IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
538	 64.43	0	620324..621709	+	461	115358508	-	Bamb_3758	-	amino acid permease-associated region
539	 67.58	0	621753..622955	+	400	115358509	-	Bamb_3759	-	aromatic amino acid aminotransferase
540	 70.43	0	623085..623483	+	132	115358510	-	Bamb_3760	-	hypothetical protein
541	 62.59	-1	623601..623894	+	97	115358511	-	Bamb_3761	-	hypothetical protein
542	 60.00	-1	623911..624150	+	79	115358512	-	Bamb_3762	-	hypothetical protein
543	 69.21	0	624293..624646	+	117	115358513	-	Bamb_3763	-	hypothetical protein
544	 65.64	0	624671..625450	-	259	115358514	-	Bamb_3764	-	Crp/FNR family transcriptional regulator
545	 67.65	0	625468..625875	-	135	115358515	-	Bamb_3765	-	response regulator receiver protein
546	 74.36	+1	626064..626999	-	311	115358516	-	Bamb_3766	-	ornithine cyclodeaminase
547	 68.70	0	627215..628000	+	261	115358517	-	Bamb_3767	-	regulatory protein GntR, HTH
548	 66.67	0	628122..629243	+	373	115358518	-	Bamb_3768	-	extracellular ligand-binding receptor
549	 67.76	0	629298..630305	+	335	115358519	-	Bamb_3769	-	proline racemase
550	 69.77	0	630503..633115	+	870	115358520	-	Bamb_3770	-	peptidoglycan glycosyltransferase
551	 72.37	+1	633195..634070	+	291	115358521	-	Bamb_3771	-	type IV pilus assembly PilZ
552	 64.24	0	634355..634684	+	109	115358522	-	Bamb_3772	-	hypothetical protein
553	 62.96	0	634954..635358	+	134	115358523	-	Bamb_3773	-	hypothetical protein
554	 65.90	0	635436..636083	-	215	115358524	-	Bamb_3774	-	two component LuxR family transcriptional regulator
555	 69.73	0	636080..638203	-	707	115358525	-	Bamb_3775	-	multi-sensor signal transduction histidine kinase
556	 72.15	+1	638512..638985	+	157	115358526	-	Bamb_3776	-	UspA domain-containing protein
557	 69.23	0	639344..639850	+	168	115358527	-	Bamb_3777	-	hypothetical protein
558	 66.10	0	639996..641045	+	349	115358528	-	Bamb_3778	-	rhodanese domain-containing protein
559	 59.18	-1	641708..650794	+	3028	115358529	-	Bamb_3779	-	filamentous haemagglutinin outer membrane protein
560	 47.29	-2	651502..651759	+	85	115358530	-	Bamb_3780	-	hypothetical protein
561	 43.33	-2	651762..652031	+	89	115358531	-	Bamb_3781	-	hypothetical protein
562	 59.97	-1	652105..653865	+	586	115358532	-	Bamb_3782	-	polypeptide-transport-associated domain-containing protein
563	 51.00	-2	653901..654251	+	116	115358533	-	Bamb_3783	-	hypothetical protein
564	 43.25	-2	654362..654835	+	157	115358534	-	Bamb_3784	-	hypothetical protein
565	 49.44	-2	654981..655334	+	117	115358535	-	Bamb_3785	-	hypothetical protein
566	 71.47	+1	655755..656690	+	311	115358536	-	Bamb_3786	-	UspA domain-containing protein
567	 71.78	+1	657222..657632	-	136	115358537	-	Bamb_3787	-	hypothetical protein
568	 68.17	0	657726..658124	-	132	115358538	-	Bamb_3788	-	hypothetical protein
569	 62.40	-1	658223..658480	+	85	115358539	-	Bamb_3789	-	hypothetical protein
570	 69.33	0	658724..660523	+	599	115358540	-	Bamb_3790	-	methyl-accepting chemotaxis sensory transducer
571	 67.05	0	660566..661603	-	345	115358541	-	Bamb_3791	-	sigma-54 dependent trancsriptional regulator
572	 60.98	-1	661649..661894	+	81	115358542	-	Bamb_3792	-	hypothetical protein
573	 71.53	+1	661977..663971	+	664	115358543	-	Bamb_3793	-	multi-sensor hybrid histidine kinase
574	 67.91	0	664097..664741	+	214	115358544	-	Bamb_3794	-	hypothetical protein
575	 69.28	0	664770..665267	-	165	115358545	-	Bamb_3795	-	PRC-barrel domain-containing protein
576	 68.06	0	665335..665766	-	143	115358546	-	Bamb_3796	-	CBS domain-containing protein
577	 73.49	+1	666108..666356	-	82	115358547	-	Bamb_3797	-	hypothetical protein
578	 66.67	0	666928..667239	+	103	115358548	-	Bamb_3798	-	hypothetical protein
579	 67.46	0	667447..668325	+	292	115358549	-	Bamb_3799	-	MltA-interacting MipA family protein
580	 70.68	0	668431..670125	+	564	115358550	-	Bamb_3800	-	hypothetical protein
581	 70.14	0	670122..672422	+	766	115358551	-	Bamb_3801	-	helicase c2
582	 68.74	0	672478..673248	-	256	115358552	-	Bamb_3802	-	IclR family transcriptional regulator
583	 65.36	0	673500..674111	+	203	115358553	-	Bamb_3803	-	hypothetical protein
584	 66.97	0	674197..675534	-	445	115358554	-	Bamb_3804	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
585	 67.28	0	675709..677016	-	435	115358555	-	Bamb_3805	-	shikimate transporter
586	 67.64	0	677372..678499	+	375	115358556	-	Bamb_3806	-	4-hydroxyphenylpyruvate dioxygenase
587	 70.34	0	678680..680014	-	444	115358557	-	Bamb_3807	-	HipA domain-containing protein
588	 71.92	+1	680017..680454	-	145	115358558	-	Bamb_3808	-	XRE family transcriptional regulator
589	 64.91	0	680519..680803	-	94	115358559	-	Bamb_3809	-	hypothetical protein
590	 73.27	+1	680886..681551	-	221	115358560	-	Bamb_3810	-	cation efflux protein
591	 68.38	0	681891..682880	+	329	115358561	-	Bamb_3811	-	alcohol dehydrogenase
592	 63.70	0	682908..683681	-	257	115358562	-	Bamb_3812	-	Crp/FNR family transcriptional regulator
593	 71.76	+1	684102..684572	+	156	115358563	-	Bamb_3813	-	UspA domain-containing protein
594	 68.47	0	684624..685457	-	277	115358564	-	Bamb_3814	-	UspA domain-containing protein
595	 69.44	0	685454..685957	-	167	115358565	-	Bamb_3815	-	UspA domain-containing protein
596	 69.83	0	686027..687226	-	399	115358566	-	Bamb_3816	-	acetate kinase
597	 67.50	0	687235..688074	-	279	115358567	-	Bamb_3817	-	UspA domain-containing protein
598	 68.15	0	688265..688804	+	179	115358568	-	Bamb_3818	-	hypothetical protein
599	 66.67	0	688794..689540	+	248	115358569	-	Bamb_3819	-	acetoacetyl-CoA reductase
600	 69.19	0	689621..691441	+	606	115358570	-	Bamb_3820	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
601	 69.89	0	691438..692460	+	340	115358571	-	Bamb_3821	-	phosphate butyryltransferase
602	 66.86	0	692466..693506	+	346	115358572	-	Bamb_3822	-	alcohol dehydrogenase
603	 62.90	0	693594..693779	-	61	115358573	-	Bamb_3823	-	hypothetical protein
604	 64.41	0	694137..694757	+	206	115358574	-	Bamb_3824	-	TetR family transcriptional regulator
605	 67.52	0	694960..696018	+	352	115358575	-	Bamb_3825	-	alcohol dehydrogenase
606	 63.67	0	696101..696400	+	99	115358576	-	Bamb_3826	-	antibiotic biosynthesis monooxygenase
607	 70.18	0	696530..696985	+	151	115358577	-	Bamb_3827	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
608	 69.01	0	696987..699206	+	739	115358578	-	Bamb_3828	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
609	 68.79	0	699222..700541	+	439	115358579	-	Bamb_3829	-	cytochrome c, class I
610	 68.81	0	700703..702148	+	481	115358580	-	Bamb_3830	-	succinate-semialdehyde dehydrogenase (NAD(P)(+))
611	 63.45	0	703002..703250	-	82	115358581	-	Bamb_3831	-	hypothetical protein
612	 62.44	-1	703575..705065	+	496	115358582	-	Bamb_3832	-	integrase catalytic subunit
613	 63.03	0	705266..705760	+	164	115358583	-	Bamb_3833	-	hypothetical protein
614	 62.20	-1	705783..707393	-	536	115358584	-	Bamb_3834	-	YadA domain-containing protein
615	 64.21	0	707879..708325	+	148	115358585	-	Bamb_3835	-	hypothetical protein
616	 65.19	0	708937..710634	+	565	115358586	-	Bamb_3836	-	propeptide, peptidase M4 and M36
617	 56.72	-2	710842..711414	-	190	115358587	-	Bamb_3837	-	YbhB and YbcL
618	 57.88	-2	711557..711829	+	90	115358588	-	Bamb_3838	-	hypothetical protein
619	 55.48	-2	711836..712264	+	142	115358589	-	Bamb_3839	-	hypothetical protein
620	 59.10	-1	712311..713315	+	334	115358590	-	Bamb_3840	-	NADH:flavin oxidoreductase/NADH oxidase
621	 58.00	-2	713382..714131	+	249	115358591	-	Bamb_3841	-	short-chain dehydrogenase/reductase SDR
622	 62.15	-1	714094..714447	-	117	115358592	-	Bamb_3842	-	hypothetical protein
623	 66.82	0	714431..715093	-	220	115358593	-	Bamb_3843	-	hypothetical protein
624	 67.91	0	715814..717898	-	694	115358594	-	Bamb_3844	-	hypothetical protein
625	 64.16	0	718144..719262	+	372	115358595	-	Bamb_3845	-	LuxR family transcriptional regulator
626	 69.87	0	719301..731777	-	4158	115358596	-	Bamb_3846	-	peptidoglycan-binding LysM
627	 70.22	0	731936..732526	+	196	115358597	-	Bamb_3847	-	hypothetical protein
628	 68.42	0	732740..733996	+	418	115358598	-	Bamb_3848	-	porin
629	 63.82	0	734334..734825	+	163	115358599	-	Bamb_3849	-	OmpA/MotB domain-containing protein
630	 64.17	0	735011..735490	-	159	115358600	-	Bamb_3850	-	hypothetical protein
631	 70.70	0	735971..737233	-	420	115358601	-	Bamb_3851	-	cytochrome c, class I
632	 68.68	0	737230..737925	-	231	115358602	-	Bamb_3852	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
633	 68.06	0	737922..740798	-	958	115358603	-	Bamb_3853	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
634	 70.73	0	741191..742741	+	516	115358604	-	Bamb_3854	-	diguanylate cyclase with PAS/PAC sensor
635	 66.67	0	743005..743280	+	91	115358605	-	Bamb_3855	-	hypothetical protein
636	 67.69	0	743495..744568	+	357	115358606	-	Bamb_3856	-	succinylglutamate desuccinylase/aspartoacylase
637	 60.41	-1	744655..745725	-	356	115358607	-	Bamb_3857	-	hypothetical protein
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.