version 1.0
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472 1013 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 278 71.83 +1 329162..330169 - 335 115360595 - Bamb_5852 - HrpE/YscL family type III secretion apparatus protein 279 71.67 +1 330163..330921 - 252 115360596 - Bamb_5853 - hypothetical protein 280 66.16 0 330974..331765 - 263 115360597 - Bamb_5854 - YscJ/HrcJ family type III secretion apparatus lipoprotein 281 64.41 0 331948..332346 - 132 115360598 - Bamb_5855 - hrpB2; type III secretion protein HrpB2 282 65.79 0 332375..332944 - 189 115360599 - Bamb_5856 - hypothetical protein 283 64.68 0 333337..334395 + 352 115360600 - Bamb_5857 - type III secretion system protein HrcU 284 66.72 0 334401..336377 + 658 115360601 - Bamb_5858 - HrcV family type III secretion protein 285 67.54 0 336394..337314 + 306 115360602 - Bamb_5859 - hypothetical protein 286 68.40 0 337466..338446 + 326 115360603 - Bamb_5860 - type III secretion system apparatus protein YscQ/HrcQ 287 61.34 -1 338433..339089 + 218 115360604 - Bamb_5861 - type III secretion system protein 288 65.15 0 339100..339363 + 87 115360605 - Bamb_5862 - HrpO family type III secretion protein 289 70.78 +1 339360..340574 + 404 115360606 - Bamb_5863 - hypothetical protein 290 68.88 0 340709..341749 + 346 115360607 - Bamb_5864 - sctD; secretion-associated protein 291 70.11 0 341773..342033 + 86 115360608 - Bamb_5865 - putative type III secretion protein 292 60.95 -1 342207..342416 + 69 115360609 - Bamb_5866 - hypothetical protein 293 60.31 -1 342540..342995 + 151 115360610 - Bamb_5867 - hypothetical protein 294 71.22 +1 343131..344558 - 475 115360611 - Bamb_5868 - type II/III secretion system family protein 295 65.39 0 344555..345340 - 261 115360612 - Bamb_5869 - two component transcriptional regulator 296 70.13 0 345429..346553 - 374 115360613 - Bamb_5870 - PAS/PAC sensor signal transduction histidine kinase 297 67.56 0 346678..348363 - 561 115360614 - Bamb_5871 - YscC/HrcC family type III secretion outer membrane protein 298 65.49 0 348560..349660 + 366 115360615 - Bamb_5872 - type II secretion system protein E 299 67.20 0 349767..351464 - 565 115360616 - Bamb_5873 - type IV prepilin 300 71.88 +1 351457..351936 - 159 115360617 - Bamb_5874 - pilM; PilM 301 64.65 0 351989..352483 - 164 115360618 - Bamb_5875 - putative type IV pilus biogenesis protein 302 64.62 0 352658..353734 - 358 115360619 - Bamb_5876 - type II secretion system protein 303 67.92 0 353724..355244 - 506 115360620 - Bamb_5877 - type II secretion system protein E 304 70.07 0 355522..356109 - 195 115360621 - Bamb_5878 - hypothetical protein 305 69.63 0 356099..357415 - 438 115360622 - Bamb_5879 - pilO; putative type IV pilus biosynthesis protein 306 67.19 0 357441..359174 - 577 115360623 - Bamb_5880 - type IVB pilus formation outer membrane protein 307 72.48 +1 359174..360412 - 412 115360624 - Bamb_5881 - hypothetical protein 308 66.95 0 361210..362643 + 477 115360625 - Bamb_5882 - AraC family transcriptional regulator 309 63.68 0 362818..363285 + 155 115360626 - Bamb_5883 - lytic transglycosylase, catalytic 310 63.86 0 363494..364027 - 177 115360627 - Bamb_5884 - hypothetical protein 311 67.57 0 364491..366803 + 770 115360628 - Bamb_5885 - hypothetical protein 312 64.59 0 367059..367877 + 272 115360629 - Bamb_5886 - hypothetical protein 313 55.30 -2 368012..368143 + 43 115360630 - Bamb_5887 - bacteriophage/transposase fusion protein 314 63.89 0 368302..368661 - 119 115360631 - Bamb_5888 - hypothetical protein 315 68.95 0 368681..368986 - 101 115360632 - Bamb_5889 - hypothetical protein 316 67.18 0 369220..370989 + 589 115360633 - Bamb_5890 - hypothetical protein 317 66.43 0 371158..372012 + 284 115360634 - Bamb_5891 - formyl transferase domain-containing protein 318 69.47 0 372179..373321 - 380 115360635 - Bamb_5892 - hypothetical protein 319 67.63 0 373474..374199 - 241 115360636 - Bamb_5893 - hypothetical protein 320 65.57 0 375158..376072 - 304 115360637 - Bamb_5895 - LysR family transcriptional regulator 321 66.16 0 376191..377378 + 395 115360638 - Bamb_5896 - amidohydrolase 322 66.75 0 377439..378611 + 390 115360639 - Bamb_5897 - outer membrane protein (porin)-like protein 323 67.43 0 378626..379927 + 433 115360640 - Bamb_5898 - major facilitator transporter 324 70.68 +1 380472..381443 - 323 115360641 - Bamb_5899 - ferredoxin 325 69.74 0 381466..382863 - 465 115360642 - Bamb_5900 - sodium/sulphate symporter 326 66.67 0 382860..384086 - 408 115360643 - Bamb_5901 - Rieske (2Fe-2S) domain-containing protein 327 69.70 0 384361..384921 + 186 115360644 - Bamb_5902 - Rossmann fold nucleotide-binding protein-like protein 328 70.39 0 384979..386295 - 438 115360645 - Bamb_5903 - allantoate amidohydrolase 329 71.47 +1 386295..387272 - 325 115360646 - Bamb_5904 - dihydroorotate dehydrogenase family protein 330 73.24 +1 387265..388131 - 288 115360647 - Bamb_5905 - oxidoreductase FAD-binding subunit 331 69.07 0 388171..389418 - 415 115360648 - Bamb_5906 - major facilitator transporter 332 70.68 +1 389569..389892 - 107 115360649 - Bamb_5907 - hypothetical protein 333 66.76 0 389997..391070 - 357 115360650 - Bamb_5908 - porin 334 64.83 0 391183..392814 + 543 115360651 - Bamb_5909 - exodeoxyribonuclease V, beta subunit 335 63.03 0 393560..394273 + 237 115360652 - Bamb_5910 - LuxR family transcriptional regulator 336 64.08 0 394310..394657 + 115 115360653 - Bamb_5911 - LuxR family transcriptional regulator 337 75.36 +2 394800..395627 + 275 115360654 - Bamb_5912 - xylose isomerase domain-containing protein 338 75.63 +2 395624..396538 + 304 115360655 - Bamb_5913 - shikimate 5-dehydrogenase 339 73.57 +1 396586..397599 - 337 115360656 - Bamb_5914 - alcohol dehydrogenase 340 72.25 +1 397596..399134 - 512 115360657 - Bamb_5915 - condensation domain-containing protein 341 71.50 +1 399149..400390 - 413 115360658 - Bamb_5916 - L-carnitine dehydratase/bile acid-inducible protein F 342 75.42 +2 400483..401430 - 315 115360659 - Bamb_5917 - phosphopantetheine-binding 343 73.09 +1 401424..402482 - 352 115360660 - Bamb_5918 - NADH:flavin oxidoreductase/NADH oxidase 344 74.54 +1 402538..409929 - 2463 115360661 - Bamb_5919 - beta-ketoacyl synthase 345 74.43 +1 409955..418882 - 2975 115360662 - Bamb_5920 - beta-ketoacyl synthase 346 74.87 +2 418893..427850 - 2985 115360663 - Bamb_5921 - beta-ketoacyl synthase 347 74.43 +1 427850..433915 - 2021 115360664 - Bamb_5922 - beta-ketoacyl synthase 348 75.83 +2 433915..439152 - 1745 115360665 - Bamb_5923 - beta-ketoacyl synthase 349 73.60 +1 439201..445806 - 2201 115360666 - Bamb_5924 - beta-ketoacyl synthase 350 73.40 +1 445799..453733 - 2644 115360667 - Bamb_5925 - beta-ketoacyl synthase 351 73.91 +1 453777..454577 - 266 115360668 - Bamb_5926 - thioesterase 352 68.38 0 454673..455608 - 311 115360669 - Bamb_5927 - aspartyl/asparaginyl beta-hydroxylase 353 64.79 0 455620..457167 - 515 115360670 - Bamb_5928 - FAD dependent oxidoreductase 354 66.67 0 457722..458342 + 206 115360671 - Bamb_5929 - hypothetical protein 355 68.01 0 458396..460180 - 594 115360672 - Bamb_5930 - carbamoyltransferase 356 65.67 0 460248..460850 - 200 115360673 - Bamb_5931 - hypothetical protein 357 69.94 0 461512..463527 - 671 115360674 - Bamb_5932 - quinate/shikimate dehydrogenase, putative 358 65.72 0 463603..464973 - 456 115360675 - Bamb_5933 - MATE efflux family protein 359 65.64 0 465410..465994 + 194 115360676 - Bamb_5934 - hypothetical protein 360 68.93 0 466133..466750 + 205 115360677 - Bamb_5935 - hypothetical protein 361 66.13 0 467040..468332 - 430 115360678 - Bamb_5936 - 6-aminohexanoate-dimer hydrolase 362 61.96 0 468639..469700 + 353 115360679 - Bamb_5937 - porin 363 66.67 0 469745..470119 + 124 115360680 - Bamb_5938 - transport-associated 364 64.35 0 470160..472187 - 675 115360681 - Bamb_5939 - beta-lactamase domain-containing protein 365 67.90 0 472165..473466 - 433 115360682 - Bamb_5940 - major facilitator transporter 366 64.81 0 473549..474733 - 394 115360683 - Bamb_5941 - acyl-CoA dehydrogenase domain-containing protein 367 66.67 0 474743..476293 - 516 115360684 - Bamb_5942 - AMP-dependent synthetase and ligase 368 66.12 0 476387..477304 + 305 115360685 - Bamb_5943 - LysR family transcriptional regulator 369 64.21 0 477601..479838 - 745 115360686 - Bamb_5944 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 370 63.84 0 480206..480877 + 223 115360687 - Bamb_5945 - carbonate dehydratase 371 61.78 -1 480939..481409 + 156 115360688 - Bamb_5946 - cyanate hydratase 372 62.25 0 481492..482034 + 180 115360689 - Bamb_5947 - hypothetical protein 373 62.79 0 482255..482512 + 85 115360690 - Bamb_5948 - hypothetical protein 374 60.81 -1 482745..483632 - 295 115360691 - Bamb_5949 - DNA-binding transcriptional regulator CynR 375 56.40 -2 483695..484327 + 210 115360692 - Bamb_5950 - hypothetical protein 376 61.25 -1 484545..485024 - 159 115360693 - Bamb_5951 - hypothetical protein 377 61.04 -1 485151..485399 - 82 115360694 - Bamb_5952 - hypothetical protein 66.16 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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