IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
763	 66.59	0	891994..893241	-	415	115358733	-	Bamb_3983	-	major facilitator transporter
764	 70.00	0	893598..894137	+	179	115358734	-	Bamb_3984	-	hypothetical protein
765	 66.43	0	894431..895291	+	286	115358735	-	Bamb_3985	-	hypothetical protein
766	 64.89	0	895377..896051	+	224	115358736	-	Bamb_3986	-	GntR family transcriptional regulator
767	 62.16	-1	896116..896514	-	132	115358737	ectC	Bamb_3987	-	L-ectoine synthase
768	 72.26	+1	896581..897921	-	446	115358738	-	Bamb_3988	-	amidase
769	 65.00	0	897945..899447	-	500	115358739	-	Bamb_3989	-	polar amino acid ABC transporter, inner membrane subunit
770	 67.26	0	899532..900374	-	280	115358740	-	Bamb_3990	-	extracellular solute-binding protein
771	 63.66	0	900844..901740	-	298	115358741	-	Bamb_3991	-	extracellular solute-binding protein
772	 71.22	+1	902153..903820	+	555	115358742	-	Bamb_3992	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
773	 65.84	0	904548..907328	+	926	115358743	-	Bamb_3993	-	magnesium-translocating P-type ATPase
774	 66.67	0	907397..908140	+	247	115358744	-	Bamb_3994	-	hypothetical protein
775	 68.07	0	908213..908497	-	94	115358745	-	Bamb_3995	-	hypothetical protein
776	 69.18	0	908570..909445	-	291	115358746	-	Bamb_3996	-	LysR family transcriptional regulator
777	 68.93	0	909550..909858	-	102	115358747	-	Bamb_3997	-	hypothetical protein
778	 70.19	0	909981..911060	+	359	115358748	-	Bamb_3998	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
779	 65.02	0	911107..911349	+	80	115358749	-	Bamb_3999	-	hypothetical protein
780	 69.74	0	911499..911954	+	151	115358750	-	Bamb_4000	-	MarR family transcriptional regulator
781	 67.38	0	912025..912588	+	187	115358751	-	Bamb_4001	-	isochorismatase hydrolase
782	 69.89	0	912585..914042	+	485	115358752	-	Bamb_4002	-	EmrB/QacA family drug resistance transporter
783	 65.64	0	915182..916543	+	453	115358753	-	Bamb_4004	-	MscS mechanosensitive ion channel
784	 69.34	0	916611..918032	-	473	115358754	-	Bamb_4005	-	GntR family transcriptional regulator
785	 67.53	0	918186..920510	+	774	115358755	-	Bamb_4006	-	oxidoreductase alpha (molybdopterin) subunit
786	 68.73	0	920523..921443	+	306	115358756	-	Bamb_4007	-	hypothetical protein
787	 72.38	+1	921485..923515	-	676	115358757	-	Bamb_4008	-	fusaric acid resistance protein region
788	 68.16	0	923632..924567	+	311	115358758	-	Bamb_4009	-	LysR family transcriptional regulator
789	 66.60	0	924987..926546	+	519	115358759	-	Bamb_4010	-	EmrB/QacA family drug resistance transporter
790	 71.17	+1	927122..927454	+	110	115358760	-	Bamb_4011	-	hypothetical protein
791	 64.97	0	927591..929180	+	529	115358761	-	Bamb_4012	-	extracellular solute-binding protein
792	 69.16	0	929263..930588	-	441	115358762	-	Bamb_4013	-	Mn2+/Fe2+ transporter
793	 63.56	0	930670..931926	-	418	115358763	-	Bamb_4014	-	oxalate decarboxylase
794	 67.56	0	932553..933446	+	297	115358764	-	Bamb_4015	-	RpiR family transcriptional regulator
795	 68.79	0	933461..934024	+	187	115358765	-	Bamb_4016	-	D-alanyl-D-alanine dipeptidase
796	 64.86	0	934107..935708	+	533	115358766	-	Bamb_4017	-	extracellular solute-binding protein
797	 69.19	0	935719..936789	+	356	115358767	-	Bamb_4018	-	binding-protein-dependent transport systems inner membrane component
798	 70.27	0	936856..937770	+	304	115358768	-	Bamb_4019	-	binding-protein-dependent transport systems inner membrane component
799	 70.93	0	937772..938686	+	304	115358769	-	Bamb_4020	-	ABC transporter related
800	 70.01	0	938683..939459	+	258	115358770	-	Bamb_4021	-	ABC transporter related
801	 66.49	0	939898..940449	+	183	115358771	-	Bamb_4022	-	fimbrial protein
802	 66.53	0	940562..941302	+	246	115358772	-	Bamb_4023	-	pili assembly chaperone
803	 68.67	0	941499..944099	+	866	115358773	-	Bamb_4024	-	fimbrial biogenesis outer membrane usher protein
804	 65.77	0	944109..945113	+	334	115358774	-	Bamb_4025	-	fimbrial protein
805	 69.80	0	945266..945520	+	84	115358775	-	Bamb_4026	-	transglycosylase-associated protein
806	 65.18	0	945870..946205	+	111	115358776	-	Bamb_4027	-	hypothetical protein
807	 68.04	0	946228..947100	-	290	115358777	-	Bamb_4028	-	LysR family transcriptional regulator
808	 72.33	+1	947225..948124	-	299	115358778	-	Bamb_4029	-	Beta-lactamase
809	 70.83	0	948325..949164	-	279	115358779	-	Bamb_4030	-	peptidase M23B
810	 63.96	0	949432..949542	-	36	115358780	-	Bamb_4031	-	hypothetical protein
811	 67.89	0	949702..950598	+	298	115358781	-	Bamb_4032	-	LysR family transcriptional regulator
812	 65.12	0	950659..951045	+	128	115358782	-	Bamb_4033	-	hypothetical protein
813	 69.40	0	951110..951913	-	267	115358783	-	Bamb_4034	-	hypothetical protein
814	 70.21	0	951995..953011	-	338	115358784	-	Bamb_4035	-	aldo/keto reductase
815	 69.30	0	953148..954059	+	303	115358785	-	Bamb_4036	-	LysR family transcriptional regulator
816	 64.68	0	954107..955261	-	384	115358786	-	Bamb_4037	-	porin
817	 69.87	0	955591..956745	+	384	115358787	-	Bamb_4038	-	hypothetical protein
818	 69.42	0	956807..957751	+	314	115358788	-	Bamb_4039	-	putative esterase
819	 69.71	0	957991..959205	-	404	115358789	-	Bamb_4040	-	salicylate 1-monooxygenase
820	 68.15	0	959389..960333	+	314	115358790	-	Bamb_4041	-	LysR family transcriptional regulator
821	 65.35	0	960434..961192	+	252	115358791	-	Bamb_4042	-	short-chain dehydrogenase/reductase SDR
822	 61.77	-1	961337..962317	+	326	115358792	-	Bamb_4043	-	MarR family transcriptional regulator
823	 64.86	0	962355..962687	-	110	115358793	-	Bamb_4044	-	cupin 2 domain-containing protein
824	 65.79	0	962914..964392	-	492	115358794	-	Bamb_4045	-	diguanylate cyclase
825	 66.03	0	964552..965646	-	364	115358795	-	Bamb_4046	-	TrkA domain-containing protein
826	 70.69	0	965750..967117	-	455	115358796	-	Bamb_4047	-	FAD dependent oxidoreductase
827	 64.35	0	967334..967981	+	215	115358797	-	Bamb_4048	-	GP32
828	 61.23	-1	968336..968611	-	91	115358798	-	Bamb_4049	-	hypothetical protein
829	 59.18	-1	968895..969161	-	88	115358799	-	Bamb_4050	-	hypothetical protein
830	 67.25	0	969641..970495	+	284	115358800	-	Bamb_4051	-	response regulator receiver protein
831	 68.35	0	970616..972283	+	555	115358801	-	Bamb_4052	-	hypothetical protein
832	 48.69	-2	972473..973696	+	407	115358802	-	Bamb_4053	-	hypothetical protein
833	 49.04	-2	973786..974097	+	103	115358803	-	Bamb_4054	-	hypothetical protein
834	 69.49	0	974235..975794	-	519	115358804	-	Bamb_4055	-	methyl-accepting chemotaxis sensory transducer
835	 69.15	0	976008..977537	+	509	115358805	-	Bamb_4056	-	EmrB/QacA family drug resistance transporter
836	 74.27	+1	977631..978629	-	332	115358806	-	Bamb_4057	-	alcohol dehydrogenase
837	 74.48	+1	978755..979675	+	306	115358807	-	Bamb_4058	-	LysR family transcriptional regulator
838	 71.63	+1	979705..980328	+	207	115358808	-	Bamb_4059	-	GCN5-related N-acetyltransferase
839	 67.84	0	980338..981186	+	282	115358809	-	Bamb_4060	-	MerR family transcriptional regulator
840	 67.48	0	981311..982291	+	326	115358810	-	Bamb_4061	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
841	 65.78	0	982383..983288	-	301	115358811	-	Bamb_4062	-	LysR family transcriptional regulator
842	 64.97	0	983407..983997	+	196	115358812	-	Bamb_4063	-	hypothetical protein
843	 55.88	-2	984325..984528	+	67	115358813	-	Bamb_4064	-	cold-shock DNA-binding domain-containing protein
844	 55.71	-2	984812..985021	+	69	115358814	-	Bamb_4065	-	hypothetical protein
845	 66.25	0	985077..986045	-	322	115358815	-	Bamb_4066	-	agmatinase
846	 71.88	+1	986417..987088	+	223	115358816	-	Bamb_4067	-	YhhN family protein
847	 67.04	0	987335..988924	+	529	115358817	-	Bamb_4068	-	flavin-containing monooxygenase FMO
848	 66.56	0	988946..989884	+	312	115358818	-	Bamb_4069	-	short-chain dehydrogenase/reductase SDR
849	 64.35	0	989881..990786	+	301	115358819	-	Bamb_4070	-	metal-dependent hydrolase
850	 71.60	+1	990791..991723	+	310	115358820	-	Bamb_4071	-	alpha/beta hydrolase fold
851	 67.21	0	991684..992238	-	184	115358821	-	Bamb_4072	-	hypothetical protein
852	 71.60	+1	992421..993311	+	296	115358822	-	Bamb_4073	-	Urea transporter
853	 68.98	0	993286..994062	+	258	115358823	-	Bamb_4074	-	hypothetical protein
854	 62.43	-1	994123..994311	+	62	115358824	-	Bamb_4075	-	4-oxalocrotonate tautomerase
855	 58.56	-2	994417..994638	+	73	115358825	-	Bamb_4076	-	putative cytoplasmic protein
856	 68.50	0	994790..999631	+	1613	115358826	-	Bamb_4077	-	NAD-glutamate dehydrogenase
857	 71.43	+1	999647..1000528	-	293	115358827	-	Bamb_4078	-	putative methyltransferase
858	 65.24	0	1000539..1000889	-	116	115358828	-	Bamb_4079	-	hypothetical protein
859	 61.36	-1	1000891..1001154	-	87	115358829	-	Bamb_4080	-	hypothetical protein
860	 68.59	0	1001174..1002007	-	277	115358830	-	Bamb_4081	-	N-hydroxyarylamine O-acetyltransferase
861	 70.85	0	1002134..1002826	-	230	115358831	-	Bamb_4082	-	hypothetical protein
862	 70.51	0	1003073..1004557	-	494	115358832	-	Bamb_4083	-	amidase
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.