IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
592	 63.70	0	682908..683681	-	257	115358562	-	Bamb_3812	-	Crp/FNR family transcriptional regulator
593	 71.76	+1	684102..684572	+	156	115358563	-	Bamb_3813	-	UspA domain-containing protein
594	 68.47	0	684624..685457	-	277	115358564	-	Bamb_3814	-	UspA domain-containing protein
595	 69.44	0	685454..685957	-	167	115358565	-	Bamb_3815	-	UspA domain-containing protein
596	 69.83	0	686027..687226	-	399	115358566	-	Bamb_3816	-	acetate kinase
597	 67.50	0	687235..688074	-	279	115358567	-	Bamb_3817	-	UspA domain-containing protein
598	 68.15	0	688265..688804	+	179	115358568	-	Bamb_3818	-	hypothetical protein
599	 66.67	0	688794..689540	+	248	115358569	-	Bamb_3819	-	acetoacetyl-CoA reductase
600	 69.19	0	689621..691441	+	606	115358570	-	Bamb_3820	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
601	 69.89	0	691438..692460	+	340	115358571	-	Bamb_3821	-	phosphate butyryltransferase
602	 66.86	0	692466..693506	+	346	115358572	-	Bamb_3822	-	alcohol dehydrogenase
603	 62.90	0	693594..693779	-	61	115358573	-	Bamb_3823	-	hypothetical protein
604	 64.41	0	694137..694757	+	206	115358574	-	Bamb_3824	-	TetR family transcriptional regulator
605	 67.52	0	694960..696018	+	352	115358575	-	Bamb_3825	-	alcohol dehydrogenase
606	 63.67	0	696101..696400	+	99	115358576	-	Bamb_3826	-	antibiotic biosynthesis monooxygenase
607	 70.18	0	696530..696985	+	151	115358577	-	Bamb_3827	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
608	 69.01	0	696987..699206	+	739	115358578	-	Bamb_3828	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
609	 68.79	0	699222..700541	+	439	115358579	-	Bamb_3829	-	cytochrome c, class I
610	 68.81	0	700703..702148	+	481	115358580	-	Bamb_3830	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
611	 63.45	0	703002..703250	-	82	115358581	-	Bamb_3831	-	hypothetical protein
612	 62.44	-1	703575..705065	+	496	115358582	-	Bamb_3832	-	integrase catalytic subunit
613	 63.03	0	705266..705760	+	164	115358583	-	Bamb_3833	-	hypothetical protein
614	 62.20	-1	705783..707393	-	536	115358584	-	Bamb_3834	-	YadA domain-containing protein
615	 64.21	0	707879..708325	+	148	115358585	-	Bamb_3835	-	hypothetical protein
616	 65.19	0	708937..710634	+	565	115358586	-	Bamb_3836	-	propeptide, peptidase M4 and M36
617	 56.72	-2	710842..711414	-	190	115358587	-	Bamb_3837	-	YbhB and YbcL
618	 57.88	-2	711557..711829	+	90	115358588	-	Bamb_3838	-	hypothetical protein
619	 55.48	-2	711836..712264	+	142	115358589	-	Bamb_3839	-	hypothetical protein
620	 59.10	-1	712311..713315	+	334	115358590	-	Bamb_3840	-	NADH:flavin oxidoreductase/NADH oxidase
621	 58.00	-2	713382..714131	+	249	115358591	-	Bamb_3841	-	short-chain dehydrogenase/reductase SDR
622	 62.15	-1	714094..714447	-	117	115358592	-	Bamb_3842	-	hypothetical protein
623	 66.82	0	714431..715093	-	220	115358593	-	Bamb_3843	-	hypothetical protein
624	 67.91	0	715814..717898	-	694	115358594	-	Bamb_3844	-	hypothetical protein
625	 64.16	0	718144..719262	+	372	115358595	-	Bamb_3845	-	LuxR family transcriptional regulator
626	 69.87	0	719301..731777	-	4158	115358596	-	Bamb_3846	-	peptidoglycan-binding LysM
627	 70.22	0	731936..732526	+	196	115358597	-	Bamb_3847	-	hypothetical protein
628	 68.42	0	732740..733996	+	418	115358598	-	Bamb_3848	-	porin
629	 63.82	0	734334..734825	+	163	115358599	-	Bamb_3849	-	OmpA/MotB domain-containing protein
630	 64.17	0	735011..735490	-	159	115358600	-	Bamb_3850	-	hypothetical protein
631	 70.70	0	735971..737233	-	420	115358601	-	Bamb_3851	-	cytochrome c, class I
632	 68.68	0	737230..737925	-	231	115358602	-	Bamb_3852	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
633	 68.06	0	737922..740798	-	958	115358603	-	Bamb_3853	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
634	 70.73	0	741191..742741	+	516	115358604	-	Bamb_3854	-	diguanylate cyclase with PAS/PAC sensor
635	 66.67	0	743005..743280	+	91	115358605	-	Bamb_3855	-	hypothetical protein
636	 67.69	0	743495..744568	+	357	115358606	-	Bamb_3856	-	succinylglutamate desuccinylase/aspartoacylase
637	 60.41	-1	744655..745725	-	356	115358607	-	Bamb_3857	-	hypothetical protein
638	 62.54	-1	745964..746884	+	306	162389969	rdgC	Bamb_3858	-	recombination associated protein
639	 69.66	0	747187..747753	+	188	115358609	-	Bamb_3859	-	GCN5-related N-acetyltransferase
640	 68.66	0	747817..748770	+	317	115358610	-	Bamb_3860	-	extracellular solute-binding protein
641	 71.81	+1	748810..749859	+	349	115358611	-	Bamb_3861	-	luciferase family protein
642	 68.87	0	749867..751225	+	452	115358612	-	Bamb_3862	-	flavin-dependent oxidoreductase
643	 69.13	0	751285..753069	+	594	115358613	-	Bamb_3863	-	polar amino acid ABC transporter, inner membrane subunit
644	 71.02	0	753104..754045	+	313	115358614	-	Bamb_3864	-	extracellular solute-binding protein
645	 71.15	+1	754140..754919	-	259	115358615	-	Bamb_3865	-	alkanesulfonate monooxygenase
646	 54.30	-2	755258..756397	+	379	115358616	-	Bamb_3866	-	acyltransferase 3
647	 72.77	+1	756822..757739	+	305	115358617	-	Bamb_3867	-	alpha/beta hydrolase-like protein
648	 68.52	0	757736..758167	+	143	115358618	-	Bamb_3868	-	MarR family transcriptional regulator
649	 67.08	0	758667..760109	+	480	115358619	-	Bamb_3869	-	BNR/Asp-box repeat-containing protein
650	 67.94	0	760172..761188	-	338	115358620	-	Bamb_3870	-	alcohol dehydrogenase
651	 69.12	0	761646..763727	+	693	115358621	-	Bamb_3871	-	TonB-dependent receptor
652	 60.81	-1	763759..764151	+	130	115358622	-	Bamb_3872	-	hypothetical protein
653	 67.35	0	764426..765895	+	489	115358623	-	Bamb_3873	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
654	 68.85	0	766000..767967	-	655	115358624	-	Bamb_3874	-	ATP-dependent metalloprotease FtsH
655	 70.15	0	768399..770063	+	554	115358625	-	Bamb_3875	-	phosphoesterase
656	 70.61	0	770099..770428	+	109	115358626	-	Bamb_3876	-	hypothetical protein
657	 66.13	0	770521..772386	-	621	115358627	-	Bamb_3877	-	phosphoenolpyruvate carboxykinase
658	 67.84	0	772914..773168	-	84	115358628	-	Bamb_3878	-	short-chain dehydrogenase/reductase SDR
659	 62.76	-1	773431..775017	-	528	115358629	-	Bamb_3879	-	isocitrate lyase
660	 69.49	0	775403..775933	+	176	115358630	-	Bamb_3880	-	YbaK/prolyl-tRNA synthetase associated region
661	 68.39	0	775930..776568	+	212	115358631	-	Bamb_3881	-	YheO domain-containing protein
662	 68.10	0	776617..777591	+	324	115358632	-	Bamb_3882	-	serine/threonine dehydratase
663	 70.28	0	777722..777970	+	82	115358633	-	Bamb_3883	-	hypothetical protein
664	 64.91	0	778024..778194	-	56	115358634	-	Bamb_3884	-	short-chain dehydrogenase/reductase SDR
665	 70.71	0	778236..778433	+	65	115358635	-	Bamb_3885	-	hypothetical protein
666	 66.41	0	778950..780878	+	642	115358636	-	Bamb_3886	-	TonB-dependent receptor
667	 67.92	0	780941..781579	-	212	115358637	-	Bamb_3887	-	lysine exporter protein LysE/YggA
668	 66.23	0	781694..782155	+	153	115358638	-	Bamb_3888	-	AsnC family transcriptional regulator
669	 62.03	-1	782177..782629	+	150	115358639	-	Bamb_3889	-	glyoxalase/bleomycin resistance protein/dioxygenase
670	 66.54	0	782762..783547	-	261	115358640	-	Bamb_3890	-	AraC family transcriptional regulator
671	 68.66	0	783795..786107	+	770	115358641	-	Bamb_3891	-	molybdopterin oxidoreductase
672	 64.37	0	786132..786479	-	115	115358642	-	Bamb_3892	-	RND family efflux transporter MFP subunit
673	 67.80	0	786520..787311	-	263	115358643	-	Bamb_3893	-	metal-binding integral membrane protein-like protein
674	 61.86	-1	787308..787952	-	214	115358644	-	Bamb_3894	-	hypothetical protein
675	 68.43	0	788143..789387	+	414	115358645	-	Bamb_3895	-	major facilitator transporter
676	 60.13	-1	789411..789716	-	101	115358646	-	Bamb_3896	-	hypothetical protein
677	 68.36	0	789935..790465	-	176	115358647	-	Bamb_3897	-	carbonic anhydrase
678	 67.99	0	790469..790921	-	150	115358648	-	Bamb_3898	-	electron transfer flavoprotein, alpha subunit
679	 60.23	-1	791139..791402	-	87	115358649	-	Bamb_3899	-	translation initiation factor IF-1
680	 57.35	-2	791862..792065	-	67	115358650	-	Bamb_3900	-	cold-shock DNA-binding domain-containing protein
681	 68.25	0	792405..792656	-	83	115358651	-	Bamb_3901	-	hypothetical protein
682	 64.48	0	792869..793279	-	136	115358652	-	Bamb_3902	-	PilT domain-containing protein
683	 61.60	-1	793272..793508	-	78	115358653	-	Bamb_3903	-	hypothetical protein
684	 68.80	0	793755..794927	-	390	115358654	-	Bamb_3904	-	hypothetical protein
685	 66.29	0	795337..796410	+	357	115358655	-	Bamb_3905	-	acyltransferase 3
686	 64.14	0	796423..796659	-	78	115358656	-	Bamb_3906	-	hypothetical protein
687	 71.26	+1	797135..798004	-	289	115358657	-	Bamb_3907	-	LysR family transcriptional regulator
688	 69.55	0	798145..799533	+	462	115358658	-	Bamb_3908	-	major facilitator transporter
689	 69.57	0	799559..799903	-	114	115358659	-	Bamb_3909	-	hypothetical protein
690	 72.15	+1	800044..800262	-	72	115358660	-	Bamb_3910	-	hypothetical protein
691	 61.06	-1	800382..801434	+	350	115358661	-	Bamb_3911	-	IS605 family transposase OrfB
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.