IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
626	 69.87	0	719301..731777	-	4158	115358596	-	Bamb_3846	-	peptidoglycan-binding LysM
627	 70.22	0	731936..732526	+	196	115358597	-	Bamb_3847	-	hypothetical protein
628	 68.42	0	732740..733996	+	418	115358598	-	Bamb_3848	-	porin
629	 63.82	0	734334..734825	+	163	115358599	-	Bamb_3849	-	OmpA/MotB domain-containing protein
630	 64.17	0	735011..735490	-	159	115358600	-	Bamb_3850	-	hypothetical protein
631	 70.70	0	735971..737233	-	420	115358601	-	Bamb_3851	-	cytochrome c, class I
632	 68.68	0	737230..737925	-	231	115358602	-	Bamb_3852	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
633	 68.06	0	737922..740798	-	958	115358603	-	Bamb_3853	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
634	 70.73	0	741191..742741	+	516	115358604	-	Bamb_3854	-	diguanylate cyclase with PAS/PAC sensor
635	 66.67	0	743005..743280	+	91	115358605	-	Bamb_3855	-	hypothetical protein
636	 67.69	0	743495..744568	+	357	115358606	-	Bamb_3856	-	succinylglutamate desuccinylase/aspartoacylase
637	 60.41	-1	744655..745725	-	356	115358607	-	Bamb_3857	-	hypothetical protein
638	 62.54	-1	745964..746884	+	306	162389969	rdgC	Bamb_3858	-	recombination associated protein
639	 69.66	0	747187..747753	+	188	115358609	-	Bamb_3859	-	GCN5-related N-acetyltransferase
640	 68.66	0	747817..748770	+	317	115358610	-	Bamb_3860	-	extracellular solute-binding protein
641	 71.81	+1	748810..749859	+	349	115358611	-	Bamb_3861	-	luciferase family protein
642	 68.87	0	749867..751225	+	452	115358612	-	Bamb_3862	-	flavin-dependent oxidoreductase
643	 69.13	0	751285..753069	+	594	115358613	-	Bamb_3863	-	polar amino acid ABC transporter, inner membrane subunit
644	 71.02	0	753104..754045	+	313	115358614	-	Bamb_3864	-	extracellular solute-binding protein
645	 71.15	+1	754140..754919	-	259	115358615	-	Bamb_3865	-	alkanesulfonate monooxygenase
646	 54.30	-2	755258..756397	+	379	115358616	-	Bamb_3866	-	acyltransferase 3
647	 72.77	+1	756822..757739	+	305	115358617	-	Bamb_3867	-	alpha/beta hydrolase-like protein
648	 68.52	0	757736..758167	+	143	115358618	-	Bamb_3868	-	MarR family transcriptional regulator
649	 67.08	0	758667..760109	+	480	115358619	-	Bamb_3869	-	BNR/Asp-box repeat-containing protein
650	 67.94	0	760172..761188	-	338	115358620	-	Bamb_3870	-	alcohol dehydrogenase
651	 69.12	0	761646..763727	+	693	115358621	-	Bamb_3871	-	TonB-dependent receptor
652	 60.81	-1	763759..764151	+	130	115358622	-	Bamb_3872	-	hypothetical protein
653	 67.35	0	764426..765895	+	489	115358623	-	Bamb_3873	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
654	 68.85	0	766000..767967	-	655	115358624	-	Bamb_3874	-	ATP-dependent metalloprotease FtsH
655	 70.15	0	768399..770063	+	554	115358625	-	Bamb_3875	-	phosphoesterase
656	 70.61	0	770099..770428	+	109	115358626	-	Bamb_3876	-	hypothetical protein
657	 66.13	0	770521..772386	-	621	115358627	-	Bamb_3877	-	phosphoenolpyruvate carboxykinase
658	 67.84	0	772914..773168	-	84	115358628	-	Bamb_3878	-	short-chain dehydrogenase/reductase SDR
659	 62.76	-1	773431..775017	-	528	115358629	-	Bamb_3879	-	isocitrate lyase
660	 69.49	0	775403..775933	+	176	115358630	-	Bamb_3880	-	YbaK/prolyl-tRNA synthetase associated region
661	 68.39	0	775930..776568	+	212	115358631	-	Bamb_3881	-	YheO domain-containing protein
662	 68.10	0	776617..777591	+	324	115358632	-	Bamb_3882	-	serine/threonine dehydratase
663	 70.28	0	777722..777970	+	82	115358633	-	Bamb_3883	-	hypothetical protein
664	 64.91	0	778024..778194	-	56	115358634	-	Bamb_3884	-	short-chain dehydrogenase/reductase SDR
665	 70.71	0	778236..778433	+	65	115358635	-	Bamb_3885	-	hypothetical protein
666	 66.41	0	778950..780878	+	642	115358636	-	Bamb_3886	-	TonB-dependent receptor
667	 67.92	0	780941..781579	-	212	115358637	-	Bamb_3887	-	lysine exporter protein LysE/YggA
668	 66.23	0	781694..782155	+	153	115358638	-	Bamb_3888	-	AsnC family transcriptional regulator
669	 62.03	-1	782177..782629	+	150	115358639	-	Bamb_3889	-	glyoxalase/bleomycin resistance protein/dioxygenase
670	 66.54	0	782762..783547	-	261	115358640	-	Bamb_3890	-	AraC family transcriptional regulator
671	 68.66	0	783795..786107	+	770	115358641	-	Bamb_3891	-	molybdopterin oxidoreductase
672	 64.37	0	786132..786479	-	115	115358642	-	Bamb_3892	-	RND family efflux transporter MFP subunit
673	 67.80	0	786520..787311	-	263	115358643	-	Bamb_3893	-	metal-binding integral membrane protein-like protein
674	 61.86	-1	787308..787952	-	214	115358644	-	Bamb_3894	-	hypothetical protein
675	 68.43	0	788143..789387	+	414	115358645	-	Bamb_3895	-	major facilitator transporter
676	 60.13	-1	789411..789716	-	101	115358646	-	Bamb_3896	-	hypothetical protein
677	 68.36	0	789935..790465	-	176	115358647	-	Bamb_3897	-	carbonic anhydrase
678	 67.99	0	790469..790921	-	150	115358648	-	Bamb_3898	-	electron transfer flavoprotein, alpha subunit
679	 60.23	-1	791139..791402	-	87	115358649	-	Bamb_3899	-	translation initiation factor IF-1
680	 57.35	-2	791862..792065	-	67	115358650	-	Bamb_3900	-	cold-shock DNA-binding domain-containing protein
681	 68.25	0	792405..792656	-	83	115358651	-	Bamb_3901	-	hypothetical protein
682	 64.48	0	792869..793279	-	136	115358652	-	Bamb_3902	-	PilT domain-containing protein
683	 61.60	-1	793272..793508	-	78	115358653	-	Bamb_3903	-	hypothetical protein
684	 68.80	0	793755..794927	-	390	115358654	-	Bamb_3904	-	hypothetical protein
685	 66.29	0	795337..796410	+	357	115358655	-	Bamb_3905	-	acyltransferase 3
686	 64.14	0	796423..796659	-	78	115358656	-	Bamb_3906	-	hypothetical protein
687	 71.26	+1	797135..798004	-	289	115358657	-	Bamb_3907	-	LysR family transcriptional regulator
688	 69.55	0	798145..799533	+	462	115358658	-	Bamb_3908	-	major facilitator transporter
689	 69.57	0	799559..799903	-	114	115358659	-	Bamb_3909	-	hypothetical protein
690	 72.15	+1	800044..800262	-	72	115358660	-	Bamb_3910	-	hypothetical protein
691	 61.06	-1	800382..801434	+	350	115358661	-	Bamb_3911	-	IS605 family transposase OrfB
692	 71.48	+1	801491..802654	-	387	115358662	-	Bamb_3912	-	hypothetical protein
693	 71.25	+1	802657..804051	-	464	115358663	-	Bamb_3913	-	hypothetical protein
694	 64.30	0	804256..805101	-	281	115358664	-	Bamb_3914	-	GCN5-related N-acetyltransferase
695	 66.07	0	805329..805832	-	167	115358665	-	Bamb_3915	-	integral membrane protein
696	 71.67	+1	805829..806248	-	139	115358666	-	Bamb_3916	-	hypothetical protein
697	 69.99	0	806245..806997	-	250	115358667	-	Bamb_3917	-	RNA polymerase sigma factor
698	 64.91	0	807032..807145	-	37	115358668	-	Bamb_3918	-	hypothetical protein
699	 69.33	0	807215..807514	-	99	115358669	-	Bamb_3919	-	hypothetical protein
700	 68.39	0	807727..809526	+	599	115358670	-	Bamb_3920	-	metallophosphoesterase
701	 67.46	0	809639..810271	-	210	115358671	-	Bamb_3921	-	lysine exporter protein LysE/YggA
702	 67.89	0	810401..811297	-	298	115358672	-	Bamb_3922	-	LysR family transcriptional regulator
703	 68.60	0	811603..811860	+	85	115358673	-	Bamb_3923	-	hypothetical protein
704	 66.00	0	812138..812437	+	99	115358674	-	Bamb_3924	-	hypothetical protein
705	 67.45	0	812539..814323	-	594	115358675	-	Bamb_3925	-	diguanylate cyclase
706	 65.78	0	814320..815444	-	374	115358676	-	Bamb_3926	-	extracellular solute-binding protein
707	 69.04	0	815948..817381	+	477	115358677	-	Bamb_3927	-	GntR family transcriptional regulator
708	 70.40	0	817478..817879	+	133	115358678	-	Bamb_3928	-	hypothetical protein
709	 69.02	0	818074..819858	+	594	115358679	-	Bamb_3929	-	nitrite/sulfite reductase hemoprotein beta subunit
710	 67.75	0	819855..820316	+	153	115358680	-	Bamb_3930	-	hypothetical protein
711	 70.10	0	820390..821670	-	426	115358681	-	Bamb_3931	-	virulence factor family protein
712	 70.33	0	821667..824261	-	864	115358682	-	Bamb_3932	-	hypothetical protein
713	 67.82	0	824621..825055	-	144	115358683	-	Bamb_3933	-	hypothetical protein
714	 70.60	0	825164..829357	-	1397	115358684	-	Bamb_3934	-	molybdopterin oxidoreductase
715	 66.67	0	829374..829721	-	115	115358685	-	Bamb_3935	-	nitrite reductase (NAD(P)H), small subunit
716	 67.97	0	829760..832363	-	867	115358686	-	Bamb_3936	-	nitrite reductase (NAD(P)H), large subunit
717	 68.70	0	832384..833709	-	441	115358687	-	Bamb_3937	-	major facilitator transporter
718	 68.23	0	833861..834052	-	63	115358688	-	Bamb_3938	-	hypothetical protein
719	 73.36	+1	834304..835155	+	283	115358689	-	Bamb_3939	-	uroporphyrin-III C-methyltransferase
720	 68.51	0	835321..835917	+	198	115358690	-	Bamb_3940	-	response regulator receiver/ANTAR domain-containing protein
721	 73.18	+1	835923..836966	+	347	115358691	-	Bamb_3941	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
722	 72.67	+1	837134..837733	+	199	115358692	-	Bamb_3942	-	uracil-DNA glycosylase superfamily protein
723	 69.82	0	837766..838557	+	263	115358693	-	Bamb_3943	-	hypothetical protein
724	 71.44	+1	838684..839625	+	313	115358694	-	Bamb_3944	-	AraC family transcriptional regulator
725	 69.81	0	839755..840453	+	232	115358695	-	Bamb_3945	-	fumarylacetoacetate (FAA) hydrolase
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.