IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
470	 69.65	0	541275..542246	-	323	115358440	-	Bamb_3690	-	ABC transporter related
471	 73.00	+1	542243..543205	-	320	115358441	-	Bamb_3691	-	secretion protein HlyD family protein
472	 67.89	0	543202..543936	-	244	115358442	-	Bamb_3692	-	TetR family transcriptional regulator
473	 64.16	0	544244..544681	-	145	115358443	-	Bamb_3693	-	alkylhydroperoxidase
474	 71.18	+1	544776..546260	-	494	115358444	-	Bamb_3694	-	GntR family transcriptional regulator
475	 72.33	+1	546484..547401	+	305	115358445	-	Bamb_3695	-	LysR family transcriptional regulator
476	 68.82	0	547462..548298	+	278	115358446	-	Bamb_3696	-	short chain dehydrogenase
477	 68.47	0	548363..550081	-	572	115358447	-	Bamb_3697	-	levanase
478	 67.24	0	550127..551707	-	526	115358448	-	Bamb_3698	-	levansucrase
479	 68.89	0	551877..552911	+	344	115358449	-	Bamb_3699	-	LacI family transcription regulator
480	 68.56	0	553329..554015	+	228	115358450	-	Bamb_3700	-	ThiJ/PfpI domain-containing protein
481	 69.73	0	554158..555267	+	369	115358451	-	Bamb_3701	-	NADH:flavin oxidoreductase/NADH oxidase
482	 69.56	0	555429..556499	+	356	115358452	-	Bamb_3702	-	hypothetical protein
483	 65.66	0	556699..557097	+	132	115358453	-	Bamb_3703	-	hypothetical protein
484	 65.66	0	557153..557947	-	264	115358454	-	Bamb_3704	-	short-chain dehydrogenase/reductase SDR
485	 68.90	0	558109..558957	+	282	115358455	-	Bamb_3705	-	AraC family transcriptional regulator
486	 70.13	0	559053..559658	-	201	115358456	-	Bamb_3706	-	lysine exporter protein LysE/YggA
487	 68.18	0	559754..561202	-	482	115358457	-	Bamb_3707	-	heavy metal sensor signal transduction histidine kinase
488	 67.39	0	561199..561894	-	231	115358458	-	Bamb_3708	-	two component heavy metal response transcriptional regulator
489	 72.85	+1	561918..563420	-	500	115358459	-	Bamb_3709	-	RND efflux system outer membrane lipoprotein
490	 71.21	+1	563426..564658	-	410	115358460	-	Bamb_3710	-	RND family efflux transporter MFP subunit
491	 67.14	0	564698..567865	-	1055	115358461	-	Bamb_3711	-	acriflavin resistance protein
492	 68.59	0	568093..568872	-	259	115358462	-	Bamb_3712	-	cyclic nucleotide-binding protein
493	 68.30	0	569089..570741	+	550	115358463	-	Bamb_3713	-	acyl-CoA synthetase
494	 70.70	0	570785..572767	-	660	115358464	-	Bamb_3714	-	methyl-accepting chemotaxis sensory transducer
495	 71.30	+1	572908..573339	-	143	115358465	-	Bamb_3715	-	membrane protein-like protein
496	 67.69	0	573388..574563	-	391	115358466	-	Bamb_3716	-	voltage-gated potassium channel
497	 69.42	0	574684..575337	-	217	115358467	-	Bamb_3717	-	lysine exporter protein LysE/YggA
498	 62.94	0	575621..576103	+	160	115358468	-	Bamb_3718	-	AsnC family transcriptional regulator
499	 59.62	-1	576156..576737	+	193	115358469	-	Bamb_3719	-	hypothetical protein
500	 73.69	+1	576825..578489	-	554	115358470	-	Bamb_3720	-	IclR family transcriptional regulator
501	 65.00	0	578607..579626	+	339	115358471	-	Bamb_3721	-	beta-lactamase domain-containing protein
502	 68.33	0	579809..581188	+	459	115358472	-	Bamb_3722	-	major facilitator transporter
503	 68.79	0	581390..582190	-	266	115358473	-	Bamb_3723	-	short-chain dehydrogenase/reductase SDR
504	 69.39	0	582298..583290	+	330	115358474	-	Bamb_3724	-	AraC family transcriptional regulator
505	 71.14	+1	583301..583792	-	163	115358475	-	Bamb_3725	-	cupin 2 domain-containing protein
506	 70.28	0	583959..584429	+	156	115358476	-	Bamb_3726	-	MarR family transcriptional regulator
507	 69.86	0	584574..585824	+	416	115358477	-	Bamb_3727	-	major facilitator transporter
508	 64.18	0	585831..586877	-	348	115358478	-	Bamb_3728	-	LysR family transcriptional regulator
509	 67.55	0	586911..588269	+	452	115358479	-	Bamb_3729	-	beta alanine--pyruvate transaminase
510	 67.98	0	588318..589835	+	505	115358480	-	Bamb_3730	-	methylmalonate-semialdehyde dehydrogenase
511	 61.87	-1	589998..590372	-	124	115358481	-	Bamb_3731	-	hypothetical protein
512	 71.02	0	590679..591689	-	336	115358482	-	Bamb_3732	-	auxin efflux carrier
513	 70.56	0	591786..592736	-	316	115358483	-	Bamb_3733	-	LysR family transcriptional regulator
514	 65.87	0	592960..593337	+	125	115358484	-	Bamb_3734	-	hypothetical protein
515	 67.79	0	593356..594156	-	266	115358485	-	Bamb_3735	-	LuxR family transcriptional regulator
516	 67.95	0	594340..595746	+	468	115358486	-	Bamb_3736	-	amino acid permease-associated region
517	 71.17	+1	595811..596920	+	369	115358487	-	Bamb_3737	-	peptidase S58, DmpA
518	 69.95	0	597080..597292	-	70	115358488	-	Bamb_3738	-	hypothetical protein
519	 69.19	0	597462..599642	-	726	115358489	-	Bamb_3739	-	fusaric acid resistance protein region
520	 67.09	0	599834..600781	+	315	115358490	-	Bamb_3740	-	LysR family transcriptional regulator
521	 67.70	0	600927..601313	-	128	115358491	-	Bamb_3741	-	hypothetical protein
522	 66.84	0	601457..602599	-	380	115358492	-	Bamb_3742	-	porin
523	 60.21	-1	602719..603771	+	350	115358493	-	Bamb_3743	-	IS605 family transposase OrfB
524	 66.45	0	604096..604560	+	154	115358494	-	Bamb_3744	-	glyoxalase/bleomycin resistance protein/dioxygenase
525	 67.15	0	604634..605875	+	413	115358495	-	Bamb_3745	-	N-isopropylammelide isopropylaminohydrolase
526	 71.75	+1	606054..607391	+	445	115358496	-	Bamb_3746	-	Cl- channel, voltage-gated family protein
527	 66.89	0	607586..608938	+	450	115358497	-	Bamb_3747	-	hypothetical protein
528	 68.62	0	609003..610331	-	442	115358498	-	Bamb_3748	-	major facilitator transporter
529	 67.20	0	610565..611497	-	310	115358499	-	Bamb_3749	-	hypothetical protein
530	 69.17	0	611533..612330	-	265	115358500	-	Bamb_3750	-	short chain dehydrogenase
531	 69.48	0	612405..613115	-	236	115358501	-	Bamb_3751	-	GntR family transcriptional regulator
532	 57.10	-2	613413..613757	+	114	115358502	-	Bamb_3752	-	XRE family transcriptional regulator
533	 63.73	0	613750..615009	+	419	115358503	-	Bamb_3753	-	HipA domain-containing protein
534	 69.34	0	615025..616443	-	472	115358504	-	Bamb_3754	-	di-haem cytochrome c peroxidase
535	 66.91	0	616552..618225	-	557	115358505	-	Bamb_3755	-	phospholipase C
536	 71.10	+1	618625..619482	+	285	115358506	-	Bamb_3756	-	hypothetical protein
537	 61.81	-1	619531..620004	-	157	115358507	-	Bamb_3757	-	AsnC family transcriptional regulator
538	 64.43	0	620324..621709	+	461	115358508	-	Bamb_3758	-	amino acid permease-associated region
539	 67.58	0	621753..622955	+	400	115358509	-	Bamb_3759	-	aromatic amino acid aminotransferase
540	 70.43	0	623085..623483	+	132	115358510	-	Bamb_3760	-	hypothetical protein
541	 62.59	-1	623601..623894	+	97	115358511	-	Bamb_3761	-	hypothetical protein
542	 60.00	-1	623911..624150	+	79	115358512	-	Bamb_3762	-	hypothetical protein
543	 69.21	0	624293..624646	+	117	115358513	-	Bamb_3763	-	hypothetical protein
544	 65.64	0	624671..625450	-	259	115358514	-	Bamb_3764	-	Crp/FNR family transcriptional regulator
545	 67.65	0	625468..625875	-	135	115358515	-	Bamb_3765	-	response regulator receiver protein
546	 74.36	+1	626064..626999	-	311	115358516	-	Bamb_3766	-	ornithine cyclodeaminase
547	 68.70	0	627215..628000	+	261	115358517	-	Bamb_3767	-	regulatory protein GntR, HTH
548	 66.67	0	628122..629243	+	373	115358518	-	Bamb_3768	-	extracellular ligand-binding receptor
549	 67.76	0	629298..630305	+	335	115358519	-	Bamb_3769	-	proline racemase
550	 69.77	0	630503..633115	+	870	115358520	-	Bamb_3770	-	peptidoglycan glycosyltransferase
551	 72.37	+1	633195..634070	+	291	115358521	-	Bamb_3771	-	type IV pilus assembly PilZ
552	 64.24	0	634355..634684	+	109	115358522	-	Bamb_3772	-	hypothetical protein
553	 62.96	0	634954..635358	+	134	115358523	-	Bamb_3773	-	hypothetical protein
554	 65.90	0	635436..636083	-	215	115358524	-	Bamb_3774	-	two component LuxR family transcriptional regulator
555	 69.73	0	636080..638203	-	707	115358525	-	Bamb_3775	-	multi-sensor signal transduction histidine kinase
556	 72.15	+1	638512..638985	+	157	115358526	-	Bamb_3776	-	UspA domain-containing protein
557	 69.23	0	639344..639850	+	168	115358527	-	Bamb_3777	-	hypothetical protein
558	 66.10	0	639996..641045	+	349	115358528	-	Bamb_3778	-	rhodanese domain-containing protein
559	 59.18	-1	641708..650794	+	3028	115358529	-	Bamb_3779	-	filamentous haemagglutinin outer membrane protein
560	 47.29	-2	651502..651759	+	85	115358530	-	Bamb_3780	-	hypothetical protein
561	 43.33	-2	651762..652031	+	89	115358531	-	Bamb_3781	-	hypothetical protein
562	 59.97	-1	652105..653865	+	586	115358532	-	Bamb_3782	-	polypeptide-transport-associated domain-containing protein
563	 51.00	-2	653901..654251	+	116	115358533	-	Bamb_3783	-	hypothetical protein
564	 43.25	-2	654362..654835	+	157	115358534	-	Bamb_3784	-	hypothetical protein
565	 49.44	-2	654981..655334	+	117	115358535	-	Bamb_3785	-	hypothetical protein
566	 71.47	+1	655755..656690	+	311	115358536	-	Bamb_3786	-	UspA domain-containing protein
567	 71.78	+1	657222..657632	-	136	115358537	-	Bamb_3787	-	hypothetical protein
568	 68.17	0	657726..658124	-	132	115358538	-	Bamb_3788	-	hypothetical protein
569	 62.40	-1	658223..658480	+	85	115358539	-	Bamb_3789	-	hypothetical protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.