IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.16   STD DEV: 4.31
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472
1013 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
86	 69.07	0	95545..95877	-	110	115360403	-	Bamb_5659	-	hypothetical protein
87	 70.15	0	95906..97111	-	401	115360404	-	Bamb_5660	-	alcohol dehydrogenase
88	 71.93	+1	97297..98835	-	512	115360405	-	Bamb_5661	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
89	 64.00	0	99129..100553	-	474	115360406	-	Bamb_5662	-	GntR family transcriptional regulator
90	 68.42	0	101139..101594	-	151	115360407	-	Bamb_5663	-	membrane protein
91	 66.89	0	101758..102210	-	150	115360408	-	Bamb_5664	-	phosphate-starvation-inducible E
92	 68.25	0	102731..103801	+	356	115360409	-	Bamb_5665	-	Dyp-type peroxidase family protein
93	 71.08	+1	103794..104609	+	271	115360410	-	Bamb_5666	-	Linocin_M18 bacteriocin protein
94	 61.48	-1	104710..104979	+	89	115360411	-	Bamb_5667	-	hypothetical protein
95	 66.60	0	105470..108331	+	953	115360412	-	Bamb_5668	-	ATPase
96	 67.32	0	108429..110708	+	759	115360413	-	Bamb_5669	-	oxidoreductase alpha (molybdopterin) subunit
97	 66.67	0	110845..112266	-	473	115360414	-	Bamb_5670	-	permease for cytosine/purines, uracil, thiamine, allantoin
98	 65.70	0	112614..113543	+	309	115360415	-	Bamb_5671	-	LysR family transcriptional regulator
99	 68.38	0	113602..114765	-	387	115360416	-	Bamb_5672	-	acetylornithine deacetylase
100	 72.57	+1	114758..115435	-	225	115360417	-	Bamb_5673	-	hypothetical protein
101	 63.01	0	115444..115881	-	145	115360418	-	Bamb_5674	-	endoribonuclease L-PSP
102	 69.14	0	116001..117413	-	470	115360419	-	Bamb_5675	-	flavin-containing monooxygenase FMO
103	 58.65	-1	117576..117974	-	132	115360420	-	Bamb_5676	-	hypothetical protein
104	 59.76	-1	117971..118216	-	81	115360421	-	Bamb_5677	-	AbrB family transcriptional regulator
105	 61.48	-1	118367..119485	-	372	115360422	-	Bamb_5678	-	Sel1 domain-containing protein
106	 61.54	-1	119939..120094	+	51	115360423	-	Bamb_5679	-	hypothetical protein
107	 67.85	0	120304..121317	+	337	115360424	-	Bamb_5680	-	tryptophanyl-tRNA synthetase II
108	 52.04	-2	121631..122095	+	154	115360425	-	Bamb_5681	-	hypothetical protein
109	 58.12	-1	122095..122445	+	116	115360426	-	Bamb_5682	-	hypothetical protein
110	 63.95	0	122503..123423	-	306	115360427	-	Bamb_5683	-	hypothetical protein
111	 66.07	0	123524..124531	-	335	115360428	-	Bamb_5684	-	cytochrome d ubiquinol oxidase, subunit II
112	 63.81	0	124535..125935	-	466	115360429	-	Bamb_5685	-	cytochrome bd ubiquinol oxidase, subunit I
113	 72.39	+1	126354..127226	+	290	115360430	-	Bamb_5686	-	formate dehydrogenase family accessory protein FdhD
114	 74.49	+1	127223..128437	+	404	115360431	-	Bamb_5687	-	molybdenum cofactor synthesis domain-containing protein
115	 70.69	+1	128634..129752	+	372	115360432	-	Bamb_5688	-	molybdenum cofactor biosynthesis protein A
116	 66.49	0	129800..130363	+	187	115360433	-	Bamb_5689	-	molybdopterin biosynthesis MoaE
117	 63.95	0	130434..130691	+	85	115360434	-	Bamb_5690	-	thiamineS protein
118	 63.20	0	130756..131418	-	220	115360435	-	Bamb_5691	-	glutathione S-transferase domain-containing protein
119	 66.09	0	132016..134601	+	861	115360436	-	Bamb_5692	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
120	 67.21	0	134727..135650	-	307	115360437	-	Bamb_5693	-	LysR family transcriptional regulator
121	 64.89	0	135718..136335	+	205	115360438	-	Bamb_5694	-	lysine exporter protein LysE/YggA
122	 63.91	0	136487..137611	+	374	115360439	-	Bamb_5695	-	transaminase
123	 64.29	0	137649..139076	-	475	115360440	-	Bamb_5696	-	GntR family transcriptional regulator
124	 71.81	+1	139394..141802	+	802	115360441	-	Bamb_5697	-	hypothetical protein
125	 59.27	-1	141953..143776	+	607	115360442	-	Bamb_5698	-	ATPase
126	 60.47	-1	143780..144424	+	214	115360443	-	Bamb_5699	-	organic radical activating enzyme family protein
127	 62.15	0	144442..150756	+	2104	115360444	-	Bamb_5700	-	serine/threonine protein kinase
128	 61.02	-1	150753..152099	+	448	115360445	-	Bamb_5701	-	hypothetical protein
129	 55.45	-2	152170..152472	-	100	115360446	-	Bamb_5702	-	hypothetical protein
130	 66.45	0	153331..154242	-	303	115360447	-	Bamb_5703	-	hypothetical protein
131	 60.88	-1	154302..154664	-	120	115360448	-	Bamb_5704	-	TfoX domain-containing protein
132	 72.48	+1	154704..156440	-	578	115360449	-	Bamb_5705	-	phage integrase family protein
133	 67.85	0	156540..157805	-	421	115360450	-	Bamb_5706	-	major facilitator transporter
134	 69.33	0	157821..158609	-	262	115360451	-	Bamb_5707	-	PpiC-type peptidyl-prolyl cis-trans isomerase
135	 64.47	0	158619..159302	-	227	115360452	-	Bamb_5708	-	respiratory nitrate reductase, gamma subunit
136	 71.51	+1	159327..160028	-	233	115360453	-	Bamb_5709	-	nitrate reductase molybdenum cofactor assembly chaperone
137	 65.04	0	160025..161560	-	511	115360454	-	Bamb_5710	-	nitrate reductase, beta subunit
138	 66.30	0	161557..165402	-	1281	115360455	-	Bamb_5711	-	nitrate reductase, alpha subunit
139	 67.67	0	165755..166945	+	396	115360456	-	Bamb_5712	-	TPR repeat-containing protein
140	 67.71	0	167052..167243	-	63	115360457	-	Bamb_5713	-	hypothetical protein
141	 68.33	0	167258..167737	-	159	115360458	-	Bamb_5714	-	UspA domain-containing protein
142	 70.60	+1	168002..168763	+	253	115360459	-	Bamb_5715	-	2-keto-4-pentenoate hydratase-like protein
143	 69.35	0	168794..169054	+	86	115360460	-	Bamb_5716	-	hypothetical protein
144	 71.13	+1	169045..170457	+	470	115360461	-	Bamb_5717	-	hypothetical protein
145	 68.95	0	170503..171555	-	350	115360462	-	Bamb_5718	-	AraC family transcriptional regulator
146	 64.22	0	171703..172029	-	108	115360463	-	Bamb_5719	-	hypothetical protein
147	 70.32	0	172061..173566	-	501	115360464	-	Bamb_5720	-	hypothetical protein
148	 69.38	0	173969..176140	+	723	115360465	-	Bamb_5721	-	hypothetical protein
149	 68.64	0	176148..176855	+	235	115360466	-	Bamb_5722	-	hypothetical protein
150	 66.07	0	176937..177773	-	278	115360467	-	Bamb_5723	-	alpha/beta hydrolase fold
151	 67.20	0	178019..178393	+	124	115360468	-	Bamb_5724	-	glyoxalase/bleomycin resistance protein/dioxygenase
152	 68.71	0	178474..179307	-	277	115360469	-	Bamb_5725	-	short chain dehydrogenase
153	 68.00	0	179402..180373	+	323	115360470	-	Bamb_5726	-	AraC family transcriptional regulator
154	 67.52	0	180404..181576	-	390	115360471	-	Bamb_5727	-	aldose 1-epimerase
155	 65.09	0	181755..183083	-	442	115360472	-	Bamb_5728	-	major facilitator transporter
156	 67.88	0	183319..184224	+	301	115360473	-	Bamb_5729	-	2-dehydropantoate 2-reductase
157	 67.00	0	184645..185556	-	303	115360474	-	Bamb_5730	-	putative transmembrane anti-sigma factor
158	 67.21	0	185559..186107	-	182	115360475	-	Bamb_5731	-	ECF subfamily RNA polymerase sigma-24 factor
159	 65.48	0	186310..187155	-	281	115360476	-	Bamb_5732	-	abortive infection protein
160	 68.82	0	187213..187629	-	138	115360477	-	Bamb_5733	-	OsmC family protein
161	 65.85	0	187676..187921	-	81	115360478	-	Bamb_5734	-	hypothetical protein
162	 60.18	-1	188247..188693	+	148	115360479	-	Bamb_5735	-	protein of unknown function DUF861, cupin_3
163	 66.67	0	188784..190037	+	417	115360480	-	Bamb_5736	-	condensation domain-containing protein
164	 68.01	0	190130..191323	-	397	115360481	-	Bamb_5737	-	major facilitator transporter
165	 68.32	0	191496..191918	-	140	115360482	-	Bamb_5738	-	hypothetical protein
166	 67.02	0	191941..192789	-	282	115360483	-	Bamb_5739	-	short-chain dehydrogenase/reductase SDR
167	 68.08	0	193168..194298	-	376	115360484	-	Bamb_5740	-	periplasmic sensor signal transduction histidine kinase
168	 67.97	0	194434..194817	-	127	115360485	-	Bamb_5741	-	response regulator receiver protein
169	 63.64	0	195045..195704	-	219	115360486	-	Bamb_5742	-	two component LuxR family transcriptional regulator
170	 69.28	0	195822..200879	-	1685	115360487	-	Bamb_5743	-	ATPase domain-containing protein
171	 63.72	0	201242..201817	+	191	115360488	-	Bamb_5744	-	hypothetical protein
172	 66.46	0	202015..202500	+	161	115360489	-	Bamb_5745	-	hypothetical protein
173	 64.85	0	202577..203017	-	146	115360490	-	Bamb_5746	-	hypothetical protein
174	 63.08	0	203114..203503	-	129	115360491	-	Bamb_5747	-	hypothetical protein
175	 67.23	0	203742..205154	-	470	115360492	-	Bamb_5748	-	GAF sensor signal transduction histidine kinase
176	 59.88	-1	205487..206164	+	225	115360493	-	Bamb_5749	-	TetR family transcriptional regulator
177	 72.16	+1	206222..207076	+	284	115360494	-	Bamb_5750	-	molybdopterin dehydrogenase, FAD-binding
178	 69.32	0	207057..209879	+	940	115360495	-	Bamb_5751	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
179	 64.55	0	209907..211184	+	425	115360496	-	Bamb_5752	-	major facilitator transporter
180	 66.67	0	211225..212004	-	259	115360497	-	Bamb_5753	-	GCN5-related N-acetyltransferase
181	 67.46	0	212154..215663	-	1169	115360498	-	Bamb_5754	-	pyruvate carboxylase
182	 64.37	0	216021..217022	-	333	115360499	-	Bamb_5755	-	LysR family transcriptional regulator
183	 67.80	0	217440..218933	-	497	115360500	-	Bamb_5756	-	betaine-aldehyde dehydrogenase
184	 68.09	0	218950..220281	-	443	115360501	-	Bamb_5757	-	FAD dependent oxidoreductase
185	 66.10	0	220288..221175	-	295	115360502	-	Bamb_5758	-	dihydrodipicolinate synthetase
66.16	MEAN

4.31	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.