IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
196	 65.87	0	236687..238825	+	712	115360513	-	Bamb_5769	-	hypothetical protein
197	 66.43	0	239005..239859	-	284	115360514	-	Bamb_5770	-	3-hydroxybutyryl-CoA dehydrogenase
198	 67.76	0	239898..241091	-	397	115360515	-	Bamb_5771	-	beta-ketothiolase
199	 65.35	0	241140..242813	-	557	115360516	-	Bamb_5772	-	electron-transferring-flavoprotein dehydrogenase
200	 67.28	0	242848..244638	-	596	115360517	-	Bamb_5773	-	acyl-CoA dehydrogenase domain-containing protein
201	 68.41	0	245124..246041	-	305	115360518	-	Bamb_5774	-	LysR family transcriptional regulator
202	 66.54	0	246180..246944	+	254	115360519	-	Bamb_5775	-	short-chain dehydrogenase/reductase SDR
203	 64.55	0	247019..247726	+	235	115360520	-	Bamb_5776	-	pirin domain-containing protein
204	 65.14	0	247966..248556	+	196	115360521	-	Bamb_5777	-	putative transcriptional regulator protein
205	 68.14	0	249076..250707	+	543	115360522	pntA	Bamb_5778	-	NAD(P) transhydrogenase subunit alpha
206	 66.03	0	250721..252133	+	470	115360523	-	Bamb_5779	-	NAD(P) transhydrogenase, beta subunit
207	 66.01	0	252243..253316	+	357	115360524	-	Bamb_5780	-	dihydrokaempferol 4-reductase
208	 67.43	0	253474..254520	-	348	115360525	-	Bamb_5781	-	AraC family transcriptional regulator
209	 68.56	0	254640..256274	-	544	115360526	-	Bamb_5782	-	AMP-dependent synthetase and ligase
210	 71.12	+1	256593..257693	+	366	115360527	-	Bamb_5783	-	AraC family transcriptional regulator
211	 71.55	+1	257720..259213	-	497	115360528	-	Bamb_5784	-	periplasmic sensor signal transduction histidine kinase
212	 68.75	0	259213..259932	-	239	115360529	-	Bamb_5785	-	two component transcriptional regulator
213	 64.16	0	260229..261266	-	345	115360530	-	Bamb_5786	-	LysR family transcriptional regulator
214	 68.82	0	261351..262094	-	247	115360531	-	Bamb_5787	-	NmrA family protein
215	 69.82	0	262300..263790	+	496	115360532	-	Bamb_5788	-	GntR family transcriptional regulator
216	 66.07	0	264080..264580	+	166	115360533	-	Bamb_5789	-	OsmC family protein
217	 59.38	-1	264701..265702	+	333	115360534	-	Bamb_5790	-	membrane protein-like protein
218	 64.09	0	265788..267341	-	517	115360535	-	Bamb_5791	-	EmrB/QacA family drug resistance transporter
219	 62.86	0	267444..267758	-	104	115360536	-	Bamb_5792	-	hypothetical protein
220	 66.87	0	267879..268379	+	166	115360537	-	Bamb_5793	-	OsmC family protein
221	 60.62	-1	268559..269038	+	159	115360538	-	Bamb_5794	-	alkylhydroperoxidase
222	 61.52	-1	269043..269450	+	135	115360539	-	Bamb_5795	-	cupin 2 domain-containing protein
223	 60.98	-1	269762..270007	+	81	115360540	-	Bamb_5796	-	Zn-dependent alcohol dehydrogenases class III-like protein
224	 63.54	0	270030..270605	+	191	115360541	-	Bamb_5797	-	glutathione-dependent formaldehyde-activating enzyme
225	 57.35	-2	271510..271713	+	67	115360542	-	Bamb_5798	-	cold-shock DNA-binding domain-containing protein
226	 65.51	0	271764..272108	+	114	115360543	-	Bamb_5799	-	hypothetical protein
227	 60.00	-1	272446..272730	+	94	115360544	-	Bamb_5800	-	hypothetical protein
228	 57.50	-2	272747..272986	+	79	115360545	-	Bamb_5801	-	hypothetical protein
229	 60.56	-1	273020..273232	+	70	115360546	-	Bamb_5802	-	ribosomal protein S21
230	 60.19	-1	273893..274108	+	71	115360547	-	Bamb_5804	-	hypothetical protein
231	 60.00	-1	274243..274527	+	94	115360548	-	Bamb_5805	-	hypothetical protein
232	 68.69	0	274845..275537	-	230	115360549	-	Bamb_5806	-	hypothetical protein
233	 66.00	0	275627..276073	-	148	115360550	-	Bamb_5807	-	DoxX family protein
234	 67.41	0	276075..277967	-	630	115360551	-	Bamb_5808	-	amidohydrolase 3
235	 61.31	-1	277986..278153	-	55	115360552	-	Bamb_5809	-	hypothetical protein
236	 63.61	0	278319..279005	-	228	115360553	-	Bamb_5810	-	isochorismatase hydrolase
237	 69.15	0	279312..279593	+	93	115360554	-	Bamb_5811	-	hypothetical protein
238	 69.42	0	279669..280577	+	302	115360555	-	Bamb_5812	-	LysR family transcriptional regulator
239	 70.38	0	280672..282447	-	591	115360556	-	Bamb_5813	-	transcriptional regulator
240	 66.06	0	282813..283634	-	273	115360557	-	Bamb_5814	-	alpha/beta hydrolase fold
241	 69.21	0	283703..284173	-	156	115360558	-	Bamb_5815	-	hypothetical protein
242	 66.05	0	284532..285506	+	324	115360559	-	Bamb_5816	-	alpha/beta hydrolase fold
243	 68.91	0	285510..285776	+	88	115360560	-	Bamb_5817	-	hypothetical protein
244	 69.48	0	285841..287121	+	426	115360561	-	Bamb_5818	-	cytochrome c, class I
245	 67.47	0	287118..287618	+	166	115360562	-	Bamb_5819	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
246	 67.99	0	287618..289879	+	753	115360563	-	Bamb_5820	-	putative aldehyde dehydrogenase
247	 66.01	0	289947..290864	+	305	115360564	-	Bamb_5821	-	LysR family transcriptional regulator
248	 69.38	0	291105..292322	+	405	115360565	-	Bamb_5822	-	major facilitator transporter
249	 69.72	0	292492..293604	+	370	115360566	-	Bamb_5823	-	NADH:flavin oxidoreductase/NADH oxidase
250	 71.43	+1	293683..294354	-	223	115360567	-	Bamb_5824	-	metal-dependent phosphohydrolase
251	 69.77	0	294429..296360	-	643	115360568	-	Bamb_5825	-	amidohydrolase 3
252	 71.76	+1	296467..299313	-	948	115360569	-	Bamb_5826	-	transcriptional regulator
253	 67.33	0	299705..300613	+	302	115360570	-	Bamb_5827	-	AraC family transcriptional regulator
254	 67.47	0	300714..301703	-	329	115360571	-	Bamb_5828	-	beta-lactamase domain-containing protein
255	 69.09	0	301898..302803	+	301	115360572	-	Bamb_5829	-	LysR family transcriptional regulator
256	 67.28	0	302822..304297	-	491	115360573	-	Bamb_5830	-	hypothetical protein
257	 66.04	0	304297..305256	-	319	115360574	-	Bamb_5831	-	hypothetical protein
258	 68.33	0	305376..305915	-	179	115360575	-	Bamb_5832	-	hypothetical protein
259	 63.62	0	306054..307103	-	349	115360576	-	Bamb_5833	-	patatin
260	 66.87	0	307180..310635	-	1151	115360577	-	Bamb_5834	-	adenylate/guanylate cyclase
261	 66.40	0	310724..311479	-	251	115360578	-	Bamb_5835	-	histidine utilization repressor
262	 71.49	+1	311541..313034	-	497	115360579	-	Bamb_5836	-	phenylalanine/histidine ammonia-lyase
263	 66.92	0	313042..313833	-	263	115360580	-	Bamb_5837	-	ABC transporter related
264	 67.47	0	313862..314608	-	248	115360581	-	Bamb_5838	-	polar amino acid ABC transporter, inner membrane subunit
265	 68.74	0	314621..315343	-	240	115360582	-	Bamb_5839	-	polar amino acid ABC transporter, inner membrane subunit
266	 62.15	0	315436..316587	-	383	115360583	-	Bamb_5840	-	extracellular solute-binding protein
267	 59.26	-1	316636..317094	-	152	115360584	-	Bamb_5841	-	pseudoazurin
268	 63.12	0	317152..319377	-	741	115360585	-	Bamb_5842	-	catalase/peroxidase HPI
269	 68.68	0	319651..320841	-	396	115360586	-	Bamb_5843	-	amidohydrolase
270	 69.14	0	320921..322255	-	444	115360587	-	Bamb_5844	-	hypothetical protein
271	 71.67	+1	322304..323821	-	505	115360588	-	Bamb_5845	-	betaine-aldehyde dehydrogenase
272	 71.59	+1	323876..324748	-	290	115360589	-	Bamb_5846	-	6-phosphogluconate dehydrogenase, NAD-binding
273	 66.89	0	324892..325800	+	302	115360590	-	Bamb_5847	-	LysR family transcriptional regulator
274	 68.97	0	325932..326321	-	129	115360591	-	Bamb_5848	-	hypothetical protein
275	 63.07	0	326361..327167	-	268	115360592	-	Bamb_5849	-	type III secretion protein SpaR/YscT/HrcT
276	 69.14	0	327219..327704	-	161	115360593	-	Bamb_5850	-	putative type III secretory pathway protein
277	 69.04	0	327720..329111	-	463	115360594	-	Bamb_5851	-	type III secretion system ATPase
278	 71.83	+1	329162..330169	-	335	115360595	-	Bamb_5852	-	HrpE/YscL family type III secretion apparatus protein
279	 71.67	+1	330163..330921	-	252	115360596	-	Bamb_5853	-	hypothetical protein
280	 66.16	0	330974..331765	-	263	115360597	-	Bamb_5854	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
281	 64.41	0	331948..332346	-	132	115360598	-	Bamb_5855	-	hrpB2; type III secretion protein HrpB2
282	 65.79	0	332375..332944	-	189	115360599	-	Bamb_5856	-	hypothetical protein
283	 64.68	0	333337..334395	+	352	115360600	-	Bamb_5857	-	type III secretion system protein HrcU
284	 66.72	0	334401..336377	+	658	115360601	-	Bamb_5858	-	HrcV family type III secretion protein
285	 67.54	0	336394..337314	+	306	115360602	-	Bamb_5859	-	hypothetical protein
286	 68.40	0	337466..338446	+	326	115360603	-	Bamb_5860	-	type III secretion system apparatus protein YscQ/HrcQ
287	 61.34	-1	338433..339089	+	218	115360604	-	Bamb_5861	-	type III secretion system protein
288	 65.15	0	339100..339363	+	87	115360605	-	Bamb_5862	-	HrpO family type III secretion protein
289	 70.78	+1	339360..340574	+	404	115360606	-	Bamb_5863	-	hypothetical protein
290	 68.88	0	340709..341749	+	346	115360607	-	Bamb_5864	-	sctD; secretion-associated protein
291	 70.11	0	341773..342033	+	86	115360608	-	Bamb_5865	-	putative type III secretion protein
292	 60.95	-1	342207..342416	+	69	115360609	-	Bamb_5866	-	hypothetical protein
293	 60.31	-1	342540..342995	+	151	115360610	-	Bamb_5867	-	hypothetical protein
294	 71.22	+1	343131..344558	-	475	115360611	-	Bamb_5868	-	type II/III secretion system family protein
295	 65.39	0	344555..345340	-	261	115360612	-	Bamb_5869	-	two component transcriptional regulator
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.