IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
831	 68.35	0	970616..972283	+	555	115358801	-	Bamb_4052	-	hypothetical protein
832	 48.69	-2	972473..973696	+	407	115358802	-	Bamb_4053	-	hypothetical protein
833	 49.04	-2	973786..974097	+	103	115358803	-	Bamb_4054	-	hypothetical protein
834	 69.49	0	974235..975794	-	519	115358804	-	Bamb_4055	-	methyl-accepting chemotaxis sensory transducer
835	 69.15	0	976008..977537	+	509	115358805	-	Bamb_4056	-	EmrB/QacA family drug resistance transporter
836	 74.27	+1	977631..978629	-	332	115358806	-	Bamb_4057	-	alcohol dehydrogenase
837	 74.48	+1	978755..979675	+	306	115358807	-	Bamb_4058	-	LysR family transcriptional regulator
838	 71.63	+1	979705..980328	+	207	115358808	-	Bamb_4059	-	GCN5-related N-acetyltransferase
839	 67.84	0	980338..981186	+	282	115358809	-	Bamb_4060	-	MerR family transcriptional regulator
840	 67.48	0	981311..982291	+	326	115358810	-	Bamb_4061	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
841	 65.78	0	982383..983288	-	301	115358811	-	Bamb_4062	-	LysR family transcriptional regulator
842	 64.97	0	983407..983997	+	196	115358812	-	Bamb_4063	-	hypothetical protein
843	 55.88	-2	984325..984528	+	67	115358813	-	Bamb_4064	-	cold-shock DNA-binding domain-containing protein
844	 55.71	-2	984812..985021	+	69	115358814	-	Bamb_4065	-	hypothetical protein
845	 66.25	0	985077..986045	-	322	115358815	-	Bamb_4066	-	agmatinase
846	 71.88	+1	986417..987088	+	223	115358816	-	Bamb_4067	-	YhhN family protein
847	 67.04	0	987335..988924	+	529	115358817	-	Bamb_4068	-	flavin-containing monooxygenase FMO
848	 66.56	0	988946..989884	+	312	115358818	-	Bamb_4069	-	short-chain dehydrogenase/reductase SDR
849	 64.35	0	989881..990786	+	301	115358819	-	Bamb_4070	-	metal-dependent hydrolase
850	 71.60	+1	990791..991723	+	310	115358820	-	Bamb_4071	-	alpha/beta hydrolase fold
851	 67.21	0	991684..992238	-	184	115358821	-	Bamb_4072	-	hypothetical protein
852	 71.60	+1	992421..993311	+	296	115358822	-	Bamb_4073	-	Urea transporter
853	 68.98	0	993286..994062	+	258	115358823	-	Bamb_4074	-	hypothetical protein
854	 62.43	-1	994123..994311	+	62	115358824	-	Bamb_4075	-	4-oxalocrotonate tautomerase
855	 58.56	-2	994417..994638	+	73	115358825	-	Bamb_4076	-	putative cytoplasmic protein
856	 68.50	0	994790..999631	+	1613	115358826	-	Bamb_4077	-	NAD-glutamate dehydrogenase
857	 71.43	+1	999647..1000528	-	293	115358827	-	Bamb_4078	-	putative methyltransferase
858	 65.24	0	1000539..1000889	-	116	115358828	-	Bamb_4079	-	hypothetical protein
859	 61.36	-1	1000891..1001154	-	87	115358829	-	Bamb_4080	-	hypothetical protein
860	 68.59	0	1001174..1002007	-	277	115358830	-	Bamb_4081	-	N-hydroxyarylamine O-acetyltransferase
861	 70.85	0	1002134..1002826	-	230	115358831	-	Bamb_4082	-	hypothetical protein
862	 70.51	0	1003073..1004557	-	494	115358832	-	Bamb_4083	-	amidase
863	 65.52	0	1004955..1005389	+	144	115358833	-	Bamb_4084	-	hypothetical protein
864	 66.27	0	1006063..1006311	+	82	115358834	-	Bamb_4085	-	hypothetical protein
865	 66.36	0	1007002..1008291	+	429	115358835	-	Bamb_4086	-	natural resistance-associated macrophage protein
866	 66.98	0	1008374..1009636	+	420	115358836	-	Bamb_4087	-	hypothetical protein
867	 67.91	0	1009676..1010077	-	133	115358837	-	Bamb_4088	-	hypothetical protein
868	 71.55	+1	1010193..1011215	-	340	115358838	-	Bamb_4089	-	oxidoreductase FAD/NAD(P)-binding subunit
869	 68.88	0	1011229..1012896	-	555	115358839	-	Bamb_4090	-	hydroxylamine reductase
870	 65.40	0	1013090..1013326	-	78	115358840	-	Bamb_4091	-	hypothetical protein
871	 68.24	0	1013508..1014908	-	466	115358841	-	Bamb_4092	-	major facilitator transporter
872	 69.56	0	1014937..1016181	-	414	115358842	-	Bamb_4093	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
873	 67.29	0	1016178..1017140	-	320	115358843	-	Bamb_4094	-	glyoxalase/bleomycin resistance protein/dioxygenase
874	 68.54	0	1017159..1018649	-	496	115358844	-	Bamb_4095	-	betaine-aldehyde dehydrogenase
875	 70.53	0	1018748..1019575	-	275	115358845	-	Bamb_4096	-	L-aspartate dehydrogenase
876	 68.41	0	1019568..1021235	-	555	115358846	-	Bamb_4097	-	hypothetical protein
877	 67.17	0	1021228..1022025	-	265	115358847	-	Bamb_4098	-	short chain dehydrogenase
878	 66.55	0	1022022..1022879	-	285	115358848	-	Bamb_4099	-	IclR family transcriptional regulator
879	 72.48	+1	1022876..1023787	-	303	115358849	-	Bamb_4100	-	alpha/beta hydrolase fold
880	 64.96	0	1023807..1024334	-	175	115358850	-	Bamb_4101	-	cupin 2 domain-containing protein
881	 71.08	+1	1024374..1025144	-	256	115358851	-	Bamb_4102	-	short chain dehydrogenase
882	 66.85	0	1025137..1026207	-	356	115358852	-	Bamb_4103	-	Rieske (2Fe-2S) domain-containing protein
883	 66.03	0	1026262..1026573	-	103	115358853	-	Bamb_4104	-	hypothetical protein
884	 65.41	0	1026575..1026892	-	105	115358854	-	Bamb_4105	-	Rieske (2Fe-2S) domain-containing protein
885	 65.19	0	1027343..1028422	+	359	115358855	-	Bamb_4106	-	porin
886	 69.21	0	1028524..1029468	-	314	115358856	-	Bamb_4107	-	IclR family transcriptional regulator
887	 65.22	0	1029826..1030032	-	68	115358857	-	Bamb_4108	-	hypothetical protein
888	 68.65	0	1030361..1030966	-	201	115358858	-	Bamb_4109	-	2OG-Fe(II) oxygenase
889	 69.97	0	1031188..1032339	-	383	115358859	-	Bamb_4110	-	metallophosphoesterase
890	 69.51	0	1032708..1033094	+	128	115358860	-	Bamb_4111	-	hypothetical protein
891	 70.00	0	1033091..1034140	+	349	115358861	-	Bamb_4112	-	multidrug resistance protein MdtN
892	 71.37	+1	1034121..1036160	+	679	115358862	-	Bamb_4113	-	fusaric acid resistance protein region
893	 71.79	+1	1036147..1037706	+	519	115358863	-	Bamb_4114	-	outer membrane efflux protein
894	 66.53	0	1038060..1038767	+	235	115358864	-	Bamb_4115	-	MgtC/SapB transporter
895	 63.75	0	1038825..1039544	-	239	115358865	-	Bamb_4116	-	LuxR family transcriptional regulator
896	 69.14	0	1039618..1040061	+	147	115358866	-	Bamb_4117	-	hypothetical protein
897	 66.67	0	1040235..1040876	+	213	115358867	-	Bamb_4118	-	autoinducer synthesis protein
898	 71.56	+1	1040954..1041688	+	244	115358868	-	Bamb_4119	-	hypothetical protein
899	 64.63	0	1041944..1042435	+	163	115358869	-	Bamb_4120	-	hypothetical protein
900	 67.58	0	1042636..1042965	-	109	115358870	-	Bamb_4121	-	hypothetical protein
901	 65.13	0	1042983..1043633	-	216	115358871	-	Bamb_4122	-	GTP cyclohydrolase II
902	 60.61	-1	1043811..1044272	+	153	115358872	-	Bamb_4123	-	signal-transduction protein
903	 63.64	0	1044425..1044754	-	109	115358873	-	Bamb_4124	-	hypothetical protein
904	 61.40	-1	1045268..1045666	+	132	115358874	-	Bamb_4125	-	GreA/GreB family elongation factor
905	 60.95	-1	1045854..1046972	-	372	115358875	-	Bamb_4126	-	porin
906	 74.93	+1	1047583..1047957	+	124	115358876	-	Bamb_4127	-	hypothetical protein
907	 62.37	-1	1048147..1048239	+	30	115358877	-	Bamb_4128	-	short-chain dehydrogenase/reductase SDR
908	 66.67	0	1048271..1048480	-	69	115358878	-	Bamb_4129	-	hypothetical protein
909	 66.46	0	1048559..1049035	+	158	115358879	-	Bamb_4130	-	MerR family transcriptional regulator
910	 74.02	+1	1049081..1049842	-	253	115358880	-	Bamb_4131	-	short-chain dehydrogenase/reductase SDR
911	 72.81	+1	1049957..1050868	+	303	115358881	-	Bamb_4132	-	LysR family transcriptional regulator
912	 67.43	0	1050893..1051546	-	217	115358882	-	Bamb_4133	-	TetR family transcriptional regulator
913	 67.90	0	1051694..1052995	+	433	115358883	-	Bamb_4134	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
914	 71.79	+1	1053027..1053416	+	129	115358884	-	Bamb_4135	-	hypothetical protein
915	 62.75	-1	1053413..1054741	-	442	115358885	-	Bamb_4136	-	sodium:dicarboxylate symporter
916	 66.72	0	1054917..1056668	-	583	115358886	-	Bamb_4137	-	gamma-glutamyltransferase
917	 64.73	0	1057004..1057882	+	292	115358887	-	Bamb_4138	-	RpiR family transcriptional regulator
918	 65.27	0	1057957..1059318	-	453	115358888	-	Bamb_4139	-	ABC transporter related
919	 64.33	0	1059315..1061069	-	584	115358889	-	Bamb_4140	-	binding-protein-dependent transport systems inner membrane component
920	 67.62	0	1061515..1062459	+	314	115358890	-	Bamb_4141	-	metallophosphoesterase
921	 62.57	-1	1062483..1062824	+	113	115358891	-	Bamb_4142	-	blue (type1) copper domain-containing protein
922	 69.30	0	1062930..1064069	+	379	115358892	-	Bamb_4143	-	patatin
923	 66.38	0	1064118..1064822	-	234	115358893	-	Bamb_4144	-	short-chain dehydrogenase/reductase SDR
924	 67.22	0	1064944..1065843	+	299	115358894	-	Bamb_4145	-	LysR family transcriptional regulator
925	 64.23	0	1065932..1066873	-	313	115358895	-	Bamb_4146	-	LysR family transcriptional regulator
926	 65.41	0	1066961..1068232	+	423	115358896	-	Bamb_4147	-	major facilitator transporter
927	 64.77	0	1068297..1069190	+	297	115358897	-	Bamb_4148	-	amidohydrolase 2
928	 67.31	0	1069378..1069686	+	102	115358898	-	Bamb_4149	-	ArsR family transcriptional regulator
929	 69.30	0	1069759..1070820	+	353	115358899	-	Bamb_4150	-	NADH:flavin oxidoreductase/NADH oxidase
930	 67.56	0	1070836..1071396	-	186	115358900	-	Bamb_4151	-	GCN5-related N-acetyltransferase
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.