IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 69.82	0	837766..838557	+	263	115358693	-	Bamb_3943	-	hypothetical protein
724	 71.44	+1	838684..839625	+	313	115358694	-	Bamb_3944	-	AraC family transcriptional regulator
725	 69.81	0	839755..840453	+	232	115358695	-	Bamb_3945	-	fumarylacetoacetate (FAA) hydrolase
726	 69.62	0	840572..841858	-	428	115358696	-	Bamb_3946	-	major facilitator transporter
727	 72.39	+1	842010..843635	-	541	115358697	-	Bamb_3947	-	peptidase S1 and S6, chymotrypsin/Hap
728	 69.52	0	843896..844771	-	291	115358698	-	Bamb_3948	-	LysR family transcriptional regulator
729	 68.58	0	844921..846174	+	417	115358699	-	Bamb_3949	-	major facilitator transporter
730	 72.87	+1	846367..847914	-	515	115358700	-	Bamb_3950	-	GntR family transcriptional regulator
731	 70.13	0	848204..849445	+	413	115358701	-	Bamb_3951	-	GCN5-related N-acetyltransferase
732	 71.30	+1	849468..849920	-	150	115358702	-	Bamb_3952	-	hypothetical protein
733	 67.51	0	850415..851479	+	354	115358703	-	Bamb_3953	-	alcohol dehydrogenase
734	 68.95	0	851745..852401	+	218	115358704	-	Bamb_3954	-	hypothetical protein
735	 71.22	+1	852467..853345	+	292	115358705	-	Bamb_3955	-	abortive infection protein
736	 67.07	0	853388..854368	-	326	115358706	-	Bamb_3956	-	aldo/keto reductase
737	 65.29	0	854623..855348	-	241	115358707	-	Bamb_3957	-	multiple antibiotic resistance (MarC)-related proteins
738	 71.79	+1	855425..856225	-	266	115358708	-	Bamb_3958	-	enoyl-CoA hydratase/isomerase
739	 69.09	0	856266..857588	-	440	115358709	-	Bamb_3959	-	phenylacetate-CoA ligase
740	 72.27	+1	857648..859201	-	517	115358710	-	Bamb_3960	-	3-hydroxybutyryl-CoA dehydrogenase
741	 68.69	0	859738..860826	+	362	115358711	-	Bamb_3961	-	sodium/calcium exchanger membrane region
742	 69.64	0	860937..861845	-	302	115358712	-	Bamb_3962	-	LysR family transcriptional regulator
743	 72.95	+1	861946..862311	+	121	115358713	-	Bamb_3963	-	hypothetical protein
744	 67.18	0	862271..863239	-	322	115358714	-	Bamb_3964	-	LysR family transcriptional regulator
745	 72.19	+1	863604..864779	+	391	115358715	-	Bamb_3965	-	CBS domain-containing protein
746	 62.96	0	864851..865309	+	152	115358716	-	Bamb_3966	-	MarR family transcriptional regulator
747	 68.96	0	865340..867127	+	595	115358717	-	Bamb_3967	-	Cl- channel, voltage-gated family protein
748	 63.61	0	867615..867941	+	108	115358718	-	Bamb_3968	-	hypothetical protein
749	 61.99	-1	868053..868373	-	106	115358719	-	Bamb_3969	-	hypothetical protein
750	 69.32	0	868551..869453	-	300	115358720	-	Bamb_3970	-	LysR family transcriptional regulator
751	 68.78	0	869636..870820	+	394	115358721	-	Bamb_3971	-	amidohydrolase
752	 68.70	0	870864..872189	+	441	115358722	-	Bamb_3972	-	major facilitator transporter
753	 57.76	-2	872368..873063	-	231	115358723	-	Bamb_3973	-	hypothetical protein
754	 53.05	-2	873476..876757	-	1093	115358724	-	Bamb_3974	-	type III restriction enzyme, res subunit
755	 63.60	0	877310..878419	-	369	115358725	-	Bamb_3975	-	porin
756	 62.86	-1	878477..879001	-	174	115358726	-	Bamb_3976	-	DoxX family protein
757	 67.84	0	879084..880361	-	425	115358727	-	Bamb_3977	-	cytochrome c, class I
758	 65.19	0	880364..881983	-	539	115358728	-	Bamb_3978	-	glucose-methanol-choline oxidoreductase
759	 62.72	-1	881983..882489	-	168	115358729	-	Bamb_3979	-	hypothetical protein
760	 69.98	0	882798..888839	+	2013	115358730	-	Bamb_3980	-	alpha-2-macroglobulin domain-containing protein
761	 72.16	+1	888847..891084	+	745	115358731	-	Bamb_3981	-	penicillin-binding protein 1C
762	 68.98	0	891266..891958	+	230	115358732	-	Bamb_3982	-	hypothetical protein
763	 66.59	0	891994..893241	-	415	115358733	-	Bamb_3983	-	major facilitator transporter
764	 70.00	0	893598..894137	+	179	115358734	-	Bamb_3984	-	hypothetical protein
765	 66.43	0	894431..895291	+	286	115358735	-	Bamb_3985	-	hypothetical protein
766	 64.89	0	895377..896051	+	224	115358736	-	Bamb_3986	-	GntR family transcriptional regulator
767	 62.16	-1	896116..896514	-	132	115358737	ectC	Bamb_3987	-	L-ectoine synthase
768	 72.26	+1	896581..897921	-	446	115358738	-	Bamb_3988	-	amidase
769	 65.00	0	897945..899447	-	500	115358739	-	Bamb_3989	-	polar amino acid ABC transporter, inner membrane subunit
770	 67.26	0	899532..900374	-	280	115358740	-	Bamb_3990	-	extracellular solute-binding protein
771	 63.66	0	900844..901740	-	298	115358741	-	Bamb_3991	-	extracellular solute-binding protein
772	 71.22	+1	902153..903820	+	555	115358742	-	Bamb_3992	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
773	 65.84	0	904548..907328	+	926	115358743	-	Bamb_3993	-	magnesium-translocating P-type ATPase
774	 66.67	0	907397..908140	+	247	115358744	-	Bamb_3994	-	hypothetical protein
775	 68.07	0	908213..908497	-	94	115358745	-	Bamb_3995	-	hypothetical protein
776	 69.18	0	908570..909445	-	291	115358746	-	Bamb_3996	-	LysR family transcriptional regulator
777	 68.93	0	909550..909858	-	102	115358747	-	Bamb_3997	-	hypothetical protein
778	 70.19	0	909981..911060	+	359	115358748	-	Bamb_3998	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
779	 65.02	0	911107..911349	+	80	115358749	-	Bamb_3999	-	hypothetical protein
780	 69.74	0	911499..911954	+	151	115358750	-	Bamb_4000	-	MarR family transcriptional regulator
781	 67.38	0	912025..912588	+	187	115358751	-	Bamb_4001	-	isochorismatase hydrolase
782	 69.89	0	912585..914042	+	485	115358752	-	Bamb_4002	-	EmrB/QacA family drug resistance transporter
783	 65.64	0	915182..916543	+	453	115358753	-	Bamb_4004	-	MscS mechanosensitive ion channel
784	 69.34	0	916611..918032	-	473	115358754	-	Bamb_4005	-	GntR family transcriptional regulator
785	 67.53	0	918186..920510	+	774	115358755	-	Bamb_4006	-	oxidoreductase alpha (molybdopterin) subunit
786	 68.73	0	920523..921443	+	306	115358756	-	Bamb_4007	-	hypothetical protein
787	 72.38	+1	921485..923515	-	676	115358757	-	Bamb_4008	-	fusaric acid resistance protein region
788	 68.16	0	923632..924567	+	311	115358758	-	Bamb_4009	-	LysR family transcriptional regulator
789	 66.60	0	924987..926546	+	519	115358759	-	Bamb_4010	-	EmrB/QacA family drug resistance transporter
790	 71.17	+1	927122..927454	+	110	115358760	-	Bamb_4011	-	hypothetical protein
791	 64.97	0	927591..929180	+	529	115358761	-	Bamb_4012	-	extracellular solute-binding protein
792	 69.16	0	929263..930588	-	441	115358762	-	Bamb_4013	-	Mn2+/Fe2+ transporter
793	 63.56	0	930670..931926	-	418	115358763	-	Bamb_4014	-	oxalate decarboxylase
794	 67.56	0	932553..933446	+	297	115358764	-	Bamb_4015	-	RpiR family transcriptional regulator
795	 68.79	0	933461..934024	+	187	115358765	-	Bamb_4016	-	D-alanyl-D-alanine dipeptidase
796	 64.86	0	934107..935708	+	533	115358766	-	Bamb_4017	-	extracellular solute-binding protein
797	 69.19	0	935719..936789	+	356	115358767	-	Bamb_4018	-	binding-protein-dependent transport systems inner membrane component
798	 70.27	0	936856..937770	+	304	115358768	-	Bamb_4019	-	binding-protein-dependent transport systems inner membrane component
799	 70.93	0	937772..938686	+	304	115358769	-	Bamb_4020	-	ABC transporter related
800	 70.01	0	938683..939459	+	258	115358770	-	Bamb_4021	-	ABC transporter related
801	 66.49	0	939898..940449	+	183	115358771	-	Bamb_4022	-	fimbrial protein
802	 66.53	0	940562..941302	+	246	115358772	-	Bamb_4023	-	pili assembly chaperone
803	 68.67	0	941499..944099	+	866	115358773	-	Bamb_4024	-	fimbrial biogenesis outer membrane usher protein
804	 65.77	0	944109..945113	+	334	115358774	-	Bamb_4025	-	fimbrial protein
805	 69.80	0	945266..945520	+	84	115358775	-	Bamb_4026	-	transglycosylase-associated protein
806	 65.18	0	945870..946205	+	111	115358776	-	Bamb_4027	-	hypothetical protein
807	 68.04	0	946228..947100	-	290	115358777	-	Bamb_4028	-	LysR family transcriptional regulator
808	 72.33	+1	947225..948124	-	299	115358778	-	Bamb_4029	-	Beta-lactamase
809	 70.83	0	948325..949164	-	279	115358779	-	Bamb_4030	-	peptidase M23B
810	 63.96	0	949432..949542	-	36	115358780	-	Bamb_4031	-	hypothetical protein
811	 67.89	0	949702..950598	+	298	115358781	-	Bamb_4032	-	LysR family transcriptional regulator
812	 65.12	0	950659..951045	+	128	115358782	-	Bamb_4033	-	hypothetical protein
813	 69.40	0	951110..951913	-	267	115358783	-	Bamb_4034	-	hypothetical protein
814	 70.21	0	951995..953011	-	338	115358784	-	Bamb_4035	-	aldo/keto reductase
815	 69.30	0	953148..954059	+	303	115358785	-	Bamb_4036	-	LysR family transcriptional regulator
816	 64.68	0	954107..955261	-	384	115358786	-	Bamb_4037	-	porin
817	 69.87	0	955591..956745	+	384	115358787	-	Bamb_4038	-	hypothetical protein
818	 69.42	0	956807..957751	+	314	115358788	-	Bamb_4039	-	putative esterase
819	 69.71	0	957991..959205	-	404	115358789	-	Bamb_4040	-	salicylate 1-monooxygenase
820	 68.15	0	959389..960333	+	314	115358790	-	Bamb_4041	-	LysR family transcriptional regulator
821	 65.35	0	960434..961192	+	252	115358791	-	Bamb_4042	-	short-chain dehydrogenase/reductase SDR
822	 61.77	-1	961337..962317	+	326	115358792	-	Bamb_4043	-	MarR family transcriptional regulator
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.