IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.16 STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
122	 63.91	0	136487..137611	+	374	115360439	-	Bamb_5695	-	transaminase
123	 64.29	0	137649..139076	-	475	115360440	-	Bamb_5696	-	GntR family transcriptional regulator
124	 71.81	+1	139394..141802	+	802	115360441	-	Bamb_5697	-	hypothetical protein
125	 59.27	-1	141953..143776	+	607	115360442	-	Bamb_5698	-	ATPase
126	 60.47	-1	143780..144424	+	214	115360443	-	Bamb_5699	-	organic radical activating enzyme family protein
127	 62.15	0	144442..150756	+	2104	115360444	-	Bamb_5700	-	serine/threonine protein kinase
128	 61.02	-1	150753..152099	+	448	115360445	-	Bamb_5701	-	hypothetical protein
129	 55.45	-2	152170..152472	-	100	115360446	-	Bamb_5702	-	hypothetical protein
130	 66.45	0	153331..154242	-	303	115360447	-	Bamb_5703	-	hypothetical protein
131	 60.88	-1	154302..154664	-	120	115360448	-	Bamb_5704	-	TfoX domain-containing protein
132	 72.48	+1	154704..156440	-	578	115360449	-	Bamb_5705	-	phage integrase family protein
133	 67.85	0	156540..157805	-	421	115360450	-	Bamb_5706	-	major facilitator transporter
134	 69.33	0	157821..158609	-	262	115360451	-	Bamb_5707	-	PpiC-type peptidyl-prolyl cis-trans isomerase
135	 64.47	0	158619..159302	-	227	115360452	-	Bamb_5708	-	respiratory nitrate reductase, gamma subunit
136	 71.51	+1	159327..160028	-	233	115360453	-	Bamb_5709	-	nitrate reductase molybdenum cofactor assembly chaperone
137	 65.04	0	160025..161560	-	511	115360454	-	Bamb_5710	-	nitrate reductase, beta subunit
138	 66.30	0	161557..165402	-	1281	115360455	-	Bamb_5711	-	nitrate reductase, alpha subunit
139	 67.67	0	165755..166945	+	396	115360456	-	Bamb_5712	-	TPR repeat-containing protein
140	 67.71	0	167052..167243	-	63	115360457	-	Bamb_5713	-	hypothetical protein
141	 68.33	0	167258..167737	-	159	115360458	-	Bamb_5714	-	UspA domain-containing protein
142	 70.60	+1	168002..168763	+	253	115360459	-	Bamb_5715	-	2-keto-4-pentenoate hydratase-like protein
143	 69.35	0	168794..169054	+	86	115360460	-	Bamb_5716	-	hypothetical protein
144	 71.13	+1	169045..170457	+	470	115360461	-	Bamb_5717	-	hypothetical protein
145	 68.95	0	170503..171555	-	350	115360462	-	Bamb_5718	-	AraC family transcriptional regulator
146	 64.22	0	171703..172029	-	108	115360463	-	Bamb_5719	-	hypothetical protein
147	 70.32	0	172061..173566	-	501	115360464	-	Bamb_5720	-	hypothetical protein
148	 69.38	0	173969..176140	+	723	115360465	-	Bamb_5721	-	hypothetical protein
149	 68.64	0	176148..176855	+	235	115360466	-	Bamb_5722	-	hypothetical protein
150	 66.07	0	176937..177773	-	278	115360467	-	Bamb_5723	-	alpha/beta hydrolase fold
151	 67.20	0	178019..178393	+	124	115360468	-	Bamb_5724	-	glyoxalase/bleomycin resistance protein/dioxygenase
152	 68.71	0	178474..179307	-	277	115360469	-	Bamb_5725	-	short chain dehydrogenase
153	 68.00	0	179402..180373	+	323	115360470	-	Bamb_5726	-	AraC family transcriptional regulator
154	 67.52	0	180404..181576	-	390	115360471	-	Bamb_5727	-	aldose 1-epimerase
155	 65.09	0	181755..183083	-	442	115360472	-	Bamb_5728	-	major facilitator transporter
156	 67.88	0	183319..184224	+	301	115360473	-	Bamb_5729	-	2-dehydropantoate 2-reductase
157	 67.00	0	184645..185556	-	303	115360474	-	Bamb_5730	-	putative transmembrane anti-sigma factor
158	 67.21	0	185559..186107	-	182	115360475	-	Bamb_5731	-	ECF subfamily RNA polymerase sigma-24 factor
159	 65.48	0	186310..187155	-	281	115360476	-	Bamb_5732	-	abortive infection protein
160	 68.82	0	187213..187629	-	138	115360477	-	Bamb_5733	-	OsmC family protein
161	 65.85	0	187676..187921	-	81	115360478	-	Bamb_5734	-	hypothetical protein
162	 60.18	-1	188247..188693	+	148	115360479	-	Bamb_5735	-	protein of unknown function DUF861, cupin_3
163	 66.67	0	188784..190037	+	417	115360480	-	Bamb_5736	-	condensation domain-containing protein
164	 68.01	0	190130..191323	-	397	115360481	-	Bamb_5737	-	major facilitator transporter
165	 68.32	0	191496..191918	-	140	115360482	-	Bamb_5738	-	hypothetical protein
166	 67.02	0	191941..192789	-	282	115360483	-	Bamb_5739	-	short-chain dehydrogenase/reductase SDR
167	 68.08	0	193168..194298	-	376	115360484	-	Bamb_5740	-	periplasmic sensor signal transduction histidine kinase
168	 67.97	0	194434..194817	-	127	115360485	-	Bamb_5741	-	response regulator receiver protein
169	 63.64	0	195045..195704	-	219	115360486	-	Bamb_5742	-	two component LuxR family transcriptional regulator
170	 69.28	0	195822..200879	-	1685	115360487	-	Bamb_5743	-	ATPase domain-containing protein
171	 63.72	0	201242..201817	+	191	115360488	-	Bamb_5744	-	hypothetical protein
172	 66.46	0	202015..202500	+	161	115360489	-	Bamb_5745	-	hypothetical protein
173	 64.85	0	202577..203017	-	146	115360490	-	Bamb_5746	-	hypothetical protein
174	 63.08	0	203114..203503	-	129	115360491	-	Bamb_5747	-	hypothetical protein
175	 67.23	0	203742..205154	-	470	115360492	-	Bamb_5748	-	GAF sensor signal transduction histidine kinase
176	 59.88	-1	205487..206164	+	225	115360493	-	Bamb_5749	-	TetR family transcriptional regulator
177	 72.16	+1	206222..207076	+	284	115360494	-	Bamb_5750	-	molybdopterin dehydrogenase, FAD-binding
178	 69.32	0	207057..209879	+	940	115360495	-	Bamb_5751	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
179	 64.55	0	209907..211184	+	425	115360496	-	Bamb_5752	-	major facilitator transporter
180	 66.67	0	211225..212004	-	259	115360497	-	Bamb_5753	-	GCN5-related N-acetyltransferase
181	 67.46	0	212154..215663	-	1169	115360498	-	Bamb_5754	-	pyruvate carboxylase
182	 64.37	0	216021..217022	-	333	115360499	-	Bamb_5755	-	LysR family transcriptional regulator
183	 67.80	0	217440..218933	-	497	115360500	-	Bamb_5756	-	betaine-aldehyde dehydrogenase
184	 68.09	0	218950..220281	-	443	115360501	-	Bamb_5757	-	FAD dependent oxidoreductase
185	 66.10	0	220288..221175	-	295	115360502	-	Bamb_5758	-	dihydrodipicolinate synthetase
186	 68.21	0	221335..222630	-	431	115360503	-	Bamb_5759	-	glycine hydroxymethyltransferase
187	 63.38	0	222753..223634	-	293	115360504	-	Bamb_5760	-	substrate-binding region of ABC-type glycine betaine transport system
188	 66.33	0	223785..224672	-	295	115360505	-	Bamb_5761	-	binding-protein-dependent transport systems inner membrane component
189	 65.66	0	224669..225958	-	429	115360506	-	Bamb_5762	-	glycine betaine/L-proline ABC transporter, ATPase subunit
190	 65.58	0	227216..228871	+	551	115360507	-	Bamb_5763	-	AMP-dependent synthetase and ligase
191	 67.12	0	228868..229755	+	295	115360508	-	Bamb_5764	-	hypothetical protein
192	 67.38	0	229755..230870	+	371	115360509	-	Bamb_5765	-	3-oxoacyl-(acyl-carrier-protein) synthase
193	 67.57	0	230867..231865	+	332	115360510	-	Bamb_5766	-	3-oxoacyl-(acyl carrier protein) synthase III
194	 64.44	0	231871..232767	+	298	115360511	-	Bamb_5767	-	beta-lactamase domain-containing protein
195	 66.62	0	232797..236675	+	1292	115360512	-	Bamb_5768	-	AMP-dependent synthetase and ligase
196	 65.87	0	236687..238825	+	712	115360513	-	Bamb_5769	-	hypothetical protein
197	 66.43	0	239005..239859	-	284	115360514	-	Bamb_5770	-	3-hydroxybutyryl-CoA dehydrogenase
198	 67.76	0	239898..241091	-	397	115360515	-	Bamb_5771	-	beta-ketothiolase
199	 65.35	0	241140..242813	-	557	115360516	-	Bamb_5772	-	electron-transferring-flavoprotein dehydrogenase
200	 67.28	0	242848..244638	-	596	115360517	-	Bamb_5773	-	acyl-CoA dehydrogenase domain-containing protein
201	 68.41	0	245124..246041	-	305	115360518	-	Bamb_5774	-	LysR family transcriptional regulator
202	 66.54	0	246180..246944	+	254	115360519	-	Bamb_5775	-	short-chain dehydrogenase/reductase SDR
203	 64.55	0	247019..247726	+	235	115360520	-	Bamb_5776	-	pirin domain-containing protein
204	 65.14	0	247966..248556	+	196	115360521	-	Bamb_5777	-	putative transcriptional regulator protein
205	 68.14	0	249076..250707	+	543	115360522	pntA	Bamb_5778	-	NAD(P) transhydrogenase subunit alpha
206	 66.03	0	250721..252133	+	470	115360523	-	Bamb_5779	-	NAD(P) transhydrogenase, beta subunit
207	 66.01	0	252243..253316	+	357	115360524	-	Bamb_5780	-	dihydrokaempferol 4-reductase
208	 67.43	0	253474..254520	-	348	115360525	-	Bamb_5781	-	AraC family transcriptional regulator
209	 68.56	0	254640..256274	-	544	115360526	-	Bamb_5782	-	AMP-dependent synthetase and ligase
210	 71.12	+1	256593..257693	+	366	115360527	-	Bamb_5783	-	AraC family transcriptional regulator
211	 71.55	+1	257720..259213	-	497	115360528	-	Bamb_5784	-	periplasmic sensor signal transduction histidine kinase
212	 68.75	0	259213..259932	-	239	115360529	-	Bamb_5785	-	two component transcriptional regulator
213	 64.16	0	260229..261266	-	345	115360530	-	Bamb_5786	-	LysR family transcriptional regulator
214	 68.82	0	261351..262094	-	247	115360531	-	Bamb_5787	-	NmrA family protein
215	 69.82	0	262300..263790	+	496	115360532	-	Bamb_5788	-	GntR family transcriptional regulator
216	 66.07	0	264080..264580	+	166	115360533	-	Bamb_5789	-	OsmC family protein
217	 59.38	-1	264701..265702	+	333	115360534	-	Bamb_5790	-	membrane protein-like protein
218	 64.09	0	265788..267341	-	517	115360535	-	Bamb_5791	-	EmrB/QacA family drug resistance transporter
219	 62.86	0	267444..267758	-	104	115360536	-	Bamb_5792	-	hypothetical protein
220	 66.87	0	267879..268379	+	166	115360537	-	Bamb_5793	-	OsmC family protein
221	 60.62	-1	268559..269038	+	159	115360538	-	Bamb_5794	-	alkylhydroperoxidase
66.16	MEAN

4.31	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.