IslandPathversion 1.0

IslandPath Analysis: Burkholderia ambifaria AMMD



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 66.96 STD DEV: 4.07
Burkholderia cepacia AMMD chromosome 2, complete sequence - 1..2646969
2346 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
284	 72.22	+1	313587..314288	+	233	115358254	-	Bamb_3504	-	aspartate racemase
285	 69.35	0	314373..315266	-	297	115358255	-	Bamb_3505	-	LysR family transcriptional regulator
286	 70.01	0	315444..316610	+	388	115358256	-	Bamb_3506	-	extracellular ligand-binding receptor
287	 68.70	0	316627..317166	+	179	115358257	-	Bamb_3507	-	hypothetical protein
288	 71.28	+1	317159..318415	+	418	115358258	-	Bamb_3508	-	allantoate amidohydrolase
289	 72.40	+1	318426..319262	-	278	115358259	-	Bamb_3509	-	cytochrome c, class I
290	 70.43	0	319615..320916	-	433	115358260	-	Bamb_3510	-	hypothetical protein
291	 67.32	0	320913..322736	-	607	115358261	-	Bamb_3511	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
292	 68.10	0	322859..323347	-	162	115358262	-	Bamb_3512	-	hypothetical protein
293	 63.60	0	323325..324596	-	423	115358263	-	Bamb_3513	-	N-glycosyltransferase PgaC
294	 64.71	0	324593..326686	-	697	115358264	-	Bamb_3514	-	polysaccharide deacetylase
295	 68.80	0	326702..329566	-	954	115358265	-	Bamb_3515	-	hypothetical protein
296	 70.30	0	329671..330441	-	256	115358266	-	Bamb_3516	-	hypothetical protein
297	 65.12	0	330527..330979	-	150	115358267	-	Bamb_3517	-	hypothetical protein
298	 67.47	0	331649..332641	-	330	115358268	-	Bamb_3518	-	LysR family transcriptional regulator
299	 65.69	0	333287..334717	+	476	115358269	-	Bamb_3519	-	hypothetical protein
300	 65.50	0	334782..335723	+	313	115358270	-	Bamb_3520	-	hypothetical protein
301	 69.81	0	335732..336748	+	338	115358271	-	Bamb_3521	-	transglutaminase domain-containing protein
302	 68.96	0	336842..340291	+	1149	115358272	-	Bamb_3522	-	transglutaminase domain-containing protein
303	 71.61	+1	340504..343110	+	868	115358273	-	Bamb_3523	-	hypothetical protein
304	 71.10	+1	343104..344162	+	352	115358274	-	Bamb_3524	-	transglutaminase domain-containing protein
305	 67.03	0	344346..344618	+	90	115358275	-	Bamb_3525	-	hypothetical protein
306	 67.85	0	344686..345618	-	310	115358276	-	Bamb_3526	-	proline iminopeptidase
307	 66.99	0	345867..347093	+	408	115358277	-	Bamb_3527	-	acyltransferase 3
308	 65.60	0	347122..347967	-	281	115358278	-	Bamb_3528	-	hypothetical protein
309	 60.25	-1	347975..348379	-	134	115358279	-	Bamb_3529	-	hypothetical protein
310	 54.99	-2	349061..349951	-	296	115358280	-	Bamb_3530	-	LysR family transcriptional regulator
311	 59.76	-1	350096..350848	+	250	115358281	-	Bamb_3531	-	short chain dehydrogenase
312	 53.70	-2	351110..351826	+	238	115358282	-	Bamb_3532	-	glutathione S-transferase domain-containing protein
313	 64.88	0	352074..353138	-	354	115358283	-	Bamb_3533	-	aminotransferase, class V
314	 69.88	0	353138..354319	-	393	115358284	-	Bamb_3534	-	thiamine pyrophosphate binding domain-containing protein
315	 66.07	0	354316..356001	-	561	115358285	-	Bamb_3535	-	phosphoenolpyruvate phosphomutase
316	 65.76	0	355998..356765	-	255	115358286	-	Bamb_3536	-	sugar nucleotidyltransferase-like protein
317	 72.75	+1	356802..357803	-	333	115358287	-	Bamb_3537	-	hypothetical protein
318	 66.17	0	357800..358609	-	269	115358288	-	Bamb_3538	-	2OG-Fe(II) oxygenase
319	 67.84	0	358606..359286	-	226	115358289	-	Bamb_3539	-	CDP-alcohol phosphatidyltransferase
320	 67.66	0	359926..361440	+	504	115358290	-	Bamb_3540	-	Acetyl-CoA hydrolase
321	 69.48	0	361641..362066	+	141	115358291	-	Bamb_3541	-	MerR family transcriptional regulator
322	 69.40	0	362145..363023	-	292	115358292	-	Bamb_3542	-	helix-hairpin-helix DNA-binding, class 1
323	 72.40	+1	363212..364762	-	516	115358293	-	Bamb_3543	-	RNA polymerase, sigma 38 subunit, RpoS
324	 70.11	0	365070..365534	+	154	115358294	-	Bamb_3544	-	hypothetical protein
325	 73.94	+1	365568..366419	+	283	115358295	-	Bamb_3545	-	SH3 type 3 domain-containing protein
326	 66.99	0	366536..368395	-	619	115358296	-	Bamb_3546	-	dihydroxy-acid dehydratase
327	 69.99	0	368810..369832	-	340	115358297	-	Bamb_3547	-	malate/L-lactate dehydrogenase
328	 72.07	+1	369825..371417	-	530	115358298	-	Bamb_3548	-	aldehyde dehydrogenase
329	 67.16	0	371488..373113	-	541	115358299	-	Bamb_3549	-	amino acid permease-associated region
330	 69.02	0	373741..374676	+	311	115358300	-	Bamb_3550	-	proline racemase
331	 71.63	+1	374673..375800	+	375	115358301	-	Bamb_3551	-	FAD dependent oxidoreductase
332	 71.79	+1	375901..376134	+	77	115358302	-	Bamb_3552	-	ferredoxin
333	 74.31	+1	376131..377399	+	422	115358303	-	Bamb_3553	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
334	 66.38	0	377533..377883	+	116	115358304	-	Bamb_3554	-	ArsR family transcriptional regulator
335	 72.92	+1	377924..378307	+	127	115358305	-	Bamb_3555	-	protein of unknown function DUF395, YeeE/YedE
336	 67.85	0	378309..378731	+	140	115358306	-	Bamb_3556	-	protein of unknown function DUF395, YeeE/YedE
337	 71.23	+1	378856..379206	-	116	115358307	-	Bamb_3557	-	hypothetical protein
338	 69.08	0	379401..380894	+	497	115358308	-	Bamb_3558	-	GntR family transcriptional regulator
339	 69.20	0	381039..381314	-	91	115358309	-	Bamb_3559	-	hypothetical protein
340	 71.94	+1	381411..382757	-	448	115358310	-	Bamb_3560	-	di-haem cytochrome c peroxidase
341	 69.06	0	383231..384694	-	487	115358311	-	Bamb_3561	-	metallophosphoesterase
342	 70.08	0	384875..385723	+	282	115358312	-	Bamb_3562	-	methyltransferase type 11
343	 68.91	0	385766..386077	-	103	115358313	-	Bamb_3563	-	hypothetical protein
344	 66.08	0	386444..387640	-	398	115358314	-	Bamb_3564	-	porin
345	 68.65	0	387759..390179	-	806	115358315	-	Bamb_3565	-	Alpha-glucosidase
346	 66.67	0	390207..391538	-	443	115358316	-	Bamb_3566	-	major facilitator transporter
347	 57.48	-2	391555..391848	-	97	115358317	-	Bamb_3567	-	hypothetical protein
348	 68.98	0	391925..392875	+	316	115358318	-	Bamb_3568	-	RpiR family transcriptional regulator
349	 72.12	+1	392872..393879	+	335	115358319	-	Bamb_3569	-	peptidase T2, asparaginase 2
350	 69.66	0	393907..395808	+	633	115358320	-	Bamb_3570	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
351	 63.98	0	395939..397501	+	520	115358321	-	Bamb_3571	-	extracellular solute-binding protein
352	 67.43	0	397569..398489	+	306	115358322	-	Bamb_3572	-	binding-protein-dependent transport systems inner membrane component
353	 67.56	0	398497..399390	+	297	115358323	-	Bamb_3573	-	binding-protein-dependent transport systems inner membrane component
354	 71.65	+1	399390..400472	+	360	115358324	-	Bamb_3574	-	peptidase S58, DmpA
355	 68.24	0	400469..401296	+	275	115358325	-	Bamb_3575	-	peptidase M55, D-aminopeptidase
356	 68.83	0	401369..402337	+	322	115358326	-	Bamb_3576	-	AraC family transcriptional regulator
357	 64.63	0	402492..402785	-	97	115358327	-	Bamb_3577	-	hypothetical protein
358	 66.84	0	402782..403375	-	197	115358328	-	Bamb_3578	-	protocatechuate 3,4-dioxygenase, alpha subunit
359	 66.81	0	403379..404086	-	235	115358329	-	Bamb_3579	-	protocatechuate 3,4-dioxygenase, beta subunit
360	 73.05	+1	404388..404951	-	187	115358330	-	Bamb_3580	-	hypothetical protein
361	 68.02	0	405072..405809	+	245	115358331	-	Bamb_3581	-	XRE family transcriptional regulator
362	 72.04	+1	405887..406873	+	328	115358332	-	Bamb_3582	-	LysR family transcriptional regulator
363	 64.17	0	407007..407366	+	119	115358333	-	Bamb_3583	-	hypothetical protein
364	 63.64	0	407439..407735	+	98	115358334	-	Bamb_3584	-	hypothetical protein
365	 63.78	0	408253..409707	+	484	115358335	-	Bamb_3585	-	TolC family type I secretion outer membrane protein
366	 63.61	0	409707..411503	+	598	115358336	-	Bamb_3586	-	type I secretion system ATPase
367	 63.65	0	411653..412879	+	408	115358337	-	Bamb_3587	-	HlyD family type I secretion membrane fusion protein
368	 47.70	-2	414836..415399	+	187	115358338	-	Bamb_3588	-	hypothetical protein
369	 53.18	-2	416436..419267	+	943	115358339	-	Bamb_3589	-	hypothetical protein
370	 72.48	+1	419429..420700	-	423	115358340	-	Bamb_3590	-	amino acid permease-associated region
371	 71.26	+1	420829..425355	-	1508	115358341	-	Bamb_3591	-	DEAD/DEAH box helicase domain-containing protein
372	 70.86	0	425615..426139	-	174	115358342	-	Bamb_3592	-	hypothetical protein
373	 64.40	0	426537..428258	+	573	115358343	-	Bamb_3593	-	gamma-glutamyltransferase
374	 63.30	0	428522..429472	+	316	115358344	-	Bamb_3594	-	hypothetical protein
375	 65.62	0	429528..429815	-	95	115358345	-	Bamb_3595	-	histone family protein nucleoid-structuring protein H-NS
376	 68.88	0	430012..430599	-	195	115358346	-	Bamb_3596	-	hypothetical protein
377	 65.37	0	430904..431599	+	231	115358347	-	Bamb_3597	-	hypothetical protein
378	 63.52	0	431583..432377	+	264	115358348	-	Bamb_3598	-	phospholipid/glycerol acyltransferase
379	 53.92	-2	432352..432657	+	101	115358349	-	Bamb_3599	-	putative acyl-carrier-protein
380	 60.64	-1	432654..432902	+	82	115358350	-	Bamb_3600	-	acyl carrier protein
381	 63.71	0	432899..433540	+	213	115358351	-	Bamb_3601	-	hypothetical protein
382	 70.57	0	433537..435228	+	563	115358352	-	Bamb_3602	-	AMP-dependent synthetase and ligase
383	 66.61	0	435225..436931	+	568	115358353	-	Bamb_3603	-	glycosyl transferase family protein
66.96	MEAN

4.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.