IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 64.14	0	796423..796659	-	78	115358656	-	Bamb_3906	-	hypothetical protein
687	 71.26	+1	797135..798004	-	289	115358657	-	Bamb_3907	-	LysR family transcriptional regulator
688	 69.55	0	798145..799533	+	462	115358658	-	Bamb_3908	-	major facilitator transporter
689	 69.57	0	799559..799903	-	114	115358659	-	Bamb_3909	-	hypothetical protein
690	 72.15	+1	800044..800262	-	72	115358660	-	Bamb_3910	-	hypothetical protein
691	 61.06	-1	800382..801434	+	350	115358661	-	Bamb_3911	-	IS605 family transposase OrfB
692	 71.48	+1	801491..802654	-	387	115358662	-	Bamb_3912	-	hypothetical protein
693	 71.25	+1	802657..804051	-	464	115358663	-	Bamb_3913	-	hypothetical protein
694	 64.30	0	804256..805101	-	281	115358664	-	Bamb_3914	-	GCN5-related N-acetyltransferase
695	 66.07	0	805329..805832	-	167	115358665	-	Bamb_3915	-	integral membrane protein
696	 71.67	+1	805829..806248	-	139	115358666	-	Bamb_3916	-	hypothetical protein
697	 69.99	0	806245..806997	-	250	115358667	-	Bamb_3917	-	RNA polymerase sigma factor
698	 64.91	0	807032..807145	-	37	115358668	-	Bamb_3918	-	hypothetical protein
699	 69.33	0	807215..807514	-	99	115358669	-	Bamb_3919	-	hypothetical protein
700	 68.39	0	807727..809526	+	599	115358670	-	Bamb_3920	-	metallophosphoesterase
701	 67.46	0	809639..810271	-	210	115358671	-	Bamb_3921	-	lysine exporter protein LysE/YggA
702	 67.89	0	810401..811297	-	298	115358672	-	Bamb_3922	-	LysR family transcriptional regulator
703	 68.60	0	811603..811860	+	85	115358673	-	Bamb_3923	-	hypothetical protein
704	 66.00	0	812138..812437	+	99	115358674	-	Bamb_3924	-	hypothetical protein
705	 67.45	0	812539..814323	-	594	115358675	-	Bamb_3925	-	diguanylate cyclase
706	 65.78	0	814320..815444	-	374	115358676	-	Bamb_3926	-	extracellular solute-binding protein
707	 69.04	0	815948..817381	+	477	115358677	-	Bamb_3927	-	GntR family transcriptional regulator
708	 70.40	0	817478..817879	+	133	115358678	-	Bamb_3928	-	hypothetical protein
709	 69.02	0	818074..819858	+	594	115358679	-	Bamb_3929	-	nitrite/sulfite reductase hemoprotein beta subunit
710	 67.75	0	819855..820316	+	153	115358680	-	Bamb_3930	-	hypothetical protein
711	 70.10	0	820390..821670	-	426	115358681	-	Bamb_3931	-	virulence factor family protein
712	 70.33	0	821667..824261	-	864	115358682	-	Bamb_3932	-	hypothetical protein
713	 67.82	0	824621..825055	-	144	115358683	-	Bamb_3933	-	hypothetical protein
714	 70.60	0	825164..829357	-	1397	115358684	-	Bamb_3934	-	molybdopterin oxidoreductase
715	 66.67	0	829374..829721	-	115	115358685	-	Bamb_3935	-	nitrite reductase (NAD(P)H), small subunit
716	 67.97	0	829760..832363	-	867	115358686	-	Bamb_3936	-	nitrite reductase (NAD(P)H), large subunit
717	 68.70	0	832384..833709	-	441	115358687	-	Bamb_3937	-	major facilitator transporter
718	 68.23	0	833861..834052	-	63	115358688	-	Bamb_3938	-	hypothetical protein
719	 73.36	+1	834304..835155	+	283	115358689	-	Bamb_3939	-	uroporphyrin-III C-methyltransferase
720	 68.51	0	835321..835917	+	198	115358690	-	Bamb_3940	-	response regulator receiver/ANTAR domain-containing protein
721	 73.18	+1	835923..836966	+	347	115358691	-	Bamb_3941	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
722	 72.67	+1	837134..837733	+	199	115358692	-	Bamb_3942	-	uracil-DNA glycosylase superfamily protein
723	 69.82	0	837766..838557	+	263	115358693	-	Bamb_3943	-	hypothetical protein
724	 71.44	+1	838684..839625	+	313	115358694	-	Bamb_3944	-	AraC family transcriptional regulator
725	 69.81	0	839755..840453	+	232	115358695	-	Bamb_3945	-	fumarylacetoacetate (FAA) hydrolase
726	 69.62	0	840572..841858	-	428	115358696	-	Bamb_3946	-	major facilitator transporter
727	 72.39	+1	842010..843635	-	541	115358697	-	Bamb_3947	-	peptidase S1 and S6, chymotrypsin/Hap
728	 69.52	0	843896..844771	-	291	115358698	-	Bamb_3948	-	LysR family transcriptional regulator
729	 68.58	0	844921..846174	+	417	115358699	-	Bamb_3949	-	major facilitator transporter
730	 72.87	+1	846367..847914	-	515	115358700	-	Bamb_3950	-	GntR family transcriptional regulator
731	 70.13	0	848204..849445	+	413	115358701	-	Bamb_3951	-	GCN5-related N-acetyltransferase
732	 71.30	+1	849468..849920	-	150	115358702	-	Bamb_3952	-	hypothetical protein
733	 67.51	0	850415..851479	+	354	115358703	-	Bamb_3953	-	alcohol dehydrogenase
734	 68.95	0	851745..852401	+	218	115358704	-	Bamb_3954	-	hypothetical protein
735	 71.22	+1	852467..853345	+	292	115358705	-	Bamb_3955	-	abortive infection protein
736	 67.07	0	853388..854368	-	326	115358706	-	Bamb_3956	-	aldo/keto reductase
737	 65.29	0	854623..855348	-	241	115358707	-	Bamb_3957	-	multiple antibiotic resistance (MarC)-related proteins
738	 71.79	+1	855425..856225	-	266	115358708	-	Bamb_3958	-	enoyl-CoA hydratase/isomerase
739	 69.09	0	856266..857588	-	440	115358709	-	Bamb_3959	-	phenylacetate-CoA ligase
740	 72.27	+1	857648..859201	-	517	115358710	-	Bamb_3960	-	3-hydroxybutyryl-CoA dehydrogenase
741	 68.69	0	859738..860826	+	362	115358711	-	Bamb_3961	-	sodium/calcium exchanger membrane region
742	 69.64	0	860937..861845	-	302	115358712	-	Bamb_3962	-	LysR family transcriptional regulator
743	 72.95	+1	861946..862311	+	121	115358713	-	Bamb_3963	-	hypothetical protein
744	 67.18	0	862271..863239	-	322	115358714	-	Bamb_3964	-	LysR family transcriptional regulator
745	 72.19	+1	863604..864779	+	391	115358715	-	Bamb_3965	-	CBS domain-containing protein
746	 62.96	0	864851..865309	+	152	115358716	-	Bamb_3966	-	MarR family transcriptional regulator
747	 68.96	0	865340..867127	+	595	115358717	-	Bamb_3967	-	Cl- channel, voltage-gated family protein
748	 63.61	0	867615..867941	+	108	115358718	-	Bamb_3968	-	hypothetical protein
749	 61.99	-1	868053..868373	-	106	115358719	-	Bamb_3969	-	hypothetical protein
750	 69.32	0	868551..869453	-	300	115358720	-	Bamb_3970	-	LysR family transcriptional regulator
751	 68.78	0	869636..870820	+	394	115358721	-	Bamb_3971	-	amidohydrolase
752	 68.70	0	870864..872189	+	441	115358722	-	Bamb_3972	-	major facilitator transporter
753	 57.76	-2	872368..873063	-	231	115358723	-	Bamb_3973	-	hypothetical protein
754	 53.05	-2	873476..876757	-	1093	115358724	-	Bamb_3974	-	type III restriction enzyme, res subunit
755	 63.60	0	877310..878419	-	369	115358725	-	Bamb_3975	-	porin
756	 62.86	-1	878477..879001	-	174	115358726	-	Bamb_3976	-	DoxX family protein
757	 67.84	0	879084..880361	-	425	115358727	-	Bamb_3977	-	cytochrome c, class I
758	 65.19	0	880364..881983	-	539	115358728	-	Bamb_3978	-	glucose-methanol-choline oxidoreductase
759	 62.72	-1	881983..882489	-	168	115358729	-	Bamb_3979	-	hypothetical protein
760	 69.98	0	882798..888839	+	2013	115358730	-	Bamb_3980	-	alpha-2-macroglobulin domain-containing protein
761	 72.16	+1	888847..891084	+	745	115358731	-	Bamb_3981	-	penicillin-binding protein 1C
762	 68.98	0	891266..891958	+	230	115358732	-	Bamb_3982	-	hypothetical protein
763	 66.59	0	891994..893241	-	415	115358733	-	Bamb_3983	-	major facilitator transporter
764	 70.00	0	893598..894137	+	179	115358734	-	Bamb_3984	-	hypothetical protein
765	 66.43	0	894431..895291	+	286	115358735	-	Bamb_3985	-	hypothetical protein
766	 64.89	0	895377..896051	+	224	115358736	-	Bamb_3986	-	GntR family transcriptional regulator
767	 62.16	-1	896116..896514	-	132	115358737	ectC	Bamb_3987	-	L-ectoine synthase
768	 72.26	+1	896581..897921	-	446	115358738	-	Bamb_3988	-	amidase
769	 65.00	0	897945..899447	-	500	115358739	-	Bamb_3989	-	polar amino acid ABC transporter, inner membrane subunit
770	 67.26	0	899532..900374	-	280	115358740	-	Bamb_3990	-	extracellular solute-binding protein
771	 63.66	0	900844..901740	-	298	115358741	-	Bamb_3991	-	extracellular solute-binding protein
772	 71.22	+1	902153..903820	+	555	115358742	-	Bamb_3992	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
773	 65.84	0	904548..907328	+	926	115358743	-	Bamb_3993	-	magnesium-translocating P-type ATPase
774	 66.67	0	907397..908140	+	247	115358744	-	Bamb_3994	-	hypothetical protein
775	 68.07	0	908213..908497	-	94	115358745	-	Bamb_3995	-	hypothetical protein
776	 69.18	0	908570..909445	-	291	115358746	-	Bamb_3996	-	LysR family transcriptional regulator
777	 68.93	0	909550..909858	-	102	115358747	-	Bamb_3997	-	hypothetical protein
778	 70.19	0	909981..911060	+	359	115358748	-	Bamb_3998	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
779	 65.02	0	911107..911349	+	80	115358749	-	Bamb_3999	-	hypothetical protein
780	 69.74	0	911499..911954	+	151	115358750	-	Bamb_4000	-	MarR family transcriptional regulator
781	 67.38	0	912025..912588	+	187	115358751	-	Bamb_4001	-	isochorismatase hydrolase
782	 69.89	0	912585..914042	+	485	115358752	-	Bamb_4002	-	EmrB/QacA family drug resistance transporter
783	 65.64	0	915182..916543	+	453	115358753	-	Bamb_4004	-	MscS mechanosensitive ion channel
784	 69.34	0	916611..918032	-	473	115358754	-	Bamb_4005	-	GntR family transcriptional regulator
785	 67.53	0	918186..920510	+	774	115358755	-	Bamb_4006	-	oxidoreductase alpha (molybdopterin) subunit
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.