IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.96   STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
335	 72.92	+1	377924..378307	+	127	115358305	-	Bamb_3555	-	protein of unknown function DUF395, YeeE/YedE
336	 67.85	0	378309..378731	+	140	115358306	-	Bamb_3556	-	protein of unknown function DUF395, YeeE/YedE
337	 71.23	+1	378856..379206	-	116	115358307	-	Bamb_3557	-	hypothetical protein
338	 69.08	0	379401..380894	+	497	115358308	-	Bamb_3558	-	GntR family transcriptional regulator
339	 69.20	0	381039..381314	-	91	115358309	-	Bamb_3559	-	hypothetical protein
340	 71.94	+1	381411..382757	-	448	115358310	-	Bamb_3560	-	di-haem cytochrome c peroxidase
341	 69.06	0	383231..384694	-	487	115358311	-	Bamb_3561	-	metallophosphoesterase
342	 70.08	0	384875..385723	+	282	115358312	-	Bamb_3562	-	methyltransferase type 11
343	 68.91	0	385766..386077	-	103	115358313	-	Bamb_3563	-	hypothetical protein
344	 66.08	0	386444..387640	-	398	115358314	-	Bamb_3564	-	porin
345	 68.65	0	387759..390179	-	806	115358315	-	Bamb_3565	-	Alpha-glucosidase
346	 66.67	0	390207..391538	-	443	115358316	-	Bamb_3566	-	major facilitator transporter
347	 57.48	-2	391555..391848	-	97	115358317	-	Bamb_3567	-	hypothetical protein
348	 68.98	0	391925..392875	+	316	115358318	-	Bamb_3568	-	RpiR family transcriptional regulator
349	 72.12	+1	392872..393879	+	335	115358319	-	Bamb_3569	-	peptidase T2, asparaginase 2
350	 69.66	0	393907..395808	+	633	115358320	-	Bamb_3570	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
351	 63.98	0	395939..397501	+	520	115358321	-	Bamb_3571	-	extracellular solute-binding protein
352	 67.43	0	397569..398489	+	306	115358322	-	Bamb_3572	-	binding-protein-dependent transport systems inner membrane component
353	 67.56	0	398497..399390	+	297	115358323	-	Bamb_3573	-	binding-protein-dependent transport systems inner membrane component
354	 71.65	+1	399390..400472	+	360	115358324	-	Bamb_3574	-	peptidase S58, DmpA
355	 68.24	0	400469..401296	+	275	115358325	-	Bamb_3575	-	peptidase M55, D-aminopeptidase
356	 68.83	0	401369..402337	+	322	115358326	-	Bamb_3576	-	AraC family transcriptional regulator
357	 64.63	0	402492..402785	-	97	115358327	-	Bamb_3577	-	hypothetical protein
358	 66.84	0	402782..403375	-	197	115358328	-	Bamb_3578	-	protocatechuate 3,4-dioxygenase, alpha subunit
359	 66.81	0	403379..404086	-	235	115358329	-	Bamb_3579	-	protocatechuate 3,4-dioxygenase, beta subunit
360	 73.05	+1	404388..404951	-	187	115358330	-	Bamb_3580	-	hypothetical protein
361	 68.02	0	405072..405809	+	245	115358331	-	Bamb_3581	-	XRE family transcriptional regulator
362	 72.04	+1	405887..406873	+	328	115358332	-	Bamb_3582	-	LysR family transcriptional regulator
363	 64.17	0	407007..407366	+	119	115358333	-	Bamb_3583	-	hypothetical protein
364	 63.64	0	407439..407735	+	98	115358334	-	Bamb_3584	-	hypothetical protein
365	 63.78	0	408253..409707	+	484	115358335	-	Bamb_3585	-	TolC family type I secretion outer membrane protein
366	 63.61	0	409707..411503	+	598	115358336	-	Bamb_3586	-	type I secretion system ATPase
367	 63.65	0	411653..412879	+	408	115358337	-	Bamb_3587	-	HlyD family type I secretion membrane fusion protein
368	 47.70	-2	414836..415399	+	187	115358338	-	Bamb_3588	-	hypothetical protein
369	 53.18	-2	416436..419267	+	943	115358339	-	Bamb_3589	-	hypothetical protein
370	 72.48	+1	419429..420700	-	423	115358340	-	Bamb_3590	-	amino acid permease-associated region
371	 71.26	+1	420829..425355	-	1508	115358341	-	Bamb_3591	-	DEAD/DEAH box helicase domain-containing protein
372	 70.86	0	425615..426139	-	174	115358342	-	Bamb_3592	-	hypothetical protein
373	 64.40	0	426537..428258	+	573	115358343	-	Bamb_3593	-	gamma-glutamyltransferase
374	 63.30	0	428522..429472	+	316	115358344	-	Bamb_3594	-	hypothetical protein
375	 65.62	0	429528..429815	-	95	115358345	-	Bamb_3595	-	histone family protein nucleoid-structuring protein H-NS
376	 68.88	0	430012..430599	-	195	115358346	-	Bamb_3596	-	hypothetical protein
377	 65.37	0	430904..431599	+	231	115358347	-	Bamb_3597	-	hypothetical protein
378	 63.52	0	431583..432377	+	264	115358348	-	Bamb_3598	-	phospholipid/glycerol acyltransferase
379	 53.92	-2	432352..432657	+	101	115358349	-	Bamb_3599	-	putative acyl-carrier-protein
380	 60.64	-1	432654..432902	+	82	115358350	-	Bamb_3600	-	acyl carrier protein
381	 63.71	0	432899..433540	+	213	115358351	-	Bamb_3601	-	hypothetical protein
382	 70.57	0	433537..435228	+	563	115358352	-	Bamb_3602	-	AMP-dependent synthetase and ligase
383	 66.61	0	435225..436931	+	568	115358353	-	Bamb_3603	-	glycosyl transferase family protein
384	 69.50	0	436918..438540	+	540	115358354	-	Bamb_3604	-	histidine ammonia-lyase
385	 61.77	-1	438537..438965	+	142	115358355	-	Bamb_3605	-	thioesterase superfamily protein
386	 69.62	0	438956..439633	+	225	115358356	-	Bamb_3606	-	putative signal peptide protein
387	 69.73	0	439630..442041	+	803	115358357	-	Bamb_3607	-	putative lipoprotein transmembrane
388	 70.20	0	442038..443225	+	395	115358358	-	Bamb_3608	-	3-oxoacyl-(acyl carrier protein) synthase I
389	 66.67	0	443227..443730	+	167	115358359	-	Bamb_3609	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
390	 69.42	0	443727..444452	+	241	115358360	-	Bamb_3610	-	short chain dehydrogenase
391	 65.69	0	444452..445681	+	409	115358361	-	Bamb_3611	-	3-oxoacyl-(acyl carrier protein) synthase II
392	 69.25	0	445678..446916	+	412	115358362	-	Bamb_3612	-	beta-ketoacyl synthase
393	 64.08	0	446949..447374	+	141	115358363	-	Bamb_3613	-	putative signal peptide protein
394	 64.14	0	447386..447820	+	144	115358364	-	Bamb_3614	-	excinuclease ATPase subunit
395	 63.61	0	447865..448584	-	239	115358365	-	Bamb_3615	-	methyltransferase type 11
396	 64.18	0	448695..449942	+	415	115358366	-	Bamb_3616	-	tryptophan halogenase
397	 68.26	0	450008..452209	-	733	115358367	-	Bamb_3617	-	Beta-glucosidase
398	 65.71	0	452666..453925	-	419	115358368	-	Bamb_3618	-	polysaccharide biosynthesis protein
399	 70.44	0	454505..456361	+	618	115358369	-	Bamb_3619	-	hypothetical protein
400	 70.91	0	456498..456968	-	156	115358370	-	Bamb_3620	-	hypothetical protein
401	 70.74	0	457044..458270	+	408	115358371	-	Bamb_3621	-	polysaccharide export protein
402	 68.07	0	458329..460611	+	760	115358372	-	Bamb_3622	-	hypothetical protein
403	 65.11	0	460608..462020	+	470	115358373	-	Bamb_3623	-	hypothetical protein
404	 59.83	-1	462046..463215	+	389	115358374	-	Bamb_3624	-	acyltransferase 3
405	 62.77	-1	463246..464322	-	358	115358375	-	Bamb_3625	-	glycosyl transferase, group 1
406	 65.82	0	464350..465531	-	393	115358376	-	Bamb_3626	-	glycosyl transferase, group 1
407	 66.75	0	465882..467021	-	379	115358377	-	Bamb_3627	-	glycosyl transferase family protein
408	 68.16	0	467259..468533	+	424	115358378	-	Bamb_3628	-	hypothetical protein
409	 68.12	0	468561..470138	-	525	115358379	-	Bamb_3629	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
410	 67.86	0	470135..470719	-	194	115358380	-	Bamb_3630	-	acyltransferase-like protein
411	 64.84	0	470946..471383	-	145	115358381	-	Bamb_3631	-	hypothetical protein
412	 67.24	0	472006..473397	+	463	115358382	-	Bamb_3632	-	sigma-54 dependent trancsriptional regulator
413	 71.98	+1	473450..475933	-	827	115358383	-	Bamb_3633	-	Beta-mannosidase
414	 65.44	0	475930..476985	-	351	115358384	-	Bamb_3634	-	hypothetical protein
415	 68.20	0	476982..477962	-	326	115358385	-	Bamb_3635	-	hypothetical protein
416	 70.34	0	477959..479155	-	398	115358386	-	Bamb_3636	-	acyl-CoA dehydrogenase type 2
417	 59.52	-1	479152..479403	-	83	115358387	-	Bamb_3637	-	acyl carrier protein
418	 66.67	0	479572..480354	-	260	115358388	-	Bamb_3638	-	Crp/FNR family transcriptional regulator
419	 66.79	0	481269..482051	+	260	115358389	-	Bamb_3639	-	CRP/FNR family transcriptional regulator
420	 69.91	0	482084..483472	+	462	115358390	-	Bamb_3640	-	sugar transferase
421	 68.96	0	484096..484488	+	130	115358391	-	Bamb_3641	-	TraR/DksA family transcriptional regulator
422	 70.60	0	484656..486434	+	592	115358392	-	Bamb_3642	-	phosphotransferase domain-containing protein
423	 71.06	+1	486448..487563	-	371	115358393	-	Bamb_3643	-	alanine dehydrogenase
424	 68.11	0	487930..488346	+	138	115358394	-	Bamb_3644	-	hypothetical protein
425	 67.16	0	488913..489719	+	268	115358395	-	Bamb_3645	-	hypothetical protein
426	 65.32	0	489719..491497	+	592	115358396	-	Bamb_3646	-	glucose-methanol-choline oxidoreductase
427	 72.04	+1	491494..492927	+	477	115358397	-	Bamb_3647	-	cytochrome c, class I
428	 68.94	0	493145..494860	+	571	115358398	-	Bamb_3648	-	sodium/hydrogen exchanger
429	 68.78	0	495193..497085	-	630	115358399	-	Bamb_3649	-	peptidoglycan glycosyltransferase
430	 67.82	0	497427..497774	-	115	115358400	-	Bamb_3650	-	hypothetical protein
431	 71.70	+1	498412..499623	+	403	115358401	-	Bamb_3651	-	hypothetical protein
432	 66.03	0	499694..500161	-	155	115358402	-	Bamb_3652	-	MarR family transcriptional regulator
433	 72.17	+1	500287..500976	+	229	115358403	-	Bamb_3653	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit
434	 67.84	0	500973..501737	+	254	115358404	-	Bamb_3654	-	4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit
66.96	MEAN

4.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.