IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
159	 65.48	0	186310..187155	-	281	115360476	-	Bamb_5732	-	abortive infection protein
160	 68.82	0	187213..187629	-	138	115360477	-	Bamb_5733	-	OsmC family protein
161	 65.85	0	187676..187921	-	81	115360478	-	Bamb_5734	-	hypothetical protein
162	 60.18	-1	188247..188693	+	148	115360479	-	Bamb_5735	-	protein of unknown function DUF861, cupin_3
163	 66.67	0	188784..190037	+	417	115360480	-	Bamb_5736	-	condensation domain-containing protein
164	 68.01	0	190130..191323	-	397	115360481	-	Bamb_5737	-	major facilitator transporter
165	 68.32	0	191496..191918	-	140	115360482	-	Bamb_5738	-	hypothetical protein
166	 67.02	0	191941..192789	-	282	115360483	-	Bamb_5739	-	short-chain dehydrogenase/reductase SDR
167	 68.08	0	193168..194298	-	376	115360484	-	Bamb_5740	-	periplasmic sensor signal transduction histidine kinase
168	 67.97	0	194434..194817	-	127	115360485	-	Bamb_5741	-	response regulator receiver protein
169	 63.64	0	195045..195704	-	219	115360486	-	Bamb_5742	-	two component LuxR family transcriptional regulator
170	 69.28	0	195822..200879	-	1685	115360487	-	Bamb_5743	-	ATPase domain-containing protein
171	 63.72	0	201242..201817	+	191	115360488	-	Bamb_5744	-	hypothetical protein
172	 66.46	0	202015..202500	+	161	115360489	-	Bamb_5745	-	hypothetical protein
173	 64.85	0	202577..203017	-	146	115360490	-	Bamb_5746	-	hypothetical protein
174	 63.08	0	203114..203503	-	129	115360491	-	Bamb_5747	-	hypothetical protein
175	 67.23	0	203742..205154	-	470	115360492	-	Bamb_5748	-	GAF sensor signal transduction histidine kinase
176	 59.88	-1	205487..206164	+	225	115360493	-	Bamb_5749	-	TetR family transcriptional regulator
177	 72.16	+1	206222..207076	+	284	115360494	-	Bamb_5750	-	molybdopterin dehydrogenase, FAD-binding
178	 69.32	0	207057..209879	+	940	115360495	-	Bamb_5751	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
179	 64.55	0	209907..211184	+	425	115360496	-	Bamb_5752	-	major facilitator transporter
180	 66.67	0	211225..212004	-	259	115360497	-	Bamb_5753	-	GCN5-related N-acetyltransferase
181	 67.46	0	212154..215663	-	1169	115360498	-	Bamb_5754	-	pyruvate carboxylase
182	 64.37	0	216021..217022	-	333	115360499	-	Bamb_5755	-	LysR family transcriptional regulator
183	 67.80	0	217440..218933	-	497	115360500	-	Bamb_5756	-	betaine-aldehyde dehydrogenase
184	 68.09	0	218950..220281	-	443	115360501	-	Bamb_5757	-	FAD dependent oxidoreductase
185	 66.10	0	220288..221175	-	295	115360502	-	Bamb_5758	-	dihydrodipicolinate synthetase
186	 68.21	0	221335..222630	-	431	115360503	-	Bamb_5759	-	glycine hydroxymethyltransferase
187	 63.38	0	222753..223634	-	293	115360504	-	Bamb_5760	-	substrate-binding region of ABC-type glycine betaine transport system
188	 66.33	0	223785..224672	-	295	115360505	-	Bamb_5761	-	binding-protein-dependent transport systems inner membrane component
189	 65.66	0	224669..225958	-	429	115360506	-	Bamb_5762	-	glycine betaine/L-proline ABC transporter, ATPase subunit
190	 65.58	0	227216..228871	+	551	115360507	-	Bamb_5763	-	AMP-dependent synthetase and ligase
191	 67.12	0	228868..229755	+	295	115360508	-	Bamb_5764	-	hypothetical protein
192	 67.38	0	229755..230870	+	371	115360509	-	Bamb_5765	-	3-oxoacyl-(acyl-carrier-protein) synthase
193	 67.57	0	230867..231865	+	332	115360510	-	Bamb_5766	-	3-oxoacyl-(acyl carrier protein) synthase III
194	 64.44	0	231871..232767	+	298	115360511	-	Bamb_5767	-	beta-lactamase domain-containing protein
195	 66.62	0	232797..236675	+	1292	115360512	-	Bamb_5768	-	AMP-dependent synthetase and ligase
196	 65.87	0	236687..238825	+	712	115360513	-	Bamb_5769	-	hypothetical protein
197	 66.43	0	239005..239859	-	284	115360514	-	Bamb_5770	-	3-hydroxybutyryl-CoA dehydrogenase
198	 67.76	0	239898..241091	-	397	115360515	-	Bamb_5771	-	beta-ketothiolase
199	 65.35	0	241140..242813	-	557	115360516	-	Bamb_5772	-	electron-transferring-flavoprotein dehydrogenase
200	 67.28	0	242848..244638	-	596	115360517	-	Bamb_5773	-	acyl-CoA dehydrogenase domain-containing protein
201	 68.41	0	245124..246041	-	305	115360518	-	Bamb_5774	-	LysR family transcriptional regulator
202	 66.54	0	246180..246944	+	254	115360519	-	Bamb_5775	-	short-chain dehydrogenase/reductase SDR
203	 64.55	0	247019..247726	+	235	115360520	-	Bamb_5776	-	pirin domain-containing protein
204	 65.14	0	247966..248556	+	196	115360521	-	Bamb_5777	-	putative transcriptional regulator protein
205	 68.14	0	249076..250707	+	543	115360522	pntA	Bamb_5778	-	NAD(P) transhydrogenase subunit alpha
206	 66.03	0	250721..252133	+	470	115360523	-	Bamb_5779	-	NAD(P) transhydrogenase, beta subunit
207	 66.01	0	252243..253316	+	357	115360524	-	Bamb_5780	-	dihydrokaempferol 4-reductase
208	 67.43	0	253474..254520	-	348	115360525	-	Bamb_5781	-	AraC family transcriptional regulator
209	 68.56	0	254640..256274	-	544	115360526	-	Bamb_5782	-	AMP-dependent synthetase and ligase
210	 71.12	+1	256593..257693	+	366	115360527	-	Bamb_5783	-	AraC family transcriptional regulator
211	 71.55	+1	257720..259213	-	497	115360528	-	Bamb_5784	-	periplasmic sensor signal transduction histidine kinase
212	 68.75	0	259213..259932	-	239	115360529	-	Bamb_5785	-	two component transcriptional regulator
213	 64.16	0	260229..261266	-	345	115360530	-	Bamb_5786	-	LysR family transcriptional regulator
214	 68.82	0	261351..262094	-	247	115360531	-	Bamb_5787	-	NmrA family protein
215	 69.82	0	262300..263790	+	496	115360532	-	Bamb_5788	-	GntR family transcriptional regulator
216	 66.07	0	264080..264580	+	166	115360533	-	Bamb_5789	-	OsmC family protein
217	 59.38	-1	264701..265702	+	333	115360534	-	Bamb_5790	-	membrane protein-like protein
218	 64.09	0	265788..267341	-	517	115360535	-	Bamb_5791	-	EmrB/QacA family drug resistance transporter
219	 62.86	0	267444..267758	-	104	115360536	-	Bamb_5792	-	hypothetical protein
220	 66.87	0	267879..268379	+	166	115360537	-	Bamb_5793	-	OsmC family protein
221	 60.62	-1	268559..269038	+	159	115360538	-	Bamb_5794	-	alkylhydroperoxidase
222	 61.52	-1	269043..269450	+	135	115360539	-	Bamb_5795	-	cupin 2 domain-containing protein
223	 60.98	-1	269762..270007	+	81	115360540	-	Bamb_5796	-	Zn-dependent alcohol dehydrogenases class III-like protein
224	 63.54	0	270030..270605	+	191	115360541	-	Bamb_5797	-	glutathione-dependent formaldehyde-activating enzyme
225	 57.35	-2	271510..271713	+	67	115360542	-	Bamb_5798	-	cold-shock DNA-binding domain-containing protein
226	 65.51	0	271764..272108	+	114	115360543	-	Bamb_5799	-	hypothetical protein
227	 60.00	-1	272446..272730	+	94	115360544	-	Bamb_5800	-	hypothetical protein
228	 57.50	-2	272747..272986	+	79	115360545	-	Bamb_5801	-	hypothetical protein
229	 60.56	-1	273020..273232	+	70	115360546	-	Bamb_5802	-	ribosomal protein S21
230	 60.19	-1	273893..274108	+	71	115360547	-	Bamb_5804	-	hypothetical protein
231	 60.00	-1	274243..274527	+	94	115360548	-	Bamb_5805	-	hypothetical protein
232	 68.69	0	274845..275537	-	230	115360549	-	Bamb_5806	-	hypothetical protein
233	 66.00	0	275627..276073	-	148	115360550	-	Bamb_5807	-	DoxX family protein
234	 67.41	0	276075..277967	-	630	115360551	-	Bamb_5808	-	amidohydrolase 3
235	 61.31	-1	277986..278153	-	55	115360552	-	Bamb_5809	-	hypothetical protein
236	 63.61	0	278319..279005	-	228	115360553	-	Bamb_5810	-	isochorismatase hydrolase
237	 69.15	0	279312..279593	+	93	115360554	-	Bamb_5811	-	hypothetical protein
238	 69.42	0	279669..280577	+	302	115360555	-	Bamb_5812	-	LysR family transcriptional regulator
239	 70.38	0	280672..282447	-	591	115360556	-	Bamb_5813	-	transcriptional regulator
240	 66.06	0	282813..283634	-	273	115360557	-	Bamb_5814	-	alpha/beta hydrolase fold
241	 69.21	0	283703..284173	-	156	115360558	-	Bamb_5815	-	hypothetical protein
242	 66.05	0	284532..285506	+	324	115360559	-	Bamb_5816	-	alpha/beta hydrolase fold
243	 68.91	0	285510..285776	+	88	115360560	-	Bamb_5817	-	hypothetical protein
244	 69.48	0	285841..287121	+	426	115360561	-	Bamb_5818	-	cytochrome c, class I
245	 67.47	0	287118..287618	+	166	115360562	-	Bamb_5819	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
246	 67.99	0	287618..289879	+	753	115360563	-	Bamb_5820	-	putative aldehyde dehydrogenase
247	 66.01	0	289947..290864	+	305	115360564	-	Bamb_5821	-	LysR family transcriptional regulator
248	 69.38	0	291105..292322	+	405	115360565	-	Bamb_5822	-	major facilitator transporter
249	 69.72	0	292492..293604	+	370	115360566	-	Bamb_5823	-	NADH:flavin oxidoreductase/NADH oxidase
250	 71.43	+1	293683..294354	-	223	115360567	-	Bamb_5824	-	metal-dependent phosphohydrolase
251	 69.77	0	294429..296360	-	643	115360568	-	Bamb_5825	-	amidohydrolase 3
252	 71.76	+1	296467..299313	-	948	115360569	-	Bamb_5826	-	transcriptional regulator
253	 67.33	0	299705..300613	+	302	115360570	-	Bamb_5827	-	AraC family transcriptional regulator
254	 67.47	0	300714..301703	-	329	115360571	-	Bamb_5828	-	beta-lactamase domain-containing protein
255	 69.09	0	301898..302803	+	301	115360572	-	Bamb_5829	-	LysR family transcriptional regulator
256	 67.28	0	302822..304297	-	491	115360573	-	Bamb_5830	-	hypothetical protein
257	 66.04	0	304297..305256	-	319	115360574	-	Bamb_5831	-	hypothetical protein
258	 68.33	0	305376..305915	-	179	115360575	-	Bamb_5832	-	hypothetical protein
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.