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Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472 1013 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 248 69.38 0 291105..292322 + 405 115360565 - Bamb_5822 - major facilitator transporter 249 69.72 0 292492..293604 + 370 115360566 - Bamb_5823 - NADH:flavin oxidoreductase/NADH oxidase 250 71.43 +1 293683..294354 - 223 115360567 - Bamb_5824 - metal-dependent phosphohydrolase 251 69.77 0 294429..296360 - 643 115360568 - Bamb_5825 - amidohydrolase 3 252 71.76 +1 296467..299313 - 948 115360569 - Bamb_5826 - transcriptional regulator 253 67.33 0 299705..300613 + 302 115360570 - Bamb_5827 - AraC family transcriptional regulator 254 67.47 0 300714..301703 - 329 115360571 - Bamb_5828 - beta-lactamase domain-containing protein 255 69.09 0 301898..302803 + 301 115360572 - Bamb_5829 - LysR family transcriptional regulator 256 67.28 0 302822..304297 - 491 115360573 - Bamb_5830 - hypothetical protein 257 66.04 0 304297..305256 - 319 115360574 - Bamb_5831 - hypothetical protein 258 68.33 0 305376..305915 - 179 115360575 - Bamb_5832 - hypothetical protein 259 63.62 0 306054..307103 - 349 115360576 - Bamb_5833 - patatin 260 66.87 0 307180..310635 - 1151 115360577 - Bamb_5834 - adenylate/guanylate cyclase 261 66.40 0 310724..311479 - 251 115360578 - Bamb_5835 - histidine utilization repressor 262 71.49 +1 311541..313034 - 497 115360579 - Bamb_5836 - phenylalanine/histidine ammonia-lyase 263 66.92 0 313042..313833 - 263 115360580 - Bamb_5837 - ABC transporter related 264 67.47 0 313862..314608 - 248 115360581 - Bamb_5838 - polar amino acid ABC transporter, inner membrane subunit 265 68.74 0 314621..315343 - 240 115360582 - Bamb_5839 - polar amino acid ABC transporter, inner membrane subunit 266 62.15 0 315436..316587 - 383 115360583 - Bamb_5840 - extracellular solute-binding protein 267 59.26 -1 316636..317094 - 152 115360584 - Bamb_5841 - pseudoazurin 268 63.12 0 317152..319377 - 741 115360585 - Bamb_5842 - catalase/peroxidase HPI 269 68.68 0 319651..320841 - 396 115360586 - Bamb_5843 - amidohydrolase 270 69.14 0 320921..322255 - 444 115360587 - Bamb_5844 - hypothetical protein 271 71.67 +1 322304..323821 - 505 115360588 - Bamb_5845 - betaine-aldehyde dehydrogenase 272 71.59 +1 323876..324748 - 290 115360589 - Bamb_5846 - 6-phosphogluconate dehydrogenase, NAD-binding 273 66.89 0 324892..325800 + 302 115360590 - Bamb_5847 - LysR family transcriptional regulator 274 68.97 0 325932..326321 - 129 115360591 - Bamb_5848 - hypothetical protein 275 63.07 0 326361..327167 - 268 115360592 - Bamb_5849 - type III secretion protein SpaR/YscT/HrcT 276 69.14 0 327219..327704 - 161 115360593 - Bamb_5850 - putative type III secretory pathway protein 277 69.04 0 327720..329111 - 463 115360594 - Bamb_5851 - type III secretion system ATPase 278 71.83 +1 329162..330169 - 335 115360595 - Bamb_5852 - HrpE/YscL family type III secretion apparatus protein 279 71.67 +1 330163..330921 - 252 115360596 - Bamb_5853 - hypothetical protein 280 66.16 0 330974..331765 - 263 115360597 - Bamb_5854 - YscJ/HrcJ family type III secretion apparatus lipoprotein 281 64.41 0 331948..332346 - 132 115360598 - Bamb_5855 - hrpB2; type III secretion protein HrpB2 282 65.79 0 332375..332944 - 189 115360599 - Bamb_5856 - hypothetical protein 283 64.68 0 333337..334395 + 352 115360600 - Bamb_5857 - type III secretion system protein HrcU 284 66.72 0 334401..336377 + 658 115360601 - Bamb_5858 - HrcV family type III secretion protein 285 67.54 0 336394..337314 + 306 115360602 - Bamb_5859 - hypothetical protein 286 68.40 0 337466..338446 + 326 115360603 - Bamb_5860 - type III secretion system apparatus protein YscQ/HrcQ 287 61.34 -1 338433..339089 + 218 115360604 - Bamb_5861 - type III secretion system protein 288 65.15 0 339100..339363 + 87 115360605 - Bamb_5862 - HrpO family type III secretion protein 289 70.78 +1 339360..340574 + 404 115360606 - Bamb_5863 - hypothetical protein 290 68.88 0 340709..341749 + 346 115360607 - Bamb_5864 - sctD; secretion-associated protein 291 70.11 0 341773..342033 + 86 115360608 - Bamb_5865 - putative type III secretion protein 292 60.95 -1 342207..342416 + 69 115360609 - Bamb_5866 - hypothetical protein 293 60.31 -1 342540..342995 + 151 115360610 - Bamb_5867 - hypothetical protein 294 71.22 +1 343131..344558 - 475 115360611 - Bamb_5868 - type II/III secretion system family protein 295 65.39 0 344555..345340 - 261 115360612 - Bamb_5869 - two component transcriptional regulator 296 70.13 0 345429..346553 - 374 115360613 - Bamb_5870 - PAS/PAC sensor signal transduction histidine kinase 297 67.56 0 346678..348363 - 561 115360614 - Bamb_5871 - YscC/HrcC family type III secretion outer membrane protein 298 65.49 0 348560..349660 + 366 115360615 - Bamb_5872 - type II secretion system protein E 299 67.20 0 349767..351464 - 565 115360616 - Bamb_5873 - type IV prepilin 300 71.88 +1 351457..351936 - 159 115360617 - Bamb_5874 - pilM; PilM 301 64.65 0 351989..352483 - 164 115360618 - Bamb_5875 - putative type IV pilus biogenesis protein 302 64.62 0 352658..353734 - 358 115360619 - Bamb_5876 - type II secretion system protein 303 67.92 0 353724..355244 - 506 115360620 - Bamb_5877 - type II secretion system protein E 304 70.07 0 355522..356109 - 195 115360621 - Bamb_5878 - hypothetical protein 305 69.63 0 356099..357415 - 438 115360622 - Bamb_5879 - pilO; putative type IV pilus biosynthesis protein 306 67.19 0 357441..359174 - 577 115360623 - Bamb_5880 - type IVB pilus formation outer membrane protein 307 72.48 +1 359174..360412 - 412 115360624 - Bamb_5881 - hypothetical protein 308 66.95 0 361210..362643 + 477 115360625 - Bamb_5882 - AraC family transcriptional regulator 309 63.68 0 362818..363285 + 155 115360626 - Bamb_5883 - lytic transglycosylase, catalytic 310 63.86 0 363494..364027 - 177 115360627 - Bamb_5884 - hypothetical protein 311 67.57 0 364491..366803 + 770 115360628 - Bamb_5885 - hypothetical protein 312 64.59 0 367059..367877 + 272 115360629 - Bamb_5886 - hypothetical protein 313 55.30 -2 368012..368143 + 43 115360630 - Bamb_5887 - bacteriophage/transposase fusion protein 314 63.89 0 368302..368661 - 119 115360631 - Bamb_5888 - hypothetical protein 315 68.95 0 368681..368986 - 101 115360632 - Bamb_5889 - hypothetical protein 316 67.18 0 369220..370989 + 589 115360633 - Bamb_5890 - hypothetical protein 317 66.43 0 371158..372012 + 284 115360634 - Bamb_5891 - formyl transferase domain-containing protein 318 69.47 0 372179..373321 - 380 115360635 - Bamb_5892 - hypothetical protein 319 67.63 0 373474..374199 - 241 115360636 - Bamb_5893 - hypothetical protein 320 65.57 0 375158..376072 - 304 115360637 - Bamb_5895 - LysR family transcriptional regulator 321 66.16 0 376191..377378 + 395 115360638 - Bamb_5896 - amidohydrolase 322 66.75 0 377439..378611 + 390 115360639 - Bamb_5897 - outer membrane protein (porin)-like protein 323 67.43 0 378626..379927 + 433 115360640 - Bamb_5898 - major facilitator transporter 324 70.68 +1 380472..381443 - 323 115360641 - Bamb_5899 - ferredoxin 325 69.74 0 381466..382863 - 465 115360642 - Bamb_5900 - sodium/sulphate symporter 326 66.67 0 382860..384086 - 408 115360643 - Bamb_5901 - Rieske (2Fe-2S) domain-containing protein 327 69.70 0 384361..384921 + 186 115360644 - Bamb_5902 - Rossmann fold nucleotide-binding protein-like protein 328 70.39 0 384979..386295 - 438 115360645 - Bamb_5903 - allantoate amidohydrolase 329 71.47 +1 386295..387272 - 325 115360646 - Bamb_5904 - dihydroorotate dehydrogenase family protein 330 73.24 +1 387265..388131 - 288 115360647 - Bamb_5905 - oxidoreductase FAD-binding subunit 331 69.07 0 388171..389418 - 415 115360648 - Bamb_5906 - major facilitator transporter 332 70.68 +1 389569..389892 - 107 115360649 - Bamb_5907 - hypothetical protein 333 66.76 0 389997..391070 - 357 115360650 - Bamb_5908 - porin 334 64.83 0 391183..392814 + 543 115360651 - Bamb_5909 - exodeoxyribonuclease V, beta subunit 335 63.03 0 393560..394273 + 237 115360652 - Bamb_5910 - LuxR family transcriptional regulator 336 64.08 0 394310..394657 + 115 115360653 - Bamb_5911 - LuxR family transcriptional regulator 337 75.36 +2 394800..395627 + 275 115360654 - Bamb_5912 - xylose isomerase domain-containing protein 338 75.63 +2 395624..396538 + 304 115360655 - Bamb_5913 - shikimate 5-dehydrogenase 339 73.57 +1 396586..397599 - 337 115360656 - Bamb_5914 - alcohol dehydrogenase 340 72.25 +1 397596..399134 - 512 115360657 - Bamb_5915 - condensation domain-containing protein 341 71.50 +1 399149..400390 - 413 115360658 - Bamb_5916 - L-carnitine dehydratase/bile acid-inducible protein F 342 75.42 +2 400483..401430 - 315 115360659 - Bamb_5917 - phosphopantetheine-binding 343 73.09 +1 401424..402482 - 352 115360660 - Bamb_5918 - NADH:flavin oxidoreductase/NADH oxidase 344 74.54 +1 402538..409929 - 2463 115360661 - Bamb_5919 - beta-ketoacyl synthase 345 74.43 +1 409955..418882 - 2975 115360662 - Bamb_5920 - beta-ketoacyl synthase 346 74.87 +2 418893..427850 - 2985 115360663 - Bamb_5921 - beta-ketoacyl synthase 347 74.43 +1 427850..433915 - 2021 115360664 - Bamb_5922 - beta-ketoacyl synthase 66.16 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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