IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
31	 66.20	0	31232..33172	+	646	115358001	-	Bamb_3250	-	1-deoxy-D-xylulose-5-phosphate synthase
32	 64.69	0	33327..34136	+	269	115358002	-	Bamb_3251	-	putative GTP cyclohydrolase
33	 69.45	0	34237..35277	-	346	115358003	-	Bamb_3252	-	O-sialoglycoprotein endopeptidase
34	 69.62	0	35409..36626	+	405	115358004	-	Bamb_3253	-	hypothetical protein
35	 55.87	-2	36732..36944	+	70	115358005	rpsU	Bamb_3254	-	30S ribosomal protein S21
36	 65.32	0	37131..37577	+	148	115358006	-	Bamb_3255	-	GatB/Yqey domain-containing protein
37	 65.76	0	37642..39510	+	622	115358007	dnaG	Bamb_3256	-	DNA primase
38	 62.82	-1	39599..42016	+	805	115358008	-	Bamb_3257	-	RNA polymerase sigma factor RpoD
39	 60.73	-1	42358..43149	-	263	115358009	-	Bamb_3258	-	carboxymuconolactone decarboxylase
40	 62.70	-1	43127..43630	-	167	115358010	-	Bamb_3259	-	cupin 2 domain-containing protein
41	 62.50	-1	43648..44415	-	255	115358011	-	Bamb_3260	-	short-chain dehydrogenase/reductase SDR
42	 63.87	0	45193..45942	-	249	115358012	-	Bamb_3261	-	creatininase
43	 64.57	0	45955..47241	-	428	115358013	-	Bamb_3262	-	major facilitator transporter
44	 65.91	0	47412..48335	+	307	115358014	-	Bamb_3263	-	LysR family transcriptional regulator
45	 64.75	0	48569..49561	+	330	115358015	-	Bamb_3264	-	hypothetical protein
46	 57.17	-2	49604..50224	-	206	115358016	-	Bamb_3265	-	TetR family transcriptional regulator
47	 63.80	0	50440..52635	+	731	115358017	-	Bamb_3266	-	Beta-glucosidase
48	 62.58	-1	52783..54030	+	415	115358018	-	Bamb_3267	-	major facilitator transporter
49	 63.37	0	54062..55549	+	495	115358019	-	Bamb_3268	-	sulfatase
50	 61.58	-1	55728..56750	+	340	115358020	-	Bamb_3269	-	porin
51	 65.48	0	56763..57182	+	139	115358021	-	Bamb_3270	-	transport-associated
52	 61.18	-1	57216..58838	+	540	115358022	-	Bamb_3271	-	sulfatase
53	 65.79	0	59028..60632	-	534	115358023	-	Bamb_3272	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
54	 63.14	0	60697..61320	-	207	115358024	-	Bamb_3273	-	hypothetical protein
55	 70.56	0	61569..63056	-	495	115358025	-	Bamb_3274	-	RND efflux system outer membrane lipoprotein
56	 67.55	0	63070..64656	-	528	115358026	-	Bamb_3275	-	EmrB/QacA family drug resistance transporter
57	 71.22	+1	64649..65767	-	372	115358027	-	Bamb_3276	-	secretion protein HlyD family protein
58	 69.08	0	65860..66687	+	275	115358028	-	Bamb_3277	-	TetR family transcriptional regulator
59	 70.02	0	66701..69295	-	864	115358029	-	Bamb_3278	-	MscS mechanosensitive ion channel
60	 70.39	0	69333..70298	-	321	115358030	-	Bamb_3279	-	luciferase family protein
61	 67.65	0	70347..70652	-	101	115358031	-	Bamb_3280	-	hypothetical protein
62	 62.80	-1	70649..71062	-	137	115358032	-	Bamb_3281	-	hypothetical protein
63	 65.22	0	71189..71395	+	68	115358033	-	Bamb_3282	-	hypothetical protein
64	 70.90	0	71392..72288	+	298	115358034	-	Bamb_3283	-	NAD-dependent deacetylase
65	 72.74	+1	72285..72926	+	213	115358035	-	Bamb_3284	-	hypothetical protein
66	 66.17	0	73024..74436	+	470	115358036	-	Bamb_3285	-	6-phosphogluconate dehydrogenase
67	 66.38	0	74635..74979	+	114	115358037	-	Bamb_3286	-	hypothetical protein
68	 70.09	0	75091..75411	-	106	115358038	-	Bamb_3287	-	hypothetical protein
69	 72.27	+1	75826..76557	+	243	115358039	-	Bamb_3288	-	peptidase M23B
70	 65.26	0	76606..77316	-	236	115358040	-	Bamb_3289	-	hypothetical protein
71	 62.94	0	77476..78012	+	178	115358041	-	Bamb_3290	-	cytochrome B561
72	 71.00	0	78169..78537	+	122	115358042	-	Bamb_3291	-	hypothetical protein
73	 68.83	0	78621..80750	+	709	115358043	-	Bamb_3292	-	TonB-dependent copper receptor
74	 66.85	0	80980..82074	+	364	115358044	-	Bamb_3293	-	triacylglycerol lipase
75	 74.30	+1	82078..83112	+	344	115358045	-	Bamb_3294	-	lipase chaperone
76	 69.55	0	83152..84675	-	507	115358046	-	Bamb_3295	-	GntR family transcriptional regulator
77	 66.39	0	84784..85878	+	364	115358047	-	Bamb_3296	-	spermidine/putrescine ABC transporter ATPase subunit
78	 64.47	0	85956..87002	+	348	115358048	-	Bamb_3297	-	extracellular solute-binding protein
79	 68.17	0	87105..88367	+	420	115358049	-	Bamb_3298	-	binding-protein-dependent transport systems inner membrane component
80	 67.50	0	88405..89241	+	278	115358050	-	Bamb_3299	-	binding-protein-dependent transport systems inner membrane component
81	 71.95	+1	89371..90864	+	497	115358051	-	Bamb_3300	-	major facilitator transporter
82	 67.59	0	90937..92676	-	579	115358052	-	Bamb_3301	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
83	 65.12	0	93377..93700	+	107	115358053	-	Bamb_3302	-	ArsR family transcriptional regulator
84	 65.05	0	93697..94128	+	143	115358054	-	Bamb_3303	-	activator of Hsp90 ATPase 1 family protein
85	 68.71	0	94125..94565	+	146	115358055	-	Bamb_3304	-	hypothetical protein
86	 64.42	0	94709..97426	-	905	115358056	acnA	Bamb_3305	-	aconitate hydratase
87	 67.01	0	97479..98930	-	483	115358057	prpD	Bamb_3306	-	2-methylcitrate dehydratase
88	 65.88	0	98962..99471	-	169	115358058	-	Bamb_3307	-	hypothetical protein
89	 72.14	+1	99695..100699	-	334	115358059	-	Bamb_3308	-	HpcH/HpaI aldolase
90	 65.65	0	100886..101872	-	328	115358060	-	Bamb_3309	-	malate dehydrogenase
91	 66.79	0	102161..102985	+	274	115358061	-	Bamb_3310	-	GntR family transcriptional regulator
92	 58.27	-2	103155..103571	+	138	115358062	-	Bamb_3311	-	succinate dehydrogenase, cytochrome b subunit
93	 62.33	-1	103576..103944	+	122	115358063	-	Bamb_3312	-	succinate dehydrogenase, cytochrome b subunit
94	 65.32	0	103948..105723	+	591	115358064	sdhA	Bamb_3313	-	succinate dehydrogenase flavoprotein subunit
95	 62.54	-1	105745..106446	+	233	115358065	sdhB	Bamb_3314	-	succinate dehydrogenase iron-sulfur subunit
96	 60.81	-1	106453..106725	+	90	115358066	-	Bamb_3315	-	hypothetical protein
97	 60.75	-1	106792..108093	+	433	115358067	gltA	Bamb_3316	-	type II citrate synthase
98	 72.76	+1	108183..109166	-	327	115358068	-	Bamb_3317	-	AraC family transcriptional regulator
99	 68.21	0	109238..109627	+	129	115358069	-	Bamb_3318	-	glyoxalase/bleomycin resistance protein/dioxygenase
100	 70.10	0	109739..110992	+	417	115358070	-	Bamb_3319	-	hypothetical protein
101	 69.13	0	111217..111987	+	256	115358071	-	Bamb_3320	-	dimethylargininase
102	 64.09	0	112089..112553	+	154	115358072	-	Bamb_3321	-	AsnC family transcriptional regulator
103	 66.54	0	112694..114229	+	511	115358073	-	Bamb_3322	-	amino acid permease-associated region
104	 65.43	0	114431..115156	-	241	115358074	-	Bamb_3323	-	glutathione S-transferase domain-containing protein
105	 67.57	0	115284..115616	-	110	115358075	-	Bamb_3324	-	cupin 2 domain-containing protein
106	 58.83	-1	115836..116882	-	348	115358076	-	Bamb_3325	-	hypothetical protein
107	 57.66	-2	117318..118172	-	284	115358077	-	Bamb_3326	-	xylose isomerase domain-containing protein
108	 59.01	-1	118514..119479	+	321	115358078	-	Bamb_3327	-	periplasmic binding protein/LacI transcriptional regulator
109	 61.02	-1	119611..120690	+	359	115358079	-	Bamb_3328	-	oxidoreductase domain-containing protein
110	 59.60	-1	121149..122732	+	527	115358080	-	Bamb_3329	-	ABC transporter related
111	 61.33	-1	122725..123735	+	336	115358081	-	Bamb_3330	-	inner-membrane translocator
112	 59.08	-1	123750..124724	+	324	115358082	-	Bamb_3331	-	inner-membrane translocator
113	 58.01	-2	124976..125899	-	307	115358083	-	Bamb_3332	-	LysR family transcriptional regulator
114	 58.73	-2	126199..127080	+	293	115358084	-	Bamb_3333	-	catechol 1,2-dioxygenase
115	 55.56	-2	127077..127427	+	116	115358085	-	Bamb_3334	-	stress responsive alpha-beta barrel domain-containing protein
116	 62.67	-1	127414..128490	+	358	115358086	-	Bamb_3335	-	iron-containing alcohol dehydrogenase
117	 53.68	-2	128535..128819	+	94	115358087	-	Bamb_3336	-	YciI-like protein
118	 60.57	-1	128973..129776	+	267	115358088	-	Bamb_3337	-	short-chain dehydrogenase/reductase SDR
119	 60.22	-1	130208..131200	+	330	115358089	-	Bamb_3338	-	inositol 2-dehydrogenase
120	 59.74	-1	131309..132217	+	302	115358090	-	Bamb_3339	-	LysR family transcriptional regulator
121	 66.45	0	132441..133850	+	469	115358091	-	Bamb_3340	-	isopropylmalate isomerase large subunit
122	 72.11	+1	133854..134000	+	48	115358092	-	Bamb_3341	-	entericidin EcnAB
123	 63.44	0	134066..134716	+	216	115358093	leuD	Bamb_3342	-	isopropylmalate isomerase small subunit
124	 66.39	0	134792..135859	+	355	115358094	-	Bamb_3343	-	3-isopropylmalate dehydrogenase
125	 64.35	0	136181..137302	+	373	115358095	-	Bamb_3344	-	aspartate-semialdehyde dehydrogenase
126	 73.53	+1	137569..139653	+	694	115358096	-	Bamb_3345	-	hypothetical protein
127	 68.51	0	139653..140465	+	270	115358097	truA	Bamb_3346	-	tRNA pseudouridine synthase A
128	 69.09	0	140462..141163	+	233	115358098	-	Bamb_3347	-	N-(5'-phosphoribosyl)anthranilate isomerase
129	 66.42	0	141220..142413	+	397	115358099	-	Bamb_3348	-	tryptophan synthase subunit beta
130	 65.61	0	142421..143272	+	283	115358100	-	Bamb_3349	-	DNA methylase N-4/N-6 domain-containing protein
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.