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Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472 1013 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 208 67.43 0 253474..254520 - 348 115360525 - Bamb_5781 - AraC family transcriptional regulator 209 68.56 0 254640..256274 - 544 115360526 - Bamb_5782 - AMP-dependent synthetase and ligase 210 71.12 +1 256593..257693 + 366 115360527 - Bamb_5783 - AraC family transcriptional regulator 211 71.55 +1 257720..259213 - 497 115360528 - Bamb_5784 - periplasmic sensor signal transduction histidine kinase 212 68.75 0 259213..259932 - 239 115360529 - Bamb_5785 - two component transcriptional regulator 213 64.16 0 260229..261266 - 345 115360530 - Bamb_5786 - LysR family transcriptional regulator 214 68.82 0 261351..262094 - 247 115360531 - Bamb_5787 - NmrA family protein 215 69.82 0 262300..263790 + 496 115360532 - Bamb_5788 - GntR family transcriptional regulator 216 66.07 0 264080..264580 + 166 115360533 - Bamb_5789 - OsmC family protein 217 59.38 -1 264701..265702 + 333 115360534 - Bamb_5790 - membrane protein-like protein 218 64.09 0 265788..267341 - 517 115360535 - Bamb_5791 - EmrB/QacA family drug resistance transporter 219 62.86 0 267444..267758 - 104 115360536 - Bamb_5792 - hypothetical protein 220 66.87 0 267879..268379 + 166 115360537 - Bamb_5793 - OsmC family protein 221 60.62 -1 268559..269038 + 159 115360538 - Bamb_5794 - alkylhydroperoxidase 222 61.52 -1 269043..269450 + 135 115360539 - Bamb_5795 - cupin 2 domain-containing protein 223 60.98 -1 269762..270007 + 81 115360540 - Bamb_5796 - Zn-dependent alcohol dehydrogenases class III-like protein 224 63.54 0 270030..270605 + 191 115360541 - Bamb_5797 - glutathione-dependent formaldehyde-activating enzyme 225 57.35 -2 271510..271713 + 67 115360542 - Bamb_5798 - cold-shock DNA-binding domain-containing protein 226 65.51 0 271764..272108 + 114 115360543 - Bamb_5799 - hypothetical protein 227 60.00 -1 272446..272730 + 94 115360544 - Bamb_5800 - hypothetical protein 228 57.50 -2 272747..272986 + 79 115360545 - Bamb_5801 - hypothetical protein 229 60.56 -1 273020..273232 + 70 115360546 - Bamb_5802 - ribosomal protein S21 230 60.19 -1 273893..274108 + 71 115360547 - Bamb_5804 - hypothetical protein 231 60.00 -1 274243..274527 + 94 115360548 - Bamb_5805 - hypothetical protein 232 68.69 0 274845..275537 - 230 115360549 - Bamb_5806 - hypothetical protein 233 66.00 0 275627..276073 - 148 115360550 - Bamb_5807 - DoxX family protein 234 67.41 0 276075..277967 - 630 115360551 - Bamb_5808 - amidohydrolase 3 235 61.31 -1 277986..278153 - 55 115360552 - Bamb_5809 - hypothetical protein 236 63.61 0 278319..279005 - 228 115360553 - Bamb_5810 - isochorismatase hydrolase 237 69.15 0 279312..279593 + 93 115360554 - Bamb_5811 - hypothetical protein 238 69.42 0 279669..280577 + 302 115360555 - Bamb_5812 - LysR family transcriptional regulator 239 70.38 0 280672..282447 - 591 115360556 - Bamb_5813 - transcriptional regulator 240 66.06 0 282813..283634 - 273 115360557 - Bamb_5814 - alpha/beta hydrolase fold 241 69.21 0 283703..284173 - 156 115360558 - Bamb_5815 - hypothetical protein 242 66.05 0 284532..285506 + 324 115360559 - Bamb_5816 - alpha/beta hydrolase fold 243 68.91 0 285510..285776 + 88 115360560 - Bamb_5817 - hypothetical protein 244 69.48 0 285841..287121 + 426 115360561 - Bamb_5818 - cytochrome c, class I 245 67.47 0 287118..287618 + 166 115360562 - Bamb_5819 - 2Fe-2S iron-sulfur cluster binding domain-containing protein 246 67.99 0 287618..289879 + 753 115360563 - Bamb_5820 - putative aldehyde dehydrogenase 247 66.01 0 289947..290864 + 305 115360564 - Bamb_5821 - LysR family transcriptional regulator 248 69.38 0 291105..292322 + 405 115360565 - Bamb_5822 - major facilitator transporter 249 69.72 0 292492..293604 + 370 115360566 - Bamb_5823 - NADH:flavin oxidoreductase/NADH oxidase 250 71.43 +1 293683..294354 - 223 115360567 - Bamb_5824 - metal-dependent phosphohydrolase 251 69.77 0 294429..296360 - 643 115360568 - Bamb_5825 - amidohydrolase 3 252 71.76 +1 296467..299313 - 948 115360569 - Bamb_5826 - transcriptional regulator 253 67.33 0 299705..300613 + 302 115360570 - Bamb_5827 - AraC family transcriptional regulator 254 67.47 0 300714..301703 - 329 115360571 - Bamb_5828 - beta-lactamase domain-containing protein 255 69.09 0 301898..302803 + 301 115360572 - Bamb_5829 - LysR family transcriptional regulator 256 67.28 0 302822..304297 - 491 115360573 - Bamb_5830 - hypothetical protein 257 66.04 0 304297..305256 - 319 115360574 - Bamb_5831 - hypothetical protein 258 68.33 0 305376..305915 - 179 115360575 - Bamb_5832 - hypothetical protein 259 63.62 0 306054..307103 - 349 115360576 - Bamb_5833 - patatin 260 66.87 0 307180..310635 - 1151 115360577 - Bamb_5834 - adenylate/guanylate cyclase 261 66.40 0 310724..311479 - 251 115360578 - Bamb_5835 - histidine utilization repressor 262 71.49 +1 311541..313034 - 497 115360579 - Bamb_5836 - phenylalanine/histidine ammonia-lyase 263 66.92 0 313042..313833 - 263 115360580 - Bamb_5837 - ABC transporter related 264 67.47 0 313862..314608 - 248 115360581 - Bamb_5838 - polar amino acid ABC transporter, inner membrane subunit 265 68.74 0 314621..315343 - 240 115360582 - Bamb_5839 - polar amino acid ABC transporter, inner membrane subunit 266 62.15 0 315436..316587 - 383 115360583 - Bamb_5840 - extracellular solute-binding protein 267 59.26 -1 316636..317094 - 152 115360584 - Bamb_5841 - pseudoazurin 268 63.12 0 317152..319377 - 741 115360585 - Bamb_5842 - catalase/peroxidase HPI 269 68.68 0 319651..320841 - 396 115360586 - Bamb_5843 - amidohydrolase 270 69.14 0 320921..322255 - 444 115360587 - Bamb_5844 - hypothetical protein 271 71.67 +1 322304..323821 - 505 115360588 - Bamb_5845 - betaine-aldehyde dehydrogenase 272 71.59 +1 323876..324748 - 290 115360589 - Bamb_5846 - 6-phosphogluconate dehydrogenase, NAD-binding 273 66.89 0 324892..325800 + 302 115360590 - Bamb_5847 - LysR family transcriptional regulator 274 68.97 0 325932..326321 - 129 115360591 - Bamb_5848 - hypothetical protein 275 63.07 0 326361..327167 - 268 115360592 - Bamb_5849 - type III secretion protein SpaR/YscT/HrcT 276 69.14 0 327219..327704 - 161 115360593 - Bamb_5850 - putative type III secretory pathway protein 277 69.04 0 327720..329111 - 463 115360594 - Bamb_5851 - type III secretion system ATPase 278 71.83 +1 329162..330169 - 335 115360595 - Bamb_5852 - HrpE/YscL family type III secretion apparatus protein 279 71.67 +1 330163..330921 - 252 115360596 - Bamb_5853 - hypothetical protein 280 66.16 0 330974..331765 - 263 115360597 - Bamb_5854 - YscJ/HrcJ family type III secretion apparatus lipoprotein 281 64.41 0 331948..332346 - 132 115360598 - Bamb_5855 - hrpB2; type III secretion protein HrpB2 282 65.79 0 332375..332944 - 189 115360599 - Bamb_5856 - hypothetical protein 283 64.68 0 333337..334395 + 352 115360600 - Bamb_5857 - type III secretion system protein HrcU 284 66.72 0 334401..336377 + 658 115360601 - Bamb_5858 - HrcV family type III secretion protein 285 67.54 0 336394..337314 + 306 115360602 - Bamb_5859 - hypothetical protein 286 68.40 0 337466..338446 + 326 115360603 - Bamb_5860 - type III secretion system apparatus protein YscQ/HrcQ 287 61.34 -1 338433..339089 + 218 115360604 - Bamb_5861 - type III secretion system protein 288 65.15 0 339100..339363 + 87 115360605 - Bamb_5862 - HrpO family type III secretion protein 289 70.78 +1 339360..340574 + 404 115360606 - Bamb_5863 - hypothetical protein 290 68.88 0 340709..341749 + 346 115360607 - Bamb_5864 - sctD; secretion-associated protein 291 70.11 0 341773..342033 + 86 115360608 - Bamb_5865 - putative type III secretion protein 292 60.95 -1 342207..342416 + 69 115360609 - Bamb_5866 - hypothetical protein 293 60.31 -1 342540..342995 + 151 115360610 - Bamb_5867 - hypothetical protein 294 71.22 +1 343131..344558 - 475 115360611 - Bamb_5868 - type II/III secretion system family protein 295 65.39 0 344555..345340 - 261 115360612 - Bamb_5869 - two component transcriptional regulator 296 70.13 0 345429..346553 - 374 115360613 - Bamb_5870 - PAS/PAC sensor signal transduction histidine kinase 297 67.56 0 346678..348363 - 561 115360614 - Bamb_5871 - YscC/HrcC family type III secretion outer membrane protein 298 65.49 0 348560..349660 + 366 115360615 - Bamb_5872 - type II secretion system protein E 299 67.20 0 349767..351464 - 565 115360616 - Bamb_5873 - type IV prepilin 300 71.88 +1 351457..351936 - 159 115360617 - Bamb_5874 - pilM; PilM 301 64.65 0 351989..352483 - 164 115360618 - Bamb_5875 - putative type IV pilus biogenesis protein 302 64.62 0 352658..353734 - 358 115360619 - Bamb_5876 - type II secretion system protein 303 67.92 0 353724..355244 - 506 115360620 - Bamb_5877 - type II secretion system protein E 304 70.07 0 355522..356109 - 195 115360621 - Bamb_5878 - hypothetical protein 305 69.63 0 356099..357415 - 438 115360622 - Bamb_5879 - pilO; putative type IV pilus biosynthesis protein 306 67.19 0 357441..359174 - 577 115360623 - Bamb_5880 - type IVB pilus formation outer membrane protein 307 72.48 +1 359174..360412 - 412 115360624 - Bamb_5881 - hypothetical protein 66.16 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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