IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
222	 61.52	-1	269043..269450	+	135	115360539	-	Bamb_5795	-	cupin 2 domain-containing protein
223	 60.98	-1	269762..270007	+	81	115360540	-	Bamb_5796	-	Zn-dependent alcohol dehydrogenases class III-like protein
224	 63.54	0	270030..270605	+	191	115360541	-	Bamb_5797	-	glutathione-dependent formaldehyde-activating enzyme
225	 57.35	-2	271510..271713	+	67	115360542	-	Bamb_5798	-	cold-shock DNA-binding domain-containing protein
226	 65.51	0	271764..272108	+	114	115360543	-	Bamb_5799	-	hypothetical protein
227	 60.00	-1	272446..272730	+	94	115360544	-	Bamb_5800	-	hypothetical protein
228	 57.50	-2	272747..272986	+	79	115360545	-	Bamb_5801	-	hypothetical protein
229	 60.56	-1	273020..273232	+	70	115360546	-	Bamb_5802	-	ribosomal protein S21
230	 60.19	-1	273893..274108	+	71	115360547	-	Bamb_5804	-	hypothetical protein
231	 60.00	-1	274243..274527	+	94	115360548	-	Bamb_5805	-	hypothetical protein
232	 68.69	0	274845..275537	-	230	115360549	-	Bamb_5806	-	hypothetical protein
233	 66.00	0	275627..276073	-	148	115360550	-	Bamb_5807	-	DoxX family protein
234	 67.41	0	276075..277967	-	630	115360551	-	Bamb_5808	-	amidohydrolase 3
235	 61.31	-1	277986..278153	-	55	115360552	-	Bamb_5809	-	hypothetical protein
236	 63.61	0	278319..279005	-	228	115360553	-	Bamb_5810	-	isochorismatase hydrolase
237	 69.15	0	279312..279593	+	93	115360554	-	Bamb_5811	-	hypothetical protein
238	 69.42	0	279669..280577	+	302	115360555	-	Bamb_5812	-	LysR family transcriptional regulator
239	 70.38	0	280672..282447	-	591	115360556	-	Bamb_5813	-	transcriptional regulator
240	 66.06	0	282813..283634	-	273	115360557	-	Bamb_5814	-	alpha/beta hydrolase fold
241	 69.21	0	283703..284173	-	156	115360558	-	Bamb_5815	-	hypothetical protein
242	 66.05	0	284532..285506	+	324	115360559	-	Bamb_5816	-	alpha/beta hydrolase fold
243	 68.91	0	285510..285776	+	88	115360560	-	Bamb_5817	-	hypothetical protein
244	 69.48	0	285841..287121	+	426	115360561	-	Bamb_5818	-	cytochrome c, class I
245	 67.47	0	287118..287618	+	166	115360562	-	Bamb_5819	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
246	 67.99	0	287618..289879	+	753	115360563	-	Bamb_5820	-	putative aldehyde dehydrogenase
247	 66.01	0	289947..290864	+	305	115360564	-	Bamb_5821	-	LysR family transcriptional regulator
248	 69.38	0	291105..292322	+	405	115360565	-	Bamb_5822	-	major facilitator transporter
249	 69.72	0	292492..293604	+	370	115360566	-	Bamb_5823	-	NADH:flavin oxidoreductase/NADH oxidase
250	 71.43	+1	293683..294354	-	223	115360567	-	Bamb_5824	-	metal-dependent phosphohydrolase
251	 69.77	0	294429..296360	-	643	115360568	-	Bamb_5825	-	amidohydrolase 3
252	 71.76	+1	296467..299313	-	948	115360569	-	Bamb_5826	-	transcriptional regulator
253	 67.33	0	299705..300613	+	302	115360570	-	Bamb_5827	-	AraC family transcriptional regulator
254	 67.47	0	300714..301703	-	329	115360571	-	Bamb_5828	-	beta-lactamase domain-containing protein
255	 69.09	0	301898..302803	+	301	115360572	-	Bamb_5829	-	LysR family transcriptional regulator
256	 67.28	0	302822..304297	-	491	115360573	-	Bamb_5830	-	hypothetical protein
257	 66.04	0	304297..305256	-	319	115360574	-	Bamb_5831	-	hypothetical protein
258	 68.33	0	305376..305915	-	179	115360575	-	Bamb_5832	-	hypothetical protein
259	 63.62	0	306054..307103	-	349	115360576	-	Bamb_5833	-	patatin
260	 66.87	0	307180..310635	-	1151	115360577	-	Bamb_5834	-	adenylate/guanylate cyclase
261	 66.40	0	310724..311479	-	251	115360578	-	Bamb_5835	-	histidine utilization repressor
262	 71.49	+1	311541..313034	-	497	115360579	-	Bamb_5836	-	phenylalanine/histidine ammonia-lyase
263	 66.92	0	313042..313833	-	263	115360580	-	Bamb_5837	-	ABC transporter related
264	 67.47	0	313862..314608	-	248	115360581	-	Bamb_5838	-	polar amino acid ABC transporter, inner membrane subunit
265	 68.74	0	314621..315343	-	240	115360582	-	Bamb_5839	-	polar amino acid ABC transporter, inner membrane subunit
266	 62.15	0	315436..316587	-	383	115360583	-	Bamb_5840	-	extracellular solute-binding protein
267	 59.26	-1	316636..317094	-	152	115360584	-	Bamb_5841	-	pseudoazurin
268	 63.12	0	317152..319377	-	741	115360585	-	Bamb_5842	-	catalase/peroxidase HPI
269	 68.68	0	319651..320841	-	396	115360586	-	Bamb_5843	-	amidohydrolase
270	 69.14	0	320921..322255	-	444	115360587	-	Bamb_5844	-	hypothetical protein
271	 71.67	+1	322304..323821	-	505	115360588	-	Bamb_5845	-	betaine-aldehyde dehydrogenase
272	 71.59	+1	323876..324748	-	290	115360589	-	Bamb_5846	-	6-phosphogluconate dehydrogenase, NAD-binding
273	 66.89	0	324892..325800	+	302	115360590	-	Bamb_5847	-	LysR family transcriptional regulator
274	 68.97	0	325932..326321	-	129	115360591	-	Bamb_5848	-	hypothetical protein
275	 63.07	0	326361..327167	-	268	115360592	-	Bamb_5849	-	type III secretion protein SpaR/YscT/HrcT
276	 69.14	0	327219..327704	-	161	115360593	-	Bamb_5850	-	putative type III secretory pathway protein
277	 69.04	0	327720..329111	-	463	115360594	-	Bamb_5851	-	type III secretion system ATPase
278	 71.83	+1	329162..330169	-	335	115360595	-	Bamb_5852	-	HrpE/YscL family type III secretion apparatus protein
279	 71.67	+1	330163..330921	-	252	115360596	-	Bamb_5853	-	hypothetical protein
280	 66.16	0	330974..331765	-	263	115360597	-	Bamb_5854	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
281	 64.41	0	331948..332346	-	132	115360598	-	Bamb_5855	-	hrpB2; type III secretion protein HrpB2
282	 65.79	0	332375..332944	-	189	115360599	-	Bamb_5856	-	hypothetical protein
283	 64.68	0	333337..334395	+	352	115360600	-	Bamb_5857	-	type III secretion system protein HrcU
284	 66.72	0	334401..336377	+	658	115360601	-	Bamb_5858	-	HrcV family type III secretion protein
285	 67.54	0	336394..337314	+	306	115360602	-	Bamb_5859	-	hypothetical protein
286	 68.40	0	337466..338446	+	326	115360603	-	Bamb_5860	-	type III secretion system apparatus protein YscQ/HrcQ
287	 61.34	-1	338433..339089	+	218	115360604	-	Bamb_5861	-	type III secretion system protein
288	 65.15	0	339100..339363	+	87	115360605	-	Bamb_5862	-	HrpO family type III secretion protein
289	 70.78	+1	339360..340574	+	404	115360606	-	Bamb_5863	-	hypothetical protein
290	 68.88	0	340709..341749	+	346	115360607	-	Bamb_5864	-	sctD; secretion-associated protein
291	 70.11	0	341773..342033	+	86	115360608	-	Bamb_5865	-	putative type III secretion protein
292	 60.95	-1	342207..342416	+	69	115360609	-	Bamb_5866	-	hypothetical protein
293	 60.31	-1	342540..342995	+	151	115360610	-	Bamb_5867	-	hypothetical protein
294	 71.22	+1	343131..344558	-	475	115360611	-	Bamb_5868	-	type II/III secretion system family protein
295	 65.39	0	344555..345340	-	261	115360612	-	Bamb_5869	-	two component transcriptional regulator
296	 70.13	0	345429..346553	-	374	115360613	-	Bamb_5870	-	PAS/PAC sensor signal transduction histidine kinase
297	 67.56	0	346678..348363	-	561	115360614	-	Bamb_5871	-	YscC/HrcC family type III secretion outer membrane protein
298	 65.49	0	348560..349660	+	366	115360615	-	Bamb_5872	-	type II secretion system protein E
299	 67.20	0	349767..351464	-	565	115360616	-	Bamb_5873	-	type IV prepilin
300	 71.88	+1	351457..351936	-	159	115360617	-	Bamb_5874	-	pilM; PilM
301	 64.65	0	351989..352483	-	164	115360618	-	Bamb_5875	-	putative type IV pilus biogenesis protein
302	 64.62	0	352658..353734	-	358	115360619	-	Bamb_5876	-	type II secretion system protein
303	 67.92	0	353724..355244	-	506	115360620	-	Bamb_5877	-	type II secretion system protein E
304	 70.07	0	355522..356109	-	195	115360621	-	Bamb_5878	-	hypothetical protein
305	 69.63	0	356099..357415	-	438	115360622	-	Bamb_5879	-	pilO; putative type IV pilus biosynthesis protein
306	 67.19	0	357441..359174	-	577	115360623	-	Bamb_5880	-	type IVB pilus formation outer membrane protein
307	 72.48	+1	359174..360412	-	412	115360624	-	Bamb_5881	-	hypothetical protein
308	 66.95	0	361210..362643	+	477	115360625	-	Bamb_5882	-	AraC family transcriptional regulator
309	 63.68	0	362818..363285	+	155	115360626	-	Bamb_5883	-	lytic transglycosylase, catalytic
310	 63.86	0	363494..364027	-	177	115360627	-	Bamb_5884	-	hypothetical protein
311	 67.57	0	364491..366803	+	770	115360628	-	Bamb_5885	-	hypothetical protein
312	 64.59	0	367059..367877	+	272	115360629	-	Bamb_5886	-	hypothetical protein
313	 55.30	-2	368012..368143	+	43	115360630	-	Bamb_5887	-	bacteriophage/transposase fusion protein
314	 63.89	0	368302..368661	-	119	115360631	-	Bamb_5888	-	hypothetical protein
315	 68.95	0	368681..368986	-	101	115360632	-	Bamb_5889	-	hypothetical protein
316	 67.18	0	369220..370989	+	589	115360633	-	Bamb_5890	-	hypothetical protein
317	 66.43	0	371158..372012	+	284	115360634	-	Bamb_5891	-	formyl transferase domain-containing protein
318	 69.47	0	372179..373321	-	380	115360635	-	Bamb_5892	-	hypothetical protein
319	 67.63	0	373474..374199	-	241	115360636	-	Bamb_5893	-	hypothetical protein
320	 65.57	0	375158..376072	-	304	115360637	-	Bamb_5895	-	LysR family transcriptional regulator
321	 66.16	0	376191..377378	+	395	115360638	-	Bamb_5896	-	amidohydrolase
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.