IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
302	 64.62	0	352658..353734	-	358	115360619	-	Bamb_5876	-	type II secretion system protein
303	 67.92	0	353724..355244	-	506	115360620	-	Bamb_5877	-	type II secretion system protein E
304	 70.07	0	355522..356109	-	195	115360621	-	Bamb_5878	-	hypothetical protein
305	 69.63	0	356099..357415	-	438	115360622	-	Bamb_5879	-	pilO; putative type IV pilus biosynthesis protein
306	 67.19	0	357441..359174	-	577	115360623	-	Bamb_5880	-	type IVB pilus formation outer membrane protein
307	 72.48	+1	359174..360412	-	412	115360624	-	Bamb_5881	-	hypothetical protein
308	 66.95	0	361210..362643	+	477	115360625	-	Bamb_5882	-	AraC family transcriptional regulator
309	 63.68	0	362818..363285	+	155	115360626	-	Bamb_5883	-	lytic transglycosylase, catalytic
310	 63.86	0	363494..364027	-	177	115360627	-	Bamb_5884	-	hypothetical protein
311	 67.57	0	364491..366803	+	770	115360628	-	Bamb_5885	-	hypothetical protein
312	 64.59	0	367059..367877	+	272	115360629	-	Bamb_5886	-	hypothetical protein
313	 55.30	-2	368012..368143	+	43	115360630	-	Bamb_5887	-	bacteriophage/transposase fusion protein
314	 63.89	0	368302..368661	-	119	115360631	-	Bamb_5888	-	hypothetical protein
315	 68.95	0	368681..368986	-	101	115360632	-	Bamb_5889	-	hypothetical protein
316	 67.18	0	369220..370989	+	589	115360633	-	Bamb_5890	-	hypothetical protein
317	 66.43	0	371158..372012	+	284	115360634	-	Bamb_5891	-	formyl transferase domain-containing protein
318	 69.47	0	372179..373321	-	380	115360635	-	Bamb_5892	-	hypothetical protein
319	 67.63	0	373474..374199	-	241	115360636	-	Bamb_5893	-	hypothetical protein
320	 65.57	0	375158..376072	-	304	115360637	-	Bamb_5895	-	LysR family transcriptional regulator
321	 66.16	0	376191..377378	+	395	115360638	-	Bamb_5896	-	amidohydrolase
322	 66.75	0	377439..378611	+	390	115360639	-	Bamb_5897	-	outer membrane protein (porin)-like protein
323	 67.43	0	378626..379927	+	433	115360640	-	Bamb_5898	-	major facilitator transporter
324	 70.68	+1	380472..381443	-	323	115360641	-	Bamb_5899	-	ferredoxin
325	 69.74	0	381466..382863	-	465	115360642	-	Bamb_5900	-	sodium/sulphate symporter
326	 66.67	0	382860..384086	-	408	115360643	-	Bamb_5901	-	Rieske (2Fe-2S) domain-containing protein
327	 69.70	0	384361..384921	+	186	115360644	-	Bamb_5902	-	Rossmann fold nucleotide-binding protein-like protein
328	 70.39	0	384979..386295	-	438	115360645	-	Bamb_5903	-	allantoate amidohydrolase
329	 71.47	+1	386295..387272	-	325	115360646	-	Bamb_5904	-	dihydroorotate dehydrogenase family protein
330	 73.24	+1	387265..388131	-	288	115360647	-	Bamb_5905	-	oxidoreductase FAD-binding subunit
331	 69.07	0	388171..389418	-	415	115360648	-	Bamb_5906	-	major facilitator transporter
332	 70.68	+1	389569..389892	-	107	115360649	-	Bamb_5907	-	hypothetical protein
333	 66.76	0	389997..391070	-	357	115360650	-	Bamb_5908	-	porin
334	 64.83	0	391183..392814	+	543	115360651	-	Bamb_5909	-	exodeoxyribonuclease V, beta subunit
335	 63.03	0	393560..394273	+	237	115360652	-	Bamb_5910	-	LuxR family transcriptional regulator
336	 64.08	0	394310..394657	+	115	115360653	-	Bamb_5911	-	LuxR family transcriptional regulator
337	 75.36	+2	394800..395627	+	275	115360654	-	Bamb_5912	-	xylose isomerase domain-containing protein
338	 75.63	+2	395624..396538	+	304	115360655	-	Bamb_5913	-	shikimate 5-dehydrogenase
339	 73.57	+1	396586..397599	-	337	115360656	-	Bamb_5914	-	alcohol dehydrogenase
340	 72.25	+1	397596..399134	-	512	115360657	-	Bamb_5915	-	condensation domain-containing protein
341	 71.50	+1	399149..400390	-	413	115360658	-	Bamb_5916	-	L-carnitine dehydratase/bile acid-inducible protein F
342	 75.42	+2	400483..401430	-	315	115360659	-	Bamb_5917	-	phosphopantetheine-binding
343	 73.09	+1	401424..402482	-	352	115360660	-	Bamb_5918	-	NADH:flavin oxidoreductase/NADH oxidase
344	 74.54	+1	402538..409929	-	2463	115360661	-	Bamb_5919	-	beta-ketoacyl synthase
345	 74.43	+1	409955..418882	-	2975	115360662	-	Bamb_5920	-	beta-ketoacyl synthase
346	 74.87	+2	418893..427850	-	2985	115360663	-	Bamb_5921	-	beta-ketoacyl synthase
347	 74.43	+1	427850..433915	-	2021	115360664	-	Bamb_5922	-	beta-ketoacyl synthase
348	 75.83	+2	433915..439152	-	1745	115360665	-	Bamb_5923	-	beta-ketoacyl synthase
349	 73.60	+1	439201..445806	-	2201	115360666	-	Bamb_5924	-	beta-ketoacyl synthase
350	 73.40	+1	445799..453733	-	2644	115360667	-	Bamb_5925	-	beta-ketoacyl synthase
351	 73.91	+1	453777..454577	-	266	115360668	-	Bamb_5926	-	thioesterase
352	 68.38	0	454673..455608	-	311	115360669	-	Bamb_5927	-	aspartyl/asparaginyl beta-hydroxylase
353	 64.79	0	455620..457167	-	515	115360670	-	Bamb_5928	-	FAD dependent oxidoreductase
354	 66.67	0	457722..458342	+	206	115360671	-	Bamb_5929	-	hypothetical protein
355	 68.01	0	458396..460180	-	594	115360672	-	Bamb_5930	-	carbamoyltransferase
356	 65.67	0	460248..460850	-	200	115360673	-	Bamb_5931	-	hypothetical protein
357	 69.94	0	461512..463527	-	671	115360674	-	Bamb_5932	-	quinate/shikimate dehydrogenase, putative
358	 65.72	0	463603..464973	-	456	115360675	-	Bamb_5933	-	MATE efflux family protein
359	 65.64	0	465410..465994	+	194	115360676	-	Bamb_5934	-	hypothetical protein
360	 68.93	0	466133..466750	+	205	115360677	-	Bamb_5935	-	hypothetical protein
361	 66.13	0	467040..468332	-	430	115360678	-	Bamb_5936	-	6-aminohexanoate-dimer hydrolase
362	 61.96	0	468639..469700	+	353	115360679	-	Bamb_5937	-	porin
363	 66.67	0	469745..470119	+	124	115360680	-	Bamb_5938	-	transport-associated
364	 64.35	0	470160..472187	-	675	115360681	-	Bamb_5939	-	beta-lactamase domain-containing protein
365	 67.90	0	472165..473466	-	433	115360682	-	Bamb_5940	-	major facilitator transporter
366	 64.81	0	473549..474733	-	394	115360683	-	Bamb_5941	-	acyl-CoA dehydrogenase domain-containing protein
367	 66.67	0	474743..476293	-	516	115360684	-	Bamb_5942	-	AMP-dependent synthetase and ligase
368	 66.12	0	476387..477304	+	305	115360685	-	Bamb_5943	-	LysR family transcriptional regulator
369	 64.21	0	477601..479838	-	745	115360686	-	Bamb_5944	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
370	 63.84	0	480206..480877	+	223	115360687	-	Bamb_5945	-	carbonate dehydratase
371	 61.78	-1	480939..481409	+	156	115360688	-	Bamb_5946	-	cyanate hydratase
372	 62.25	0	481492..482034	+	180	115360689	-	Bamb_5947	-	hypothetical protein
373	 62.79	0	482255..482512	+	85	115360690	-	Bamb_5948	-	hypothetical protein
374	 60.81	-1	482745..483632	-	295	115360691	-	Bamb_5949	-	DNA-binding transcriptional regulator CynR
375	 56.40	-2	483695..484327	+	210	115360692	-	Bamb_5950	-	hypothetical protein
376	 61.25	-1	484545..485024	-	159	115360693	-	Bamb_5951	-	hypothetical protein
377	 61.04	-1	485151..485399	-	82	115360694	-	Bamb_5952	-	hypothetical protein
378	 58.84	-1	485564..486151	+	195	115360695	-	Bamb_5953	-	TetR family transcriptional regulator
379	 67.05	0	486707..487741	-	344	115360696	-	Bamb_5954	-	alpha/beta hydrolase domain-containing protein
380	 65.73	0	487809..488234	-	141	115360697	-	Bamb_5955	-	OsmC family protein
381	 62.08	0	488460..489026	-	188	115360698	-	Bamb_5956	-	TetR family transcriptional regulator
382	 66.03	0	489446..491494	-	682	115360699	-	Bamb_5957	-	putative lipoprotein
383	 73.26	+1	492867..493382	+	171	115360700	-	Bamb_5959	-	methionine-R-sulfoxide reductase
384	 72.63	+1	493418..495295	+	625	115360701	-	Bamb_5960	-	cytochrome c biogenesis protein, transmembrane region
385	 68.42	0	495348..496088	+	246	115360702	-	Bamb_5961	-	methionine sulfoxide reductase A
386	 67.91	0	496307..497428	+	373	115360703	-	Bamb_5962	-	Rieske (2Fe-2S) domain-containing protein
387	 69.00	0	497490..498947	-	485	115360704	-	Bamb_5963	-	dihydropyrimidinase
388	 67.53	0	498994..500502	-	502	115360705	-	Bamb_5964	-	NCS1 nucleoside transporter
389	 66.97	0	500602..501909	-	435	115360706	-	Bamb_5965	-	dihydropyrimidine dehydrogenase
390	 70.85	+1	501982..503319	-	445	115360707	-	Bamb_5966	-	putative oxidoreductase
391	 67.60	0	503449..504729	-	426	115360708	-	Bamb_5967	-	allantoate amidohydrolase
392	 66.96	0	505093..505785	+	230	115360709	-	Bamb_5968	-	TetR family transcriptional regulator
393	 68.77	0	505901..507091	-	396	115360710	-	Bamb_5969	-	acetyl-CoA acetyltransferases
394	 68.62	0	507128..507895	-	255	115360711	-	Bamb_5970	-	short-chain dehydrogenase/reductase SDR
395	 68.16	0	507916..509589	-	557	115360712	-	Bamb_5971	-	AMP-dependent synthetase and ligase
396	 69.45	0	509727..510731	+	334	115360713	-	Bamb_5972	-	AraC family transcriptional regulator
397	 59.12	-1	510953..511111	+	52	115360714	-	Bamb_5973	-	hypothetical protein
398	 60.22	-1	511213..511584	+	123	115360715	-	Bamb_5974	-	hypothetical protein
399	 62.79	0	517772..518209	+	145	115360716	-	Bamb_5975	-	hypothetical protein
400	 67.54	0	518376..519059	-	227	115360717	-	Bamb_5976	-	hypothetical protein
401	 64.95	0	519069..519593	-	174	115360718	-	Bamb_5977	-	metal dependent phosphohydrolase
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.