IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
934	 69.99	0	1073780..1074802	+	340	115358904	-	Bamb_4155	-	LacI family transcription regulator
935	 69.45	0	1074812..1075672	-	286	115358905	-	Bamb_4156	-	binding-protein-dependent transport systems inner membrane component
936	 68.62	0	1075669..1076538	-	289	115358906	-	Bamb_4157	-	binding-protein-dependent transport systems inner membrane component
937	 69.28	0	1076573..1077913	-	446	115358907	-	Bamb_4158	-	extracellular solute-binding protein
938	 68.62	0	1077976..1079205	-	409	115358908	-	Bamb_4159	-	porin
939	 68.90	0	1079356..1080294	-	312	115358909	-	Bamb_4160	-	AraC family transcriptional regulator
940	 75.30	+2	1080355..1080945	-	196	115358910	-	Bamb_4161	-	hypothetical protein
941	 69.13	0	1080942..1082444	-	500	115358911	-	Bamb_4162	-	amino acid permease-associated region
942	 67.11	0	1082718..1084058	-	446	115358912	-	Bamb_4163	-	hypothetical protein
943	 69.33	0	1084131..1085633	-	500	115358913	-	Bamb_4164	-	betaine-aldehyde dehydrogenase
944	 64.10	0	1086055..1086717	-	220	115358914	-	Bamb_4165	-	hypothetical protein
945	 68.17	0	1086769..1087500	-	243	115358915	-	Bamb_4166	-	LuxR family transcriptional regulator
946	 67.47	0	1087658..1088533	-	291	115358916	-	Bamb_4167	-	protein of unknown function, zinc metallopeptidase putative
947	 65.17	0	1088627..1088893	+	88	115358917	-	Bamb_4168	-	hypothetical protein
948	 74.12	+1	1088974..1089765	+	263	115358918	-	Bamb_4169	-	short-chain dehydrogenase/reductase SDR
949	 70.38	0	1089971..1091020	+	349	115358919	-	Bamb_4170	-	LysR family transcriptional regulator
950	 71.83	+1	1091120..1091797	+	225	115358920	-	Bamb_4171	-	hypothetical protein
951	 70.45	0	1091886..1093205	+	439	115358921	-	Bamb_4172	-	major facilitator transporter
952	 69.23	0	1093255..1093956	+	233	115358922	-	Bamb_4173	-	hypothetical protein
953	 72.17	+1	1094033..1095013	-	326	115358923	-	Bamb_4174	-	NAD-dependent epimerase/dehydratase
954	 71.33	+1	1095113..1096012	+	299	115358924	-	Bamb_4175	-	LysR family transcriptional regulator
955	 71.94	+1	1096050..1096922	-	290	115358925	-	Bamb_4176	-	LysR family transcriptional regulator
956	 72.07	+1	1097079..1098539	+	486	115358926	-	Bamb_4177	-	major facilitator transporter
957	 64.72	0	1098937..1099347	+	136	115358927	-	Bamb_4178	-	endoribonuclease L-PSP
958	 71.43	+1	1099380..1100093	-	237	115358928	-	Bamb_4179	-	short chain dehydrogenase
959	 64.14	0	1100406..1101116	+	236	115358929	-	Bamb_4180	-	hypothetical protein
960	 71.85	+1	1101207..1102016	-	269	115358930	-	Bamb_4181	-	3-ketoacyl-(acyl-carrier-protein) reductase
961	 67.99	0	1102013..1102846	-	277	115358931	-	Bamb_4182	-	hypothetical protein
962	 71.45	+1	1103017..1103811	+	264	115358932	-	Bamb_4183	-	AraC family transcriptional regulator
963	 72.60	+1	1104171..1105130	+	319	115358933	-	Bamb_4184	-	hypothetical protein
964	 64.57	0	1105256..1105828	+	190	115358934	-	Bamb_4185	-	hypothetical protein
965	 61.48	-1	1105928..1106062	-	44	115358935	-	Bamb_4186	-	entericidin EcnAB
966	 64.89	0	1106298..1107593	+	431	115358936	-	Bamb_4187	-	aspartate carbamoyltransferase
967	 65.48	0	1107730..1108149	-	139	115358937	-	Bamb_4188	-	PilT domain-containing protein
968	 63.41	0	1108146..1108421	-	91	115358938	-	Bamb_4189	-	plasmid stability protein-like protein
969	 65.55	0	1108706..1110949	+	747	115358939	-	Bamb_4190	-	TonB-dependent siderophore receptor
970	 71.16	+1	1110953..1111708	+	251	115358940	-	Bamb_4191	-	Sel1 domain-containing protein
971	 63.60	0	1111705..1112388	+	227	115358941	-	Bamb_4192	-	putative hydroxylase
972	 61.67	-1	1112488..1112727	+	79	115358942	-	Bamb_4193	-	hypothetical protein
973	 67.42	0	1112724..1113119	+	131	115358943	-	Bamb_4194	-	PilT domain-containing protein
974	 71.28	+1	1113489..1114073	+	194	115358944	-	Bamb_4195	-	MobA-like protein-like protein
975	 69.30	0	1114536..1115294	-	252	115358945	-	Bamb_4196	-	short chain dehydrogenase
976	 69.51	0	1115291..1116838	-	515	115358946	-	Bamb_4197	-	xylulokinase
977	 65.93	0	1116870..1117958	-	362	115358947	-	Bamb_4198	-	alcohol dehydrogenase
978	 66.37	0	1118008..1119021	-	337	115358948	-	Bamb_4199	-	inner-membrane translocator
979	 67.04	0	1119008..1120594	-	528	115358949	-	Bamb_4200	-	ABC transporter related
980	 67.19	0	1120591..1121544	-	317	115358950	-	Bamb_4201	-	periplasmic binding protein/LacI transcriptional regulator
981	 67.40	0	1121661..1122620	-	319	115358951	-	Bamb_4202	-	AraC family transcriptional regulator
982	 71.52	+1	1122871..1123818	-	315	115358952	-	Bamb_4203	-	2-dehydropantoate 2-reductase
983	 67.25	0	1124075..1125628	+	517	115358953	-	Bamb_4204	-	methyl-accepting chemotaxis sensory transducer
984	 66.67	0	1125904..1126581	-	225	115358954	-	Bamb_4205	-	two component LuxR family transcriptional regulator
985	 66.26	0	1126942..1127433	+	163	115358955	-	Bamb_4206	-	hypothetical protein
986	 68.27	0	1127803..1129236	-	477	115358956	-	Bamb_4207	-	sigma-54 dependent trancsriptional regulator
987	 60.82	-1	1129605..1130117	+	170	115358957	-	Bamb_4208	-	hypothetical protein
988	 68.72	0	1130185..1131111	-	308	115358958	-	Bamb_4209	-	AraC family transcriptional regulator
989	 68.83	0	1131293..1131754	+	153	115358959	-	Bamb_4210	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
990	 70.51	0	1131757..1133967	+	736	115358960	-	Bamb_4211	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
991	 59.84	-1	1134076..1135350	-	424	115358961	-	Bamb_4212	-	filamentation induced by cAMP protein Fic
992	 61.40	-1	1135718..1136116	+	132	115358962	-	Bamb_4213	-	response regulator receiver protein
993	 74.52	+1	1136505..1137650	+	381	115358963	-	Bamb_4214	-	type III secretion system apparatus protein YscQ/HrcQ
994	 65.48	0	1137654..1138328	+	224	115358964	-	Bamb_4215	-	type III secretion system protein
995	 72.01	+1	1138325..1139128	+	267	115358965	-	Bamb_4216	-	lytic transglycosylase, catalytic
996	 70.12	0	1139201..1141168	-	655	115358966	-	Bamb_4217	-	asparagine synthase (glutamine-hydrolyzing)
997	 60.08	-1	1141178..1141435	-	85	115358967	-	Bamb_4218	-	hypothetical protein
998	 67.73	0	1141414..1142445	-	343	115358968	-	Bamb_4219	-	type III secretion exporter
999	 67.28	0	1142470..1143279	-	269	115358969	-	Bamb_4220	-	type III secretion protein SpaR/YscT/HrcT
1000	 74.30	+1	1143273..1143953	-	226	115358970	-	Bamb_4221	-	hypothetical protein
1001	 69.84	0	1143946..1145331	-	461	115358971	-	Bamb_4222	-	type III secretion apparatus H+-transporting two-sector ATPase
1002	 70.00	0	1145328..1145957	-	209	115358972	-	Bamb_4223	-	HrpE/YscL family type III secretion apparatus protein
1003	 72.20	+1	1145939..1146679	-	246	115358973	-	Bamb_4224	-	hypothetical protein
1004	 71.94	+1	1146676..1147605	-	309	115358974	-	Bamb_4225	-	YscJ/HrcJ family type III secretion apparatus lipoprotein
1005	 68.55	0	1147684..1148214	-	176	115358975	-	Bamb_4226	-	hypothetical protein
1006	 72.99	+1	1148661..1150019	-	452	115358976	-	Bamb_4227	-	YscD/HrpQ family type III secretion apparatus protein
1007	 67.45	0	1150000..1152045	-	681	115358977	-	Bamb_4228	-	YscC/HrcC family type III secretion outer membrane protein
1008	 65.23	0	1152045..1152323	-	92	115358978	-	Bamb_4229	-	HrpO family type III secretion protein
1009	 69.73	0	1152320..1154569	-	749	115358979	-	Bamb_4230	-	type III secretion FHIPEP protein
1010	 64.63	0	1154763..1155596	-	277	115358980	-	Bamb_4231	-	LuxR family transcriptional regulator
1011	 66.67	0	1155876..1156781	+	301	115358981	-	Bamb_4232	-	LuxR family transcriptional regulator
1012	 67.09	0	1156860..1158506	-	548	115358982	-	Bamb_4233	-	natural resistance-associated macrophage protein
1013	 66.32	0	1158545..1158832	+	95	115358983	-	Bamb_4234	-	hypothetical protein
1014	 71.06	+1	1159810..1160082	+	90	115358984	-	Bamb_4235	-	hypothetical protein
1015	 69.57	0	1160194..1161672	+	492	115358985	-	Bamb_4236	-	carbohydrate-selective porin OprB
1016	 68.32	0	1161766..1163520	-	584	115358986	-	Bamb_4237	-	Alpha,alpha-trehalase
1017	 67.66	0	1163813..1165228	+	471	115358987	-	Bamb_4238	-	major facilitator transporter
1018	 68.56	0	1165577..1166788	+	403	115358988	-	Bamb_4239	-	hypothetical protein
1019	 61.64	-1	1166891..1167109	-	72	115358989	-	Bamb_4240	-	hypothetical protein
1020	 66.44	0	1167165..1167608	-	147	115358990	-	Bamb_4241	-	GCN5-related N-acetyltransferase
1021	 67.44	0	1167736..1168380	+	214	115358991	-	Bamb_4242	-	hydrolase
1022	 65.97	0	1168793..1169365	+	190	115358992	-	Bamb_4243	-	hypothetical protein
1023	 64.00	0	1169483..1170082	-	199	115358993	-	Bamb_4244	-	GCN5-related N-acetyltransferase
1024	 70.16	0	1170193..1171107	-	304	115358994	-	Bamb_4245	-	DNA-binding transcriptional regulator LysR
1025	 67.47	0	1171217..1172455	+	412	115358995	-	Bamb_4246	-	diaminopimelate decarboxylase
1026	 59.45	-1	1172822..1173874	-	350	115358996	-	Bamb_4247	-	IS605 family transposase OrfB
1027	 65.67	0	1174202..1175002	+	266	115358997	-	Bamb_4248	-	extracellular solute-binding protein
1028	 67.27	0	1175077..1175736	+	219	115358998	-	Bamb_4249	-	polar amino acid ABC transporter, inner membrane subunit
1029	 63.70	0	1175733..1176506	+	257	115358999	-	Bamb_4250	-	ABC transporter related
1030	 69.53	0	1176556..1177743	+	395	115359000	-	Bamb_4251	-	cystathionine beta-lyase
1031	 66.67	0	1177822..1178166	+	114	115359001	-	Bamb_4252	-	hypothetical protein
1032	 68.12	0	1178599..1178943	+	114	115359002	-	Bamb_4253	-	hypothetical protein
1033	 73.39	+1	1178945..1179985	+	346	115359003	-	Bamb_4254	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.