version 1.0
Burkholderia cepacia AMMD chromosome 3, complete sequence - 1..1281472 1013 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 63.15 0 82..906 - 274 115360318 - Bamb_5574 - IclR family transcriptional regulator 2 59.08 -1 1061..1825 + 254 115360319 - Bamb_5575 - extracellular solute-binding protein 3 59.67 -1 1855..2511 + 218 115360320 - Bamb_5576 - polar amino acid ABC transporter, inner membrane subunit 4 62.12 0 2508..3254 + 248 115360321 - Bamb_5577 - ABC transporter related 5 64.20 0 3263..4561 + 432 115360322 - Bamb_5578 - FAD dependent oxidoreductase 6 69.51 0 5095..6573 + 492 115360323 - Bamb_5579 - benzaldehyde dehydrogenase (NAD(+)) 7 69.77 0 6588..7715 + 375 115360324 - Bamb_5580 - alcohol dehydrogenase 8 71.11 +1 7884..9053 + 389 115360325 - Bamb_5581 - helix-turn-helix, Fis-type 9 68.37 0 9358..10590 - 410 115360326 - Bamb_5582 - sugar efflux transporter 10 68.00 0 10736..11410 + 224 115360327 - Bamb_5583 - HAD family hydrolase 11 69.55 0 11531..11773 - 80 115360328 - Bamb_5584 - hypothetical protein 12 68.25 0 11974..12669 + 231 115360329 - Bamb_5585 - MgtC/SapB transporter 13 69.91 0 12666..13004 + 112 115360330 - Bamb_5586 - hypothetical protein 14 71.53 +1 13001..15220 + 739 115360331 - Bamb_5587 - phospholipase D/transphosphatidylase 15 72.84 +1 15211..16020 + 269 115360332 - Bamb_5588 - endonuclease/exonuclease/phosphatase 16 69.94 0 16033..16521 + 162 115360333 - Bamb_5589 - hypothetical protein 17 71.53 +1 16822..20232 + 1136 115360334 - Bamb_5590 - alpha amylase, catalytic region 18 69.01 0 20229..23642 + 1137 115360335 - Bamb_5591 - trehalose synthase 19 70.39 0 23639..25840 + 733 115360336 - Bamb_5592 - glycogen branching enzyme 20 69.31 0 25875..27989 + 704 115360337 - Bamb_5593 - glycogen debranching enzyme GlgX 21 71.21 +1 27999..29870 + 623 115360338 - Bamb_5594 - malto-oligosyltrehalose trehalohydrolase 22 74.28 +1 29867..32098 + 743 115360339 - Bamb_5595 - 4-alpha-glucanotransferase 23 72.79 +1 32095..34869 + 924 115360340 - Bamb_5596 - malto-oligosyltrehalose synthase 24 61.77 -1 34938..35366 - 142 115360341 - Bamb_5597 - GCN5-related N-acetyltransferase 25 65.01 0 35405..36127 - 240 115360342 - Bamb_5598 - NADPH-dependent FMN reductase 26 66.12 0 36148..37254 - 368 115360343 - Bamb_5599 - bile acid:sodium symporter 27 67.88 0 37285..37779 - 164 115360344 - Bamb_5600 - protein tyrosine phosphatase 28 67.86 0 37802..38137 - 111 115360345 - Bamb_5601 - ArsR family transcriptional regulator 29 66.83 0 38631..39878 + 415 115360346 - Bamb_5602 - phosphatidylserine decarboxylase-related 30 65.24 0 39940..40149 - 69 115360347 - Bamb_5603 - hypothetical protein 31 69.30 0 40420..40761 - 113 115360348 - Bamb_5604 - hypothetical protein 32 68.67 0 40765..41313 - 182 115360349 - Bamb_5605 - PfpI family intracellular peptidase 33 66.39 0 41555..41920 - 121 115360350 - Bamb_5606 - hypothetical protein 34 75.37 +2 42012..42551 - 179 115360351 - Bamb_5607 - hypothetical protein 35 66.39 0 42576..42932 + 118 115360352 - Bamb_5608 - hypothetical protein 36 70.36 0 42975..44300 + 441 115360353 - Bamb_5609 - sodium/hydrogen exchanger 37 70.28 0 44306..47104 - 932 115360354 - Bamb_5610 - ATP dependent DNA ligase 38 67.16 0 47129..48136 - 335 115360355 - Bamb_5611 - Ku domain-containing protein 39 68.37 0 48194..50302 - 702 115360356 katE Bamb_5612 - hydroperoxidase II 40 68.99 0 50463..50849 - 128 115360357 - Bamb_5613 - hypothetical protein 41 58.64 -1 50846..51007 - 53 115360358 - Bamb_5614 - hypothetical protein 42 62.84 0 51062..51244 - 60 115360359 - Bamb_5615 - hypothetical protein 43 68.40 0 51314..52753 - 479 115360360 - Bamb_5616 - RNA polymerase factor sigma-54 44 74.76 +1 53175..53483 - 102 115360361 - Bamb_5617 - hypothetical protein 45 68.59 0 53533..53844 - 103 115360362 - Bamb_5618 - hypothetical protein 46 66.34 0 54567..54872 - 101 115360363 - Bamb_5619 - hypothetical protein 47 68.25 0 55018..55269 + 83 115360364 - Bamb_5620 - hypothetical protein 48 65.05 0 55364..55795 + 143 115360365 - Bamb_5621 - CBS domain-containing protein 49 66.25 0 55886..56368 + 160 115360366 - Bamb_5622 - PRC-barrel domain-containing protein 50 67.05 0 56623..57918 + 431 115360367 - Bamb_5623 - major facilitator superfamily metabolite/H(+) symporter 51 65.48 0 57925..58764 + 279 115360368 - Bamb_5624 - extracellular solute-binding protein 52 68.78 0 58790..60112 - 440 115360369 - Bamb_5625 - sodium:dicarboxylate symporter 53 68.24 0 60165..61115 - 316 115360370 - Bamb_5626 - LysR family transcriptional regulator 54 67.23 0 61170..62063 - 297 115360371 - Bamb_5627 - LysR family transcriptional regulator 55 68.56 0 62286..62549 + 87 115360372 - Bamb_5628 - hypothetical protein 56 73.00 +1 62597..63811 + 404 115360373 - Bamb_5629 - major facilitator transporter 57 70.23 0 63897..64373 - 158 115360374 - Bamb_5630 - response regulator receiver protein 58 74.62 +1 64607..65260 + 217 115360375 - Bamb_5631 - phage SPO1 DNA polymerase-related protein 59 68.16 0 65668..66807 + 379 115360376 - Bamb_5632 - natural resistance-associated macrophage protein 60 65.03 0 66958..67569 - 203 115360377 - Bamb_5633 - hypothetical protein 61 70.42 0 67629..68240 - 203 115360378 - Bamb_5634 - hypothetical protein 62 67.95 0 68269..69126 - 285 115360379 - Bamb_5635 - short-chain dehydrogenase/reductase SDR 63 72.95 +1 69257..69829 - 190 115360380 - Bamb_5636 - hypothetical protein 64 66.33 0 69918..70217 - 99 115360381 - Bamb_5637 - hypothetical protein 65 69.87 0 70257..71285 - 342 115360382 - Bamb_5638 - short chain dehydrogenase 66 68.40 0 71313..71717 - 134 115360383 - Bamb_5639 - transport-associated 67 71.22 +1 71960..73276 + 438 115360384 - Bamb_5640 - glycosyl transferase, group 1 68 67.52 0 73273..74322 + 349 115360385 - Bamb_5641 - NAD-dependent epimerase/dehydratase 69 71.48 +1 74350..76656 - 768 115360386 - Bamb_5642 - multi-sensor hybrid histidine kinase 70 70.62 +1 76797..77504 + 235 115360387 - Bamb_5643 - hypothetical protein 71 73.16 +1 77483..78406 + 307 115360388 - Bamb_5644 - glycosyl transferase family protein 72 67.03 0 78424..79791 - 455 115360389 - Bamb_5645 - two component, sigma54 specific, Fis family transcriptional regulator 73 66.95 0 80141..81211 + 356 115360390 - Bamb_5646 - sigma-54 dependent trancsriptional regulator 74 66.67 0 81261..82211 - 316 115360391 - Bamb_5647 - glycosyl transferase, group 1 75 71.03 +1 82201..83277 - 358 115360392 - Bamb_5648 - glycosyl transferase family protein 76 72.06 +1 83274..84275 - 333 115360393 - Bamb_5649 - glycosyl transferase family protein 77 69.42 0 84272..86017 - 581 115360394 - Bamb_5650 - carbamoyltransferase 78 73.48 +1 86021..87223 - 400 115360395 - Bamb_5651 - glycosyl transferase family protein 79 71.24 +1 87220..87831 - 203 115360396 - Bamb_5652 - histidinol-phosphate phosphatase family protein 80 70.24 0 87822..88577 - 251 115360397 - Bamb_5653 - short-chain dehydrogenase/reductase SDR 81 70.29 0 88759..89172 - 137 115360398 - Bamb_5654 - hypothetical protein 82 70.51 +1 89228..92035 - 935 115360399 - Bamb_5655 - response regulator receiver protein 83 71.86 +1 92083..92949 - 288 115360400 - Bamb_5656 - transport-associated 84 72.95 +1 93224..93589 - 121 115360401 - Bamb_5657 - hypothetical protein 85 69.06 0 93883..95469 + 528 115360402 - Bamb_5658 - PAS/PAC sensor hybrid histidine kinase 86 69.07 0 95545..95877 - 110 115360403 - Bamb_5659 - hypothetical protein 87 70.15 0 95906..97111 - 401 115360404 - Bamb_5660 - alcohol dehydrogenase 88 71.93 +1 97297..98835 - 512 115360405 - Bamb_5661 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 89 64.00 0 99129..100553 - 474 115360406 - Bamb_5662 - GntR family transcriptional regulator 90 68.42 0 101139..101594 - 151 115360407 - Bamb_5663 - membrane protein 91 66.89 0 101758..102210 - 150 115360408 - Bamb_5664 - phosphate-starvation-inducible E 92 68.25 0 102731..103801 + 356 115360409 - Bamb_5665 - Dyp-type peroxidase family protein 93 71.08 +1 103794..104609 + 271 115360410 - Bamb_5666 - Linocin_M18 bacteriocin protein 94 61.48 -1 104710..104979 + 89 115360411 - Bamb_5667 - hypothetical protein 95 66.60 0 105470..108331 + 953 115360412 - Bamb_5668 - ATPase 96 67.32 0 108429..110708 + 759 115360413 - Bamb_5669 - oxidoreductase alpha (molybdopterin) subunit 97 66.67 0 110845..112266 - 473 115360414 - Bamb_5670 - permease for cytosine/purines, uracil, thiamine, allantoin 98 65.70 0 112614..113543 + 309 115360415 - Bamb_5671 - LysR family transcriptional regulator 99 68.38 0 113602..114765 - 387 115360416 - Bamb_5672 - acetylornithine deacetylase 100 72.57 +1 114758..115435 - 225 115360417 - Bamb_5673 - hypothetical protein 66.16 MEAN 4.31 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.