate synthase
422	 68.55	0	546883..547785	+	300	115360739	-	Bamb_5998	-	LysR family transcriptional regulator
423	 64.22	0	548002..548328	-	108	115360740	-	Bamb_5999	-	hypothetical protein
424	 60.82	-1	550797..552113	+	438	115360741	-	Bamb_6000	-	hypothetical protein
425	 64.15	0	552206..553237	-	343	115360742	-	Bamb_6001	-	parB-like partition proteins
426	 57.47	-2	553230..553925	-	231	115360743	-	Bamb_6002	-	cobyrinic acid a,c-diamide synthase
427	 61.58	-1	554315..554707	-	130	115360744	-	Bamb_6003	-	hypothetical protein
428	 64.44	0	555820..556944	-	374	115360745	-	Bamb_6004	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
429	 66.51	0	557056..557682	+	208	115360746	-	Bamb_6005	-	TetR family transcriptional regulator
430	 67.07	0	557984..558475	+	163	115360747	-	Bamb_6006	-	flavodoxin/nitric oxide synthase
431	 64.62	0	558653..559237	-	194	115360748	-	Bamb_6007	-	hypothetical protein
432	 68.42	0	559892..560746	+	284	115360749	-	Bamb_6008	-	ProQ activator of osmoprotectant transporter ProP
433	 67.56	0	561377..562495	+	372	115360750	-	Bamb_6009	-	hypothetical protein
434	 62.99	0	562595..563002	-	135	115360751	-	Bamb_6010	-	glyoxalase/bleomycin resistance protein/dioxygenase
435	 65.49	0	563106..563531	-	141	115360752	-	Bamb_6011	-	molybdenum-pterin binding
436	 71.20	+1	563714..565213	-	499	115360753	-	Bamb_6012	-	RND efflux system outer membrane lipoprotein
437	 69.68	0	565210..566205	-	331	115360754	-	Bamb_6013	-	RND family efflux transporter MFP subunit
438	 59.15	-1	566208..566420	-	70	115360755	-	Bamb_6014	-	hypothetical protein
439	 71.01	+1	566455..568596	-	713	115360756	-	Bamb_6015	-	fusaric acid resistance protein region
440	 71.25	+1	568593..569072	-	159	115360757	-	Bamb_6016	-	MarR family transcriptional regulator
441	 67.87	0	569482..570894	+	470	115360758	-	Bamb_6017	-	GntR family transcriptional regulator
442	 70.37	0	571000..571971	+	323	115360759	-	Bamb_6018	-	threonine dehydratase
443	 72.44	+1	571973..572977	+	334	115360760	-	Bamb_6019	-	ornithine cyclodeaminase
444	 67.66	0	572988..574196	+	402	115360761	-	Bamb_6020	-	peptidase M24
445	 69.40	0	574201..575226	+	341	115360762	-	Bamb_6021	-	succinylglutamate desuccinylase/aspartoacylase
446	 65.62	0	575231..575710	+	159	115360763	-	Bamb_6022	-	AsnC family transcriptional regulator
447	 69.06	0	575807..577312	+	501	115360764	-	Bamb_6023	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
448	 66.67	0	577333..578727	+	464	115360765	-	Bamb_6024	-	hypothetical protein
449	 63.67	0	578843..579775	-	310	115360766	-	Bamb_6025	-	beta-lactamase domain-containing protein
450	 62.86	0	579999..581651	-	550	115360767	-	Bamb_6026	-	AMP-dependent synthetase and ligase
451	 61.83	-1	581666..582430	-	254	115360768	-	Bamb_6027	-	nitroreductase
452	 61.44	-1	582510..583868	-	452	115360769	-	Bamb_6028	-	major facilitator transporter
453	 61.16	-1	584257..585945	-	562	115360770	-	Bamb_6029	-	tannase and feruloyl esterase
454	 61.90	0	586423..587451	-	342	115360771	-	Bamb_6030	-	AraC family transcriptional regulator
455	 68.54	0	587714..589099	-	461	115360772	-	Bamb_6031	-	general substrate transporter
456	 73.41	+1	589281..590999	-	572	115360773	-	Bamb_6032	-	Glycerone kinase
457	 68.88	0	591423..592553	-	376	115360774	-	Bamb_6033	-	sigma-54 dependent trancsriptional regulator
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.