IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
414	 65.44	0	475930..476985	-	351	115358384	-	Bamb_3634	-	hypothetical protein
415	 68.20	0	476982..477962	-	326	115358385	-	Bamb_3635	-	hypothetical protein
416	 70.34	0	477959..479155	-	398	115358386	-	Bamb_3636	-	acyl-CoA dehydrogenase type 2
417	 59.52	-1	479152..479403	-	83	115358387	-	Bamb_3637	-	acyl carrier protein
418	 66.67	0	479572..480354	-	260	115358388	-	Bamb_3638	-	Crp/FNR family transcriptional regulator
419	 66.79	0	481269..482051	+	260	115358389	-	Bamb_3639	-	CRP/FNR family transcriptional regulator
420	 69.91	0	482084..483472	+	462	115358390	-	Bamb_3640	-	sugar transferase
421	 68.96	0	484096..484488	+	130	115358391	-	Bamb_3641	-	TraR/DksA family transcriptional regulator
422	 70.60	0	484656..486434	+	592	115358392	-	Bamb_3642	-	phosphotransferase domain-containing protein
423	 71.06	+1	486448..487563	-	371	115358393	-	Bamb_3643	-	alanine dehydrogenase
424	 68.11	0	487930..488346	+	138	115358394	-	Bamb_3644	-	hypothetical protein
425	 67.16	0	488913..489719	+	268	115358395	-	Bamb_3645	-	hypothetical protein
426	 65.32	0	489719..491497	+	592	115358396	-	Bamb_3646	-	glucose-methanol-choline oxidoreductase
427	 72.04	+1	491494..492927	+	477	115358397	-	Bamb_3647	-	cytochrome c, class I
428	 68.94	0	493145..494860	+	571	115358398	-	Bamb_3648	-	sodium/hydrogen exchanger
429	 68.78	0	495193..497085	-	630	115358399	-	Bamb_3649	-	peptidoglycan glycosyltransferase
430	 67.82	0	497427..497774	-	115	115358400	-	Bamb_3650	-	hypothetical protein
431	 71.70	+1	498412..499623	+	403	115358401	-	Bamb_3651	-	hypothetical protein
432	 66.03	0	499694..500161	-	155	115358402	-	Bamb_3652	-	MarR family transcriptional regulator
433	 72.17	+1	500287..500976	+	229	115358403	-	Bamb_3653	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit
434	 67.84	0	500973..501737	+	254	115358404	-	Bamb_3654	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit
435	 65.85	0	501760..503223	+	487	115358405	-	Bamb_3655	-	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
436	 64.78	0	503272..504120	+	282	115358406	-	Bamb_3656	-	3,4-dihydroxyphenylacetate 2,3-dioxygenase
437	 64.89	0	504150..504542	+	130	115358407	-	Bamb_3657	-	5-carboxymethyl-2-hydroxymuconate isomerase
438	 67.29	0	504562..505365	+	267	115358408	-	Bamb_3658	-	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
439	 69.90	0	505378..506181	+	267	115358409	-	Bamb_3659	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
440	 68.31	0	506326..507114	-	262	115358410	-	Bamb_3660	-	AraC family transcriptional regulator
441	 71.83	+1	507210..507461	+	83	115358411	-	Bamb_3661	-	hypothetical protein
442	 70.81	0	507508..508473	+	321	115358412	-	Bamb_3662	-	alcohol dehydrogenase
443	 65.02	0	508545..509636	-	363	115358413	-	Bamb_3663	-	porin
444	 69.66	0	509819..510886	-	355	115358414	-	Bamb_3664	-	ABC transporter related
445	 67.46	0	510879..512651	-	590	115358415	-	Bamb_3665	-	binding-protein-dependent transport systems inner membrane component
446	 62.58	-1	512760..513860	-	366	115358416	-	Bamb_3666	-	extracellular solute-binding protein
447	 68.28	0	514069..515553	-	494	115358417	-	Bamb_3667	-	GntR family transcriptional regulator
448	 67.48	0	515774..517009	+	411	115358418	-	Bamb_3668	-	Bcr/CflA subfamily drug resistance transporter
449	 67.26	0	517124..517798	+	224	115358419	-	Bamb_3669	-	two component transcriptional regulator
450	 70.69	0	517795..519186	+	463	115358420	-	Bamb_3670	-	periplasmic sensor signal transduction histidine kinase
451	 68.21	0	519248..520216	-	322	115358421	-	Bamb_3671	-	alcohol dehydrogenase
452	 69.14	0	520265..520831	-	188	115358422	-	Bamb_3672	-	TetR family transcriptional regulator
453	 67.94	0	520947..521813	-	288	115358423	-	Bamb_3673	-	MOSC domain-containing protein
454	 71.47	+1	521906..522862	-	318	115358424	-	Bamb_3674	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
455	 74.87	+1	522899..524080	-	393	115358425	-	Bamb_3675	-	cytochrome c, class I
456	 71.66	+1	524131..524931	-	266	115358426	-	Bamb_3676	-	ABC transporter related
457	 71.61	+1	524925..526016	-	363	115358427	-	Bamb_3677	-	binding-protein-dependent transport systems inner membrane component
458	 67.44	0	526021..527055	-	344	115358428	-	Bamb_3678	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components
459	 70.21	0	527092..527937	-	281	115358429	-	Bamb_3679	-	hypothetical protein
460	 70.42	0	527958..529130	-	390	115358430	-	Bamb_3680	-	alkanesulfonate monooxygenase
461	 72.46	+1	529392..530720	+	442	115358431	-	Bamb_3681	-	acyl-CoA dehydrogenase domain-containing protein
462	 71.25	+1	530782..531762	-	326	115358432	-	Bamb_3682	-	LysR family transcriptional regulator
463	 68.08	0	531780..532346	+	188	115358433	-	Bamb_3683	-	cysteine dioxygenase type I
464	 70.92	0	532406..534073	+	555	115358434	-	Bamb_3684	-	rhodanese domain-containing protein
465	 66.75	0	534188..535333	-	381	115358435	-	Bamb_3685	-	glycerophosphoryl diester phosphodiesterase
466	 69.95	0	535692..536756	+	354	115358436	-	Bamb_3686	-	squalene/phytoene synthase
467	 64.78	0	537227..538444	+	405	115358437	-	Bamb_3687	-	porin
468	 72.24	+1	538608..540113	-	501	115358438	-	Bamb_3688	-	RND efflux system outer membrane lipoprotein
469	 67.27	0	540124..541278	-	384	115358439	-	Bamb_3689	-	ABC-2 type transporter
470	 69.65	0	541275..542246	-	323	115358440	-	Bamb_3690	-	ABC transporter related
471	 73.00	+1	542243..543205	-	320	115358441	-	Bamb_3691	-	secretion protein HlyD family protein
472	 67.89	0	543202..543936	-	244	115358442	-	Bamb_3692	-	TetR family transcriptional regulator
473	 64.16	0	544244..544681	-	145	115358443	-	Bamb_3693	-	alkylhydroperoxidase
474	 71.18	+1	544776..546260	-	494	115358444	-	Bamb_3694	-	GntR family transcriptional regulator
475	 72.33	+1	546484..547401	+	305	115358445	-	Bamb_3695	-	LysR family transcriptional regulator
476	 68.82	0	547462..548298	+	278	115358446	-	Bamb_3696	-	short chain dehydrogenase
477	 68.47	0	548363..550081	-	572	115358447	-	Bamb_3697	-	levanase
478	 67.24	0	550127..551707	-	526	115358448	-	Bamb_3698	-	levansucrase
479	 68.89	0	551877..552911	+	344	115358449	-	Bamb_3699	-	LacI family transcription regulator
480	 68.56	0	553329..554015	+	228	115358450	-	Bamb_3700	-	ThiJ/PfpI domain-containing protein
481	 69.73	0	554158..555267	+	369	115358451	-	Bamb_3701	-	NADH:flavin oxidoreductase/NADH oxidase
482	 69.56	0	555429..556499	+	356	115358452	-	Bamb_3702	-	hypothetical protein
483	 65.66	0	556699..557097	+	132	115358453	-	Bamb_3703	-	hypothetical protein
484	 65.66	0	557153..557947	-	264	115358454	-	Bamb_3704	-	short-chain dehydrogenase/reductase SDR
485	 68.90	0	558109..558957	+	282	115358455	-	Bamb_3705	-	AraC family transcriptional regulator
486	 70.13	0	559053..559658	-	201	115358456	-	Bamb_3706	-	lysine exporter protein LysE/YggA
487	 68.18	0	559754..561202	-	482	115358457	-	Bamb_3707	-	heavy metal sensor signal transduction histidine kinase
488	 67.39	0	561199..561894	-	231	115358458	-	Bamb_3708	-	two component heavy metal response transcriptional regulator
489	 72.85	+1	561918..563420	-	500	115358459	-	Bamb_3709	-	RND efflux system outer membrane lipoprotein
490	 71.21	+1	563426..564658	-	410	115358460	-	Bamb_3710	-	RND family efflux transporter MFP subunit
491	 67.14	0	564698..567865	-	1055	115358461	-	Bamb_3711	-	acriflavin resistance protein
492	 68.59	0	568093..568872	-	259	115358462	-	Bamb_3712	-	cyclic nucleotide-binding protein
493	 68.30	0	569089..570741	+	550	115358463	-	Bamb_3713	-	acyl-CoA synthetase
494	 70.70	0	570785..572767	-	660	115358464	-	Bamb_3714	-	methyl-accepting chemotaxis sensory transducer
495	 71.30	+1	572908..573339	-	143	115358465	-	Bamb_3715	-	membrane protein-like protein
496	 67.69	0	573388..574563	-	391	115358466	-	Bamb_3716	-	voltage-gated potassium channel
497	 69.42	0	574684..575337	-	217	115358467	-	Bamb_3717	-	lysine exporter protein LysE/YggA
498	 62.94	0	575621..576103	+	160	115358468	-	Bamb_3718	-	AsnC family transcriptional regulator
499	 59.62	-1	576156..576737	+	193	115358469	-	Bamb_3719	-	hypothetical protein
500	 73.69	+1	576825..578489	-	554	115358470	-	Bamb_3720	-	IclR family transcriptional regulator
501	 65.00	0	578607..579626	+	339	115358471	-	Bamb_3721	-	beta-lactamase domain-containing protein
502	 68.33	0	579809..581188	+	459	115358472	-	Bamb_3722	-	major facilitator transporter
503	 68.79	0	581390..582190	-	266	115358473	-	Bamb_3723	-	short-chain dehydrogenase/reductase SDR
504	 69.39	0	582298..583290	+	330	115358474	-	Bamb_3724	-	AraC family transcriptional regulator
505	 71.14	+1	583301..583792	-	163	115358475	-	Bamb_3725	-	cupin 2 domain-containing protein
506	 70.28	0	583959..584429	+	156	115358476	-	Bamb_3726	-	MarR family transcriptional regulator
507	 69.86	0	584574..585824	+	416	115358477	-	Bamb_3727	-	major facilitator transporter
508	 64.18	0	585831..586877	-	348	115358478	-	Bamb_3728	-	LysR family transcriptional regulator
509	 67.55	0	586911..588269	+	452	115358479	-	Bamb_3729	-	beta alanine--pyruvate transaminase
510	 67.98	0	588318..589835	+	505	115358480	-	Bamb_3730	-	methylmalonate-semialdehyde dehydrogenase
511	 61.87	-1	589998..590372	-	124	115358481	-	Bamb_3731	-	hypothetical protein
512	 71.02	0	590679..591689	-	336	115358482	-	Bamb_3732	-	auxin efflux carrier
513	 70.56	0	591786..592736	-	316	115358483	-	Bamb_3733	-	LysR family transcriptional regulator
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.